TCONS_00010914 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010914
Unique NameTCONS_00010914
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1676

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010914 ID=TCONS_00010914|Name=TCONS_00010914|organism=Clytia hemisphaerica|type=transcript|length=1676bp
GTttgattgacatcccctgggaAATGTCAATCAATACTTTTTGCGATACT
GGTACCATTTTATCTCCagttaaaaaattacttttaataaAGATAACAAC
AGGAATGAATTAGAATATAATATACTATAGTATCTCCAGTCACCAACAAA
CACCCAACCCAATAAACATCCAACCTTCGACAATCGGAGAAAAGTGATGC
AAGTTTCCAGGCAAAGATACTTtcacttttagaatttcattgcCATGTGA
AATATCACGAAAATTGTATTTTTCGGAACGCTATCTTCTTTATGCGGGGG
AGAAGCTTGTTACCATAAAAACACGTTCCTGAAAATAGACTCACcgaatc
aacatcaaaacagaACTTCGGGCAAGAAGTCTTTTTACTATCCAGCTCCA
AGATGGGTATCTCGAGAGATAGCTGGCATAAACGCCGACACACTGGAGGT
CGCAAGAAGCCTCTTACCAAAAAGAGGAAGCACTGTCTTGGACGTCCTGC
TGCCAACACCAAGATTGGTGTAAAGCGAATCCACCCAGTGAGATGTCGAG
GTGGAAACTTGAAATTCAGAGCCATGCGATTGGATGCTGGAAATTACTCC
TGGGGATCAGAGAGTAtgttatatttttgataatgtaaTACTCGAGTAGG
AAATTTTCACACAAGTTACAAACAAGTACTGTTACAAAATATTGgagaaa
tgatgaaatttaatattGAGGGATATGTGATCGTTTTGATCAAATCATAC
TCCGTTGATCCTGTTTTGTCATAGTTACACTGATCTCCAAATGAGCCAGA
CTAGGAGTTAATAAACTTGACTAGGGAAAGCTTTATTTTGaaaaggattt
aaaaattgaaaatgataaatattgATTACTTTGCTTCAGGTATCACACGA
AAGACCAGAGTCCTTGATGTTGTCTACAATGCTAGCAACAATGAACTTGT
ACGTACCAAAACTTTGGTCAAGAACGCCATTATCCTTATTGATGCCACAC
CATTTAAGCAATGGTTTGAAGCACATTATGGAGTTGCTGTTGGACGCAAG
AAGGGACACAAAATACCCGAAGGTGAAGAAGATCCTTTAAACAAAACAAG
GTCCAAACACGCCAAAGCTAAAATTGCAGCACGAAAACCAGACTCTAAAA
TCGATCACCATTTAGAAGAACAATTCACCAGTGGACGTGTTATGGCATGC
ATTTCATCTCGACCTGGACAATCTGGACGATGTGATGGTTACATCTTAGA
AGGAAAAGAACTCGATttctatttgaaaaaattaaaaacaaagaaaggca
AATAGATCCCTTCACTATAAATGTTATCGTGTCATTTACTACCCCTTAGT
TTCCAATGGGTCGCTGCCCGATTTCAAGCTTTTGTCATTATTTGTttgaa
gcattttttgtgctataattgtttttcaatcattatggacctaccccggt
agggtggaggtcctataaattaacctgtgttagttcgttcgtctgttacc
aacttttctcaggattgaatcataggaatctttttggacctaccccgttg
gggtagaggtcctataaattaaccgatgtccgttcgtccgtctgttacca
gcttttctcaggattggctcattagttttttctaatttttggcacaatga
tgcaaaatggcaatgcccaaaatgtg
Run BLAST on NCBI

protein sequence of TCONS_00010914-protein

>TCONS_00010914-protein ID=TCONS_00010914-protein|Name=TCONS_00010914-protein|organism=Clytia hemisphaerica|type=polypeptide|length=147bp
MINIDYFASGITRKTRVLDVVYNASNNELVRTKTLVKNAIILIDATPFKQ
WFEAHYGVAVGRKKGHKIPEGEEDPLNKTRSKHAKAKIAARKPDSKIDHH
LEEQFTSGRVMACISSRPGQSGRCDGYILEGKELDFYLKKLKTKKGK
Run BLAST on NCBI

