TCONS_00010920 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010920
Unique NameTCONS_00010920
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2254

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010920 ID=TCONS_00010920|Name=TCONS_00010920|organism=Clytia hemisphaerica|type=transcript|length=2254bp
AATTTTTATAGTGCGTGTAATAAACAGACGTATGCAGTTATCATATGAAT
CACCAAAATAACTTTATGAAACTTCATCTATTTTCTGTGGCGTTGTGGTT
TAGTAATAAAATGTGCCGAGAAGCTTATTAACAGCGCAAGAGAAAAATAC
TATATTGATTGTTATTGAAAGTGATAACCTTTTTAATGTTCATTGTGGCT
ACAATTTATTGGAGATGTTCGATTCACCGCTTGATTTTTTTGTAAAGTGG
ATTAAATAGATAAAATCAATATTCTACGTGGATAACCTAATGATCTTGGT
CTTAAAGACGATTCTTTACACGGGGTCTACGGCTAACCGTATAGGCTGTC
TATGAACTTAACGTGATATTGAACGGAGTAGGAATTCGAACCGGACGCTC
TGTTTTGTGGTCGTGACACCACAGACCAATCAACAATCGCCTACAATGAA
TTCTAAGCGGCATCtcttattttttctgttggtaCTTGTCTCCTATGGAC
TTTTGTACTTGTTCTCCGCTTACACGAATGGTGATGTAACTTTCGATCCA
GTAAGGTTGAAATTCTTTATTAAACCGAAATTGTCTGGCATGCGATTGAG
CAATGCAAGTGAAGTCGAAGACCCGAGTAAtaattcttcaattttaaaaa
tcaccCGTGAACCAGCGTTGACAGTTACAGCAACATCAAAACCTTCAACA
CAAAGACTAAAATCGTcaacaatgttttcaaaaacaacagTCAACGCTCA
TTCTACAACACCCGCCACGCCAACAAAAAACAAGTCCACGCCCGAAAATC
CAACATCTTTGTCAACGCCCAAACCAACCACCACTGGACCGCCCGATCTT
TGTCCCCATCCAACACTCCCACACAAAATTGAAATCCAAGCCAAAGACCA
AATCAGTTGCAAACCTTACATGCTGACCCCAAAATCTTGTAAATACGTAG
CAAAGGAATATGTTTATAAATACAAAGACCACAAATGCGGGTCACAGAAT
GACGGGATAGAAAACGTCAATATTTGCCAATTCGTTGAAAAAGATGTTAA
ATTTAAATGTAACTTTGAAGCATGCGGTGGTAACAAGGATCAACAAATTT
ACTTACACGTGTTTAAAGACGATACGGGGTGGTATGAAGCTGTCAAACCT
GGATTGAACAACTCCAAATCACTCGAAAATGCTTTACTAGAACACGTCAA
CAAATTGAGAATAGCAAAAGATTTTGTATTCTTAAGTTGTGGTGAAAATA
AGACTAGAACACAACTGGTACACTTTGACTCAGTGCATTTTAAAGAAACC
AAGCCACAAaaagaacgtaaaaacacgaACAGATCTGATCGTACCGCTAA
AATTAACATAAATGTTGTTTGGTTAGATTCACTATCGCGTCGGCATTTCT
ATCGTTCATTGCCGAAGACGATACAAAGAATCACCGACATAAACAGCGAC
CAATCAACCAAAACTGAAATATTAGATTTTGAAATGATGCAAGCTGTCCA
TGGGCACACTCACGAGAATTTAATCGCATTCTTTGAAGGACATGTTTTAC
CTAAAAAACAGAGGAGTAGACAACCACACCTTGACAATCTTTTGAACTTC
ACGAGACAATCTGGATATCGGAATGTGTACCAGGAAGACATGTGTTATAA
GGGAGGATGGGGATTCAACGGGATAGCAAAAGCTGGTGGAAAATGGACAA
ATATTGTGAAAGGGATTAGTAAATTTGCCATAGACGATACAGGTTTGACG
TTCGCTTCATGCAAAATGATCGAGTCTTATTCTGATAGTCTGAACATTTT
