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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010915 ID=TCONS_00010915|Name=TCONS_00010915|organism=Clytia hemisphaerica|type=transcript|length=960bp
GAGACTGCTATTCATTTACTAGAAACTCTCTACTGCGCACAGTGTTAACC
AAAGGACGAACAAGAGAAAACTGAGAGAACGGAACTTTGCAACATAACGA
TTTCGCAAGAATCAACAAACAAACACGCCAACAAGATGAACACGTATACA
ACAATCTCAATCCTGGCCACCATATGCTGTATGGTCACACTCACTCAATC
AAAACCCATGATGGATGATTCACTTTTCCTATTGGAAGAAACATACCCAC
AATGCTTTGGGGAGCAAGGAGCTAAAGATTGTCAATGTATCTGTCAAGGT
GCTTTCACTAAGTGTCTGGCAAAGAAAGCGAAAGGCACAAAAGAATTTAT
CCCAAATGCTTTGTTTTGCGTGCGAAATCAAATGGTATGTAATCAACCGA
ACGTTTGTAAACCAGTCGAATTGCTGAAGCTCAAAAGATGGGCACAAAAT
GTTAGCAAATCACTGATCTAAAGAAAAATGGGCTGGATATGTCACGCCGG
AGTCTAAACCCCTCGATTGCTATGAAGCAGAGAAATGTCACGAAACGTCA
ATGACAGTATCCTGGATGACTCCAAAACACGCTACTGACAAATGTTTGAA
GATCAGATGAAACTCCAATAAAAACTATAATGATATCGTGGTGCACATGC
GTGCCAAAGGAGCGTAAAATCACAAACAATCAACTTTCTAAAGTCAGTCT
AGTGGTTAAAATGCAAGAACTGTAAAAATATATTTCCGTCCTATGTCCTC
TCGGGGGATCTAGATCGAAGGATGATGAAAAGAATATATTATCTTATTTA
ATAGATAGCTAATTATTAATCTACAACAGttgatttaaattaaatttttc
ctttgtaaatatcaaaattcaaattttatatatCATAGTTTAACAATGTA
AATAGACCCTAAAAACGAAAAATTTATATCTATGAGccaaaaaaatgatg
aaaaataaat Run BLAST on NCBI protein sequence of TCONS_00010915-protein >TCONS_00010915-protein ID=TCONS_00010915-protein|Name=TCONS_00010915-protein|organism=Clytia hemisphaerica|type=polypeptide|length=111bp
MNTYTTISILATICCMVTLTQSKPMMDDSLFLLEETYPQCFGEQGAKDCQ
CICQGAFTKCLAKKAKGTKEFIPNALFCVRNQMVCNQPNVCKPVELLKLK
RWAQNVSKSLI Run BLAST on NCBI transcript from alignment at sc0000118:245242..246650- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010915 ID=TCONS_00010915|Name=TCONS_00010915|organism=Clytia hemisphaerica|type=transcript|length=1409bp|location=Sequence derived from alignment at sc0000118:245242..246650- (Clytia hemisphaerica)
GAGACTGCTATTCATTTACTAGAAACTCTCTACTGCGCACAGTGTTAACC
AAAGGACGAACAAGAGAAAACTGAGAGAACGGAACTTTGCAACATAACGA
TTTCGCAAGGTAAGGATATGTCAATCTTCAATATTGTGAGATAGGAAACA
TCTTCAAAGGAGACAAGTTTTTTTTTCGATTCAACGTGACATTTTGACGG
AGCACTCTTTGTTATAGTAGGAAATAATGAGAATCCATTTAACCTACATA
GCCATATATGAAATGTTTTCTTGTGTATGGTCTGAGCCTAAAACTCTAAC
ACCTCTAAGAGATTCTTCTTTTATTCTTCTCTTGATGCTTTGGGAATTAT
GTCGACGATTCCTTGCGTAGAAAACATTCAGGGTGACAAAGTAGCTTTCT
CATTTCCCCTTTGCGATAGTACTATTTAAAGATTTCCCCAAAGGAAATTT
TTCCAAAAAAAATTCTCCAAGTCTTCTAACTATTTCTTACTTTCCATTTT
TCAGAACNTTAGTATCAAATACAAATCTTCTAAATATTTCTCATTTTCCA
TTTTCCAGAATCAACAAACAAACACGCCAACAAGATGAACACGTATACAA
CAATCTCAATCCTGGCCACCATATGCTGTATGGTCACACTCACTCAATCA