transcript from alignment at sc0000118:201194..208131-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010914 ID=TCONS_00010914|Name=TCONS_00010914|organism=Clytia hemisphaerica|type=transcript|length=6938bp|location=Sequence derived from alignment at sc0000118:201194..208131- (Clytia hemisphaerica)
GTTTGATTGACATCCCCTGGGAAATGTCAATCAATACTTTTTGCGATACT
GGTACCATTTTATCTCCAGTTAAAAAATTACTTTTAATAAAGATAACAAC
AGGAATGAATTAGAATATAATATACTATAGTATCTCCAGTCACCAACAAA
CACCCAACCCAATAAACATCCAACCTTCGACAATCGGAGAAAAGTGATGC
AAGTTTCCAGGCAAAGATACTTTCACTTTTAGAATTTCATTGCCATGTGA
AATATCACGAAAATTGTATTTTTCGGAACGCTATCTTCTTTATGCGGGGG
AGAAGCTTGTTACCATAAAAACACGTTCCTGAAAATAGACTCACCGAATC
AACATCAAAACAGAACTTCGGGCAAGAAGTCTTTTTACTATCCAGCTCCA
AGATGGGTAGGTTTACAATATTATACTACACTTTATCAGCAAGAATCTGC
CCAATCGAGTGGCTTGGCACTTCCTAAACAACGCAATTGCCTGGTAAAGT
TATCATTGTATCGATTTTTACTGGTATTGCCCTACTTGTTTTGAGAATGA
CAATTTAAACTTGGATGTTATTGACCACCTTCATCGGTTTGACTTTTAGG
TATCTCGAGAGATAGCTGGCATAAACGCCGACACACTGGAGGTCGCAAGA
AGCCTCTTACCAAAAAGAGGAAGCACTGTCTTGGACGTCCTGCTGCCAAC
ACCAAGGTAAACAAATACTGGTTTGGGTTCAACCATTAAAGTTGGTCAAG
TGGAAATGATTATCATATTCACATTTTGATGATGATTGTCATAATTTTGT
TAGTCTGTGCTTTGATGTTGAATAGCAGATTAATTTGTCAAACTACTGAC
ATGAAAACAGATTTGTTTGAGTCTAATGATTGGTGAAGGCAATAGCTAAT
TATTACAGAGATCTCATCATTTATGCCATTGCCATCTTGTTAATTGTTCT
TTTACTATTATTTTTATTTAGTCTGCCTTTGGGTGGCTAATTCTTATAAG
GCACTTGAAGGAAAAATATAATAGCAACTGATAAATGTCTCTTCACAATG
AAAATTTATAAATTTAATTGTAAATTCAGATTGGTGTAAAGCGAATCCAC
CCAGTGAGATGTCGAGGTGGAAACTTGAAATTCAGAGCCATGCGATTGGA
TGCTGGAAATTACTCCTGGGGATCAGAGAGTATGTTATATTTTTGATAAT
GTAATACTCGAGTAGGAAATTTTCACACAAGTTACAAACAAGTACTGTTA
CAAAATATTGGAGAAATGATGAAATTTAATATTGAGGGATATGTGATCGT
TTTGATCAAATCATACTCCGTTGATCCTGTTTTGTCATAGTTACACTGAT
CTCCAAATGAGCCAGACTAGGAGTTAATAAACTTGACTAGGGAAAGCTTT
ATTTTGAAAAGGATTTAAAAATTGAAAATGATAAATATTGATTACTTTGC
TTCAGGTATCACACGAAAGACCAGAGTCCTTGATGTTGTCTACAATGCTA
GCAACAATGAACTTGTACGTACCAAAACTTTGGTCAAGAACGCCATTATC
CTTATTGATGCCACACCATTTAAGCAATGGTAAGAGAATTGCTGGGATTA
AGCAGACCGTATCAATCTAACTCCATGCAATAATTTAAGTTCCATTAAAA
TTCATTGAACTCTCACATTATCAGATGTAAGAATGAGTTTGATTAATGGA
TTGCAGTTGGATCACTTTAACCTCATTTGTTTGAAAATTCATAGAACTCT
ACAGAATATTAGCTTCTGTTTTTAAAAGCCTAATTCAGAATGTTAATTGG
GAATTACTTTCACTAACAAATCACACACTTTTCTTCATCCTATCAATTTG
GCCCCGCAAATNATGTATGAGATATGTTTGCATATGTATTTGAAGTTTGA
TGAGGATGATTTGCTACGATTTTGGATCATTTTGGTTCATTTCGGTTCAT
TTCGAGAAACTGTTTAAAAGTGAAAGTGAAAGTATAAAATTATATGTGGA
CGTAGCTTACACAAAACACTGGGAATTTCAAGGCAGCATTTGGACAAATA