CAACGATGATAAAGACTTATAACGGGCTCAACTACAATACGTACTACGTA
CGTCATATCGCTAAAAAGCTGAAAACTACGGCATCGAATTTATTCTTGTT
TTCAATGCTGTGTATCCCGCACGATTACGGCGGTTACCGTGTACAAGGAG
CTGATCACGGTCTCGCGGACTTTATCACGGAAATGAGCCAACTTGAAAAC
ACAATTACGTTCTTATTCGCGGATCACGGTAACACGTATACGGGATACGC
TAGTACGTTAGACGGGCGTCATGAACAATATAATCCTCATTTCTTTACGA
TTGTACCGGGAAACGTTGtcgggaaaatcgggaaatcatcAATGGATGCT
CTACGTCGAAATCATCTTCGAATGGTGACTTTGATAGACCTTCACCACAC
TGTTAAACATCTAGCTAATACCAATTACCAAAACAAAGGTCTTTTAACAG
AAGT
Run BLAST on NCBI

protein sequence of TCONS_00010920-protein

>TCONS_00010920-protein ID=TCONS_00010920-protein|Name=TCONS_00010920-protein|organism=Clytia hemisphaerica|type=polypeptide|length=458bp
MNSKRHLLFFLLVLVSYGLLYLFSAYTNGDVTFDPVRLKFFIKPKLSGMR
LSNASEVEDPSNNSSILKITREPALTVTATSKPSTQRLKSSTMFSKTTVN
AHSTTPATPTKNKSTPENPTSLSTPKPTTTGPPDLCPHPTLPHKIEIQAK
DQISCKPYMLTPKSCKYVAKEYVYKYKDHKCGSQNDGIENVNICQFVEKD
VKFKCNFEACGGNKDQQIYLHVFKDDTGWYEAVKPGLNNSKSLENALLEH
VNKLRIAKDFVFLSCGENKTRTQLVHFDSVHFKETKPQKERKNTNRSDRT
AKININVVWLDSLSRRHFYRSLPKTIQRITDINSDQSTKTEILDFEMMQA
VHGHTHENLIAFFEGHVLPKKQRSRQPHLDNLLNFTRQSGYRNVYQEDMC
YKGGWGFNGIAKAGGKWTNIVKGISKFAIDDTGLTFASCKMIESYSDSLN
IFNDDKDL
Run BLAST on NCBI

transcript from alignment at sc0000118:312872..315394-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010920 ID=TCONS_00010920|Name=TCONS_00010920|organism=Clytia hemisphaerica|type=transcript|length=2523bp|location=Sequence derived from alignment at sc0000118:312872..315394- (Clytia hemisphaerica)
AATTTTTATAGTGCGTGTAATAAACAGACGTATGCAGTTATCATATGAAT
CACCAAAATAACTTTATGAAACTTCATCTATTTTCTGTGGCGTTGTGGTT
TAGTAATAAAATGTGCCGAGAAGCTTATTAACAGCGCAAGAGAAAAATAC
TATATTGATTGTTATTGAAAGTGATAACCTTTTTAATGTTCATTGTGGCT
ACAATTTATTGGAGATGTTCGATTCACCGCTTGATTTTTTTGTAAAGTGG
ATTAAATAGATAAAATCAATATTCTACGTGGATAACCTAATGATCTTGGT
CTTAAAGACGATTCTTTACACGGGGTCTACGGCTAACCGTATAGGCTGTC
TATGAACTTAACGTGATATTGAACGGAGTAGGAATTCGAACCGGACGCTC
TGTTTTGTGGTCGTGACACCACAGACCAATCAACAATCGCCTACAATGAA
TTCTAAGCGGCATCTCTTATTTTTTCTGTTGGTACTTGTCTCCTATGGAC
TTTTGTACTTGTTCTCCGCTTACACGAATGGTGATGTAACTTTCGATCCA
GTAAGGTTGAAATTCTTTATTAAACCGAAATTGTCTGGCATGCGATTGAG
CAATGCAAGTGAAGTCGAAGACCCGAGTAATAATTCTTCAATTTTAAAAA
TCACCCGTGAACCAGCGTTGACAGTTACAGCAACATCAAAACCTTCAACA