AAACCCATGATGGATGATTCACTTTTCCTATTGGAAGAAACATACCCACA
ATGCTTTGGGGAGCAAGGAGCTAAAGATTGTCAATGTATCTGTCAAGGTG
CTTTCACTAAGTGTCTGGCAAAGAAAGCGAAAGGCACAAAAGAATTTATC
CCAAATGCTTTGTTTTGCGTGCGAAATCAAATGGTATGTAATCAACCGAA
CGTTTGTAAACCAGTCGAATTGCTGAAGCTCAAAAGATGGGCACAAAATG
TTAGCAAATCACTGATCTAAAGAAAAATGGGCTGGATATGTCACGCCGGA
GTCTAAACCCCTCGATTGCTATGAAGCAGAGAAATGTCACGAAACGTCAA
TGACAGTATCCTGGATGACTCCAAAACACGCTACTGACAAATGTTTGAAG
ATCAGATGAAACTCCAATAAAAACTATAATGATATCGTGGTGCACATGCG
TGCCAAAGGAGCGTAAAATCACAAACAATCAACTTTCTAAAGTCAGTCTA
GTGGTTAAAATGCAAGAACTGTAAAAATATATTTCCGTCCTATGTCCTCT
CGGGGGATCTAGATCGAAGGATGATGAAAAGAATATATTATCTTATTTAA
TAGATAGCTAATTATTAATCTACAACAGTTGATTTAAATTAAATTTTTCC
TTTGTAAATATCAAAATTCAAATTTTATATATCATAGTTTAACAATGTAA
ATAGACCCTAAAAACGAAAAATTTATATCTATGAGCCAAAAAAATGATGA
AAAATAAAT Coding sequence (CDS) from alignment at sc0000118:245242..246650- >TCONS_00010915 ID=TCONS_00010915|Name=TCONS_00010915|organism=Clytia hemisphaerica|type=CDS|length=336bp|location=Sequence derived from alignment at sc0000118:245242..246650- (Clytia hemisphaerica)
ATGAACACGTATACAACAATCTCAATCCTGGCCACCATATGCTGTATGGT
CACACTCACTCAATCAAAACCCATGATGGATGATTCACTTTTCCTATTGG
AAGAAACATACCCACAATGCTTTGGGGAGCAAGGAGCTAAAGATTGTCAA
TGTATCTGTCAAGGTGCTTTCACTAAGTGTCTGGCAAAGAAAGCGAAAGG
CACAAAAGAATTTATCCCAAATGCTTTGTTTTGCGTGCGAAATCAAATGG
TATGTAATCAACCGAACGTTTGTAAACCAGTCGAATTGCTGAAGCTCAAA
AGATGGGCACAAAATGTTAGCAAATCACTGATCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010915-exon-sc0000118-1575043694:246542..246650 | TCONS_00010915-exon-sc0000118-1575043694:246542..246650 | Clytia hemisphaerica | exon |
| TCONS_00010915-exon-sc0000118-1575043694:245242..246092 | TCONS_00010915-exon-sc0000118-1575043694:245242..246092 | Clytia hemisphaerica | exon |
| TCONS_00010915-exon-sc0000118-1510915933:246542..246650 | TCONS_00010915-exon-sc0000118-1510915933:246542..246650 | Clytia hemisphaerica | exon |
| TCONS_00010915-exon-sc0000118-1510915933:245242..246092 | TCONS_00010915-exon-sc0000118-1510915933:245242..246092 | Clytia hemisphaerica | exon |
| TCONS_00010915-exon-sc0000118-1491911889:246542..246650 | TCONS_00010915-exon-sc0000118-1491911889:246542..246650 | Clytia hemisphaerica | exon |
| TCONS_00010915-exon-sc0000118-1491911889:245242..246092 | TCONS_00010915-exon-sc0000118-1491911889:245242..246092 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000118 | supercontig | sc0000118:245242..246650 - |
Blast
The following BLAST results are available for this feature:
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