CAGTTGACTTTTTGGTCTTTTTCTCTTGGATAGATTCAAATNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTTACAGTATATACTATCAATTTGG
ACCAAAAAAACTTTAAATAACTTTGCAGAACAGTGTTTTTCAAAAAAGGG
TCTCTAAGGGTCGATGACCTCCTTAAAGGGTGTGCAAATTAGTAATTGTT
GTGGGCTCTTTTAATGAAATAGCTGAAATGCACACTTAAAATGAGTAAAA
CTTTCGACAGCTTTCAATTTTACAGGTTTCTTTGCCCTTTTTACCTAAAT
TCATAAAGATGCGTGAAAATTGCGCAGAATTTAATGGAATTAGGGTAAAT
GGATTGTTTGCATAAGTGAAACGTGAGGAACTAATTAAACTTTTAGTGAC
CAAACTAATTGAACCCCTTTTGCTTCCTAAATTGTTTGTCTGGTTTGACA
AGTTTGATATGTCTAGTTTAGTGGGAACATGGATTATTACCAAGGTAATA
GGCTAGTTGACAATGATGTTTTAAATCAAAATCTCTTACTATTTTGGATG
ATTACAAAAGTTTCTGAGTCACTAGCAAAATTTAATTGAAAGTTACTATA
ATCTTTATCTAATCAACTTGTCGAATTTGTTAGTTTTAGGAAGAACAAGT
ATACCAAATTCTGAATGGTGTACATCGAGTTTTTGCTGTAATTTCTGGCA
TTGTAATATTGAAAGATAAAAATGTACTACAGTTATGATACCTTAAACAA
AATATTTGTTCTTTTACTTAAGATTTTTCTAGATATGAACAAGACTTCAA
GTAACAACCCATCCTCGCTGATTCAGCATTCAAACATTTTTATTCAATAT
TTTGCCATAATGACGTACAGTGGTGAAATCTTGACGTCTAATGTGCACAT
TTCTTAAGACCACTCTCCGAGTAATACACCAATACTCACTACCTTTATTG
GTAGCCATGGATTGTGATTGAGTCATAGGTGTGCAAGATTATCAACTTTT
TGTGCTTTGTTACAGTGCTGTTAAACTTTTGAAGCTTCTGTTTCAAAATG
TTGCCCTACCATAACTTCACTAAAACTTGTACAATGAACATTCCATTTAA
CTTTGTTTTCAAGTTATTTGGAAAAGCTAACCATATATTAATATTTTACA
TGTAAAACATCTTCTTCCTCTTAATTTCAGGTTTGAAGCACATTATGGAG
TTGCTGTTGGACGCAAGAAGGGACACAAAATAGTAAGCATGTTATATATA
TAGATTTGATGGTTTTATATTGCTCAATTTATTGAAGTGTGGTAAAGGTT
TTTCTAGTTCATGGTGAAATATAGGCACGTTAAAGCTAATGAGCAGAAGC
CTTTGGTATCTGTCCATTCGTTCCCAAGTGCCAATATTATCAAAAGGAAG
GATAAATGCATTTAAGATTTTAATTCTTTATCTGCTGGAAGCCTCCTTAC
ATTCAAACTCACACCTGATAAATCTTTGAAAATGTATTCGTGATATTCAT
GGCGTAATGTTTCCAACGGAAAGACCCCGGTATTTGCCAGTAATGGCAAG
TTTTATACAACTTTTGTCTCGTATAAATTTGCCACTACTTGCTAAAACCA
GGGTATTTTCGTAGAAAACACACGTCGTGAACATAATGAATACTGTATGG
TGTTTAAAACAACCTTAAAATGCAATGAAATGAAATTTTTGTCGGGCACG
TTAAAGCTAATGAGCAGAAGATTTCGGTAACTGTTCATTCGTTCCCAAGT
GCCAAAATAGTCAATTAGGAAGGATAAATGCATTTGAGATATTGATTCTT
TATCTGCTGGAAGCCTCCTGACATTTCTTTCAGTGTATTTTATTGGTGAA
TTGAACTTCATCTAACTAGAAAAGGTAGCTTAAAGATGCAATGATGATTA
TTAACCTTAGGACACCTTCGGAGATCAGATTGATCTGTGAGAGCAATGTT
GGTAACTGAAGCATCTTAATATAAAAAACATTTTACAGTTCTGTCGATTT
GATAGATATGCAATATGATAACTTCAAATGTGTTGTTGGGAACAGCCAAG
GGTATCTCCCATTGCCCTACATTAGANATAACTTCAAATGTGTTGTTGGG
AACAGCCAAGGGTATCTCCCATTGCCCTGCATTAGACCCTGTTGTAAGCC
CTCAATATTTTGATTTGATGATTAACTAGAACCATGAATGCAATGATGAT
TAGCAACCTTAGGACACCTTCGGAGATCAGATAGATCAGTGAGAGTAATC
TTGGTAACTGAAGCATTCATTCCATGAATTTTCACTGGTCATGCTTTCTA