CAAAGACTAAAATCGTCAACAATGTTTTCAAAAACAACAGTCAACGCTCA
TTCTACAACACCCGCCACGCCAACAAAAAACAAGTCCACGCCCGAAAATC
CAACATCTTTGTCAACGCCCAAACCAACCACCACTGGACCGCCCGATCTT
TGTCCCCATCCAACACTCCCACACAAAATTGAAATCCAAGCCAAAGACCA
AATCAGTTGCAAACCTTACATGCTGACCCCAAAATCTTGTAAATACGTAG
CAAAGGAATATGTTTATAAATACAAAGACCACAAATGCGGGTCACAGAAT
GACGGGATAGAAAACGTCAATATTTGCCAATTCGTTGAAAAAGATGTTAA
ATTTAAATGTAACTTTGAAGCATGCGGTGGTAACAAGGATCAACAAATTT
ACTTACACGTGTTTAAAGACGATACGGGGTGGTATGAAGCTGTCAAACCT
GGATTGAACAACTCCAAATCACTCGAAAATGCTTTACTAGAACACGTCAA
CAAATTGAGAATAGCAAAAGATTTTGTATTCTTAAGTTGTGGTGAAAATA
AGACTAGAACACAACTGGTACACTTTGACTCAGTGCATTTTAAAGAAACC
AAGCCACAAAAAGAACGTAAAAACACGAACAGATCTGATCGTACCGCTAA
AATTAACATAAATGTTGTTTGGTTAGATTCACTATCGCGTCGGCATTTCT
ATCGTTCATTGCCGAAGACGATACAAAGAATCACCGACATAAACAGCGAC
CAATCAACCAAAACTGAAATATTAGATTTTGAAATGATGCAAGCTGTCCA
TGGGCACACTCACGAGAATTTAATCGCATTCTTTGAAGGACATGTTTTAC
CTAAAAAACAGAGGAGTAGACAACCACACCTTGACAATCTTTTGAACTTC
ACGAGACAATCTGGATATCGGAATGTGTACCAGGAAGACATGTGTTATAA
GGGAGGATGGGGATTCAACGGGATAGCAAAAGCTGGTGGAAAATGGACAA
ATATTGTGAAAGGGATTAGTAAATTTGCCATAGACGATACAGGTACATAA
TTTAGCTCTGTAAAATTAGTTGAGTCCGCTTAAACCCTTTTTCTGTCTTT
CTTGTCTTCAGTATTCATCATATCCGTGCACTCTCAGCATCAATCTTATG
CAATTTCAAAAAGTGGTCATTTCGGGGTTATCATAACAATATTTGAAAGT
ATTTAGACTGTATCCATCGTTTTCTACACCAGTACCAACCCGGATGCTGT
TACCTTTAGCCAACATTCGATATTGGAACATGCTAAAATTTTCGTTGTTT
TTCTGTTTCAGGTTTGACGTTCGCTTCATGCAAAATGATCGAGTCTTATT
CTGATAGTCTGAACATTTTCAACGATGATAAAGACTTATAACGGGCTCAA
CTACAATACGTACTACGTACGTCATATCGCTAAAAAGCTGAAAACTACGG
CATCGAATTTATTCTTGTTTTCAATGCTGTGTATCCCGCACGATTACGGC
GGTTACCGTGTACAAGGAGCTGATCACGGTCTCGCGGACTTTATCACGGA
AATGAGCCAACTTGAAAACACAATTACGTTCTTATTCGCGGATCACGGTA
ACACGTATACGGGATACGCTAGTACGTTAGACGGGCGTCATGAACAATAT
AATCCTCATTTCTTTACGATTGTACCGGGAAACGTTGTCGGGAAAATCGG
GAAATCATCAATGGATGCTCTACGTCGAAATCATCTTCGAATGGTGACTT
TGATAGACCTTCACCACACTGTTAAACATCTAGCTAATACCAATTACCAA
AACAAAGGTCTTTTAACAGAAGT

Coding sequence (CDS) from alignment at sc0000118:312872..315394-

>TCONS_00010920 ID=TCONS_00010920|Name=TCONS_00010920|organism=Clytia hemisphaerica|type=CDS|length=2754bp|location=Sequence derived from alignment at sc0000118:312872..315394- (Clytia hemisphaerica)
GTTTGACGTTCGCTTCATGCAAAATGATCGAGTCTTATTCTGATAGTCTG