AGAGAGAACTTGAGTCCCAAAATTTGGTTGTAATGTTAGTAAGTGAGGAC
ACCCCTAAATTCAAAATTCCTACATTCCTGTACAGCCTGTCCTGTATATA
CCAGATTAAGAATGTAGTGCTGGTCTCCTGTCTAGCTGGATTATTACTTG
AATGTCCAACAGTAAAATTTTGGATGCAATGATGATTAGTAACCTTAGGA
CACCTTCGGAGATCAGATTGATCGTTGAGAGTAACCTTGGTAACTGATGC
ATCCATGAAATTTCAGTTAATTTATTATTTTTGCTAATGTTATTATGTCC
CTAACTAAAACATCCATTTTAACCATTCAGCCCGAAGGTGAAGAAGATCC
TTTAAACAAAACAAGGTCCAAACACGCCAAAGCTAAAATTGCAGCACGAA
AACCAGACTCTAAAATCGATCACCATTTAGAAGAACAATTCACCAGTGGA
CGTGTTATGGGTAAGTCTAACTCGAGTATCTCATGGCTGTCGAGATGCAA
TGATGATTAGTAACCTTAGGACACCTTCGGAGATCTGATTGATCGATGAG
AGTAATCTTGGTAACTGAAGCATCTTAATTGAAAAACATTTTACTATTTT
TGCCGACTGGAGAAATTTTAACTTCAATTTTTGTCCCCAACAAGTCTTTG
CGAAAAAAATTTATCTCGCCTCCCTAGTATTTCGAAAGTAAAATTCCTTC
TCGCAGCCCAGTAAAAATCAGTGCAATAGACTTTACCGGAGTTTTTTATT
TTCCCAAAAAAGCGATACATTGTGGGATTGTTTCGGGATTGTGATCAGTA
GAATTTCCTCGAGGAATCCCTAAGAGAATTCTATTGTAATACTCCCGAAA
CAATCCCACAATGTATCGTTTTTTAGGAAAATCAGAAACTCTGATAATGT
CTATTTGAAGAGTTTAGCCCTAGGCTTGGTTTGCAAAACTTCATTTCCCT
TCTAAGAGTGTTTGCTAATGATGAACTGCCATAGTTTAAACTCGTCTTTT
TTTCCAGCATGCATTTCATCTCGACCTGGACAATCTGGACGATGTGATGG
TTACATCTTAGAAGGAAAAGAACTCGATTTCTATTTGAAAAAATTAAAAA
CAAAGAAAGGCAAATAGATCCCTTCACTATAAATGTTATCGTGTCATTTA
CTACCCCTTAGTTTCCAATGGGTCGCTGCCCGATTTCAAGCTTTTGTCAT
TATTTGTTTGAAGCATTTTTTGTGCTATAATTGTTTTTCAATCATTATGG
ACCTACCCCGGTAGGGTGGAGGTCCTATAAATTAACCTGTGTTAGTTCGT
TCGTCTGTTACCAACTTTTCTCAGGATTGAATCATAGGAATCTTTTTGGA
CCTACCCCGTTGGGGTAGAGGTCCTATAAATTAACCGATGTCCGTTCGTC
CGTCTGTTACCAGCTTTTCTCAGGATTGGCTCATTAGTTTTTTCTAATTT
TTGGCACAATGATGCAAAATGGCAATGCCCAAAATGTG

Coding sequence (CDS) from alignment at sc0000118:201194..208131-

>TCONS_00010914 ID=TCONS_00010914|Name=TCONS_00010914|organism=Clytia hemisphaerica|type=CDS|length=1776bp|location=Sequence derived from alignment at sc0000118:201194..208131- (Clytia hemisphaerica)
CATGCATTTCATCTCGACCTGGACAATCTGGACGATGTGATGGTTACATC
TTAGAAGGAAAAGAACTCGATTTCTATTTGAAAAAATTAAAAACAAAGAA
AGGCAAATAGCCCGAAGGTGAAGAAGATCCTTTAAACAAAACAAGGTCCA
AACACGCCAAAGCTAAAATTGCAGCACGAAAACCAGACTCTAAAATCGAT
CACCATTTAGAAGAACAATTCACCAGTGGACGTGTTATGGGTTTGAAGCA
CATTATGGAGTTGCTGTTGGACGCAAGAAGGGACACAAAATAATGATAAA
TATTGATTACTTTGCTTCAGGTATCACACGAAAGACCAGAGTCCTTGATG
TTGTCTACAATGCTAGCAACAATGAACTTGTACGTACCAAAACTTTGGTC
AAGAACGCCATTATCCTTATTGATGCCACACCATTTAAGCAATGCATGCA
TTTCATCTCGACCTGGACAATCTGGACGATGTGATGGTTACATCTTAGAA
GGAAAAGAACTCGATTTCTATTTGAAAAAATTAAAAACAAAGAAAGGCAA
ATAGCCCGAAGGTGAAGAAGATCCTTTAAACAAAACAAGGTCCAAACACG