AACATTTTCAACGATGATAAAGACTTATAAATGAATTCTAAGCGGCATCT
CTTATTTTTTCTGTTGGTACTTGTCTCCTATGGACTTTTGTACTTGTTCT
CCGCTTACACGAATGGTGATGTAACTTTCGATCCAGTAAGGTTGAAATTC
TTTATTAAACCGAAATTGTCTGGCATGCGATTGAGCAATGCAAGTGAAGT
CGAAGACCCGAGTAATAATTCTTCAATTTTAAAAATCACCCGTGAACCAG
CGTTGACAGTTACAGCAACATCAAAACCTTCAACACAAAGACTAAAATCG
TCAACAATGTTTTCAAAAACAACAGTCAACGCTCATTCTACAACACCCGC
CACGCCAACAAAAAACAAGTCCACGCCCGAAAATCCAACATCTTTGTCAA
CGCCCAAACCAACCACCACTGGACCGCCCGATCTTTGTCCCCATCCAACA
CTCCCACACAAAATTGAAATCCAAGCCAAAGACCAAATCAGTTGCAAACC
TTACATGCTGACCCCAAAATCTTGTAAATACGTAGCAAAGGAATATGTTT
ATAAATACAAAGACCACAAATGCGGGTCACAGAATGACGGGATAGAAAAC
GTCAATATTTGCCAATTCGTTGAAAAAGATGTTAAATTTAAATGTAACTT
TGAAGCATGCGGTGGTAACAAGGATCAACAAATTTACTTACACGTGTTTA
AAGACGATACGGGGTGGTATGAAGCTGTCAAACCTGGATTGAACAACTCC
AAATCACTCGAAAATGCTTTACTAGAACACGTCAACAAATTGAGAATAGC
AAAAGATTTTGTATTCTTAAGTTGTGGTGAAAATAAGACTAGAACACAAC
TGGTACACTTTGACTCAGTGCATTTTAAAGAAACCAAGCCACAAAAAGAA
CGTAAAAACACGAACAGATCTGATCGTACCGCTAAAATTAACATAAATGT
TGTTTGGTTAGATTCACTATCGCGTCGGCATTTCTATCGTTCATTGCCGA
AGACGATACAAAGAATCACCGACATAAACAGCGACCAATCAACCAAAACT
GAAATATTAGATTTTGAAATGATGCAAGCTGTCCATGGGCACACTCACGA
GAATTTAATCGCATTCTTTGAAGGACATGTTTTACCTAAAAAACAGAGGA
GTAGACAACCACACCTTGACAATCTTTTGAACTTCACGAGACAATCTGGA
TATCGGAATGTGTACCAGGAAGACATGTGTTATAAGGGAGGATGGGGATT
CAACGGGATAGCAAAAGCTGGTGGAAAATGGACAAATATTGTGAAAGGGA
TTAGTAAATTTGCCATAGACGATACAGGTTTGACGTTCGCTTCATGCAAA
ATGATCGAGTCTTATTCTGATAGTCTGAACATTTTCAACGATGATAAAGA
CTTATAAATGAATTCTAAGCGGCATCTCTTATTTTTTCTGTTGGTACTTG
TCTCCTATGGACTTTTGTACTTGTTCTCCGCTTACACGAATGGTGATGTA
ACTTTCGATCCAGTAAGGTTGAAATTCTTTATTAAACCGAAATTGTCTGG
CATGCGATTGAGCAATGCAAGTGAAGTCGAAGACCCGAGTAATAATTCTT
CAATTTTAAAAATCACCCGTGAACCAGCGTTGACAGTTACAGCAACATCA
AAACCTTCAACACAAAGACTAAAATCGTCAACAATGTTTTCAAAAACAAC
AGTCAACGCTCATTCTACAACACCCGCCACGCCAACAAAAAACAAGTCCA
CGCCCGAAAATCCAACATCTTTGTCAACGCCCAAACCAACCACCACTGGA
CCGCCCGATCTTTGTCCCCATCCAACACTCCCACACAAAATTGAAATCCA
AGCCAAAGACCAAATCAGTTGCAAACCTTACATGCTGACCCCAAAATCTT
GTAAATACGTAGCAAAGGAATATGTTTATAAATACAAAGACCACAAATGC
GGGTCACAGAATGACGGGATAGAAAACGTCAATATTTGCCAATTCGTTGA
AAAAGATGTTAAATTTAAATGTAACTTTGAAGCATGCGGTGGTAACAAGG
ATCAACAAATTTACTTACACGTGTTTAAAGACGATACGGGGTGGTATGAA
GCTGTCAAACCTGGATTGAACAACTCCAAATCACTCGAAAATGCTTTACT
AGAACACGTCAACAAATTGAGAATAGCAAAAGATTTTGTATTCTTAAGTT
GTGGTGAAAATAAGACTAGAACACAACTGGTACACTTTGACTCAGTGCAT
TTTAAAGAAACCAAGCCACAAAAAGAACGTAAAAACACGAACAGATCTGA
TCGTACCGCTAAAATTAACATAAATGTTGTTTGGTTAGATTCACTATCGC
GTCGGCATTTCTATCGTTCATTGCCGAAGACGATACAAAGAATCACCGAC
ATAAACAGCGACCAATCAACCAAAACTGAAATATTAGATTTTGAAATGAT
GCAAGCTGTCCATGGGCACACTCACGAGAATTTAATCGCATTCTTTGAAG
GACATGTTTTACCTAAAAAACAGAGGAGTAGACAACCACACCTTGACAAT
CTTTTGAACTTCACGAGACAATCTGGATATCGGAATGTGTACCAGGAAGA
CATGTGTTATAAGGGAGGATGGGGATTCAACGGGATAGCAAAAGCTGGTG
GAAAATGGACAAATATTGTGAAAGGGATTAGTAAATTTGCCATAGACGAT
ACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006131XLOC_006131Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010920-proteinTCONS_00010920-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010920-exon-sc0000118-1575043694:313653..315394TCONS_00010920-exon-sc0000118-1575043694:313653..315394Clytia hemisphaericaexon
TCONS_00010920-exon-sc0000118-1575043694:312872..313383TCONS_00010920-exon-sc0000118-1575043694:312872..313383Clytia hemisphaericaexon
TCONS_00010920-exon-sc0000118-1510915933:313653..315394TCONS_00010920-exon-sc0000118-1510915933:313653..315394Clytia hemisphaericaexon
TCONS_00010920-exon-sc0000118-1510915933:312872..313383TCONS_00010920-exon-sc0000118-1510915933:312872..313383Clytia hemisphaericaexon
TCONS_00010920-exon-sc0000118-1491911889:313653..315394TCONS_00010920-exon-sc0000118-1491911889:313653..315394Clytia hemisphaericaexon
TCONS_00010920-exon-sc0000118-1491911889:312872..313383TCONS_00010920-exon-sc0000118-1491911889:312872..313383Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000118supercontigsc0000118:312872..315394 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0741691	0.0507526	0.234411	0.231507	0.0233955	0	0.0243156	0.147358	0.252729	0.276358	0.237337	0.0924322	0.729167	0.458434	0.448227	0.70879	0.422581	0.592914	1.73268	1.877	0.884968	1.04727	0.757041	1.75017	1.58404	2.04469	0	0.050775	0.656291	0.605574
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004245DUF229
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010920 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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