CCAAAGCTAAAATTGCAGCACGAAAACCAGACTCTAAAATCGATCACCAT
TTAGAAGAACAATTCACCAGTGGACGTGTTATGGGTTTGAAGCACATTAT
GGAGTTGCTGTTGGACGCAAGAAGGGACACAAAATAATGATAAATATTGA
TTACTTTGCTTCAGGTATCACACGAAAGACCAGAGTCCTTGATGTTGTCT
ACAATGCTAGCAACAATGAACTTGTACGTACCAAAACTTTGGTCAAGAAC
GCCATTATCCTTATTGATGCCACACCATTTAAGCAATGCATGCATTTCAT
CTCGACCTGGACAATCTGGACGATGTGATGGTTACATCTTAGAAGGAAAA
GAACTCGATTTCTATTTGAAAAAATTAAAAACAAAGAAAGGCAAATAGCC
CGAAGGTGAAGAAGATCCTTTAAACAAAACAAGGTCCAAACACGCCAAAG
CTAAAATTGCAGCACGAAAACCAGACTCTAAAATCGATCACCATTTAGAA
GAACAATTCACCAGTGGACGTGTTATGGGTTTGAAGCACATTATGGAGTT
GCTGTTGGACGCAAGAAGGGACACAAAATAATGATAAATATTGATTACTT
TGCTTCAGGTATCACACGAAAGACCAGAGTCCTTGATGTTGTCTACAATG
CTAGCAACAATGAACTTGTACGTACCAAAACTTTGGTCAAGAACGCCATT
ATCCTTATTGATGCCACACCATTTAAGCAATGCATGCATTTCATCTCGAC
CTGGACAATCTGGACGATGTGATGGTTACATCTTAGAAGGAAAAGAACTC
GATTTCTATTTGAAAAAATTAAAAACAAAGAAAGGCAAATAGCCCGAAGG
TGAAGAAGATCCTTTAAACAAAACAAGGTCCAAACACGCCAAAGCTAAAA
TTGCAGCACGAAAACCAGACTCTAAAATCGATCACCATTTAGAAGAACAA
TTCACCAGTGGACGTGTTATGGGTTTGAAGCACATTATGGAGTTGCTGTT
GGACGCAAGAAGGGACACAAAATAATGATAAATATTGATTACTTTGCTTC
AGGTATCACACGAAAGACCAGAGTCCTTGATGTTGTCTACAATGCTAGCA
ACAATGAACTTGTACGTACCAAAACTTTGGTCAAGAACGCCATTATCCTT
ATTGATGCCACACCATTTAAGCAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006128XLOC_006128Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010914-exon-sc0000118-1575043694:207726..208131TCONS_00010914-exon-sc0000118-1575043694:207726..208131Clytia hemisphaericaexon
TCONS_00010914-exon-sc0000118-1575043694:207426..207532TCONS_00010914-exon-sc0000118-1575043694:207426..207532Clytia hemisphaericaexon
TCONS_00010914-exon-sc0000118-1575043694:206553..207052TCONS_00010914-exon-sc0000118-1575043694:206553..207052Clytia hemisphaericaexon
TCONS_00010914-exon-sc0000118-1575043694:203750..203801TCONS_00010914-exon-sc0000118-1575043694:203750..203801Clytia hemisphaericaexon
TCONS_00010914-exon-sc0000118-1575043694:202222..202351TCONS_00010914-exon-sc0000118-1575043694:202222..202351Clytia hemisphaericaexon
TCONS_00010914-exon-sc0000118-1575043694:201194..201674TCONS_00010914-exon-sc0000118-1575043694:201194..201674Clytia hemisphaericaexon
TCONS_00010914-exon-sc0000118-1510915933:207726..208131TCONS_00010914-exon-sc0000118-1510915933:207726..208131Clytia hemisphaericaexon
TCONS_00010914-exon-sc0000118-1510915933:207426..207532TCONS_00010914-exon-sc0000118-1510915933:207426..207532Clytia hemisphaericaexon
TCONS_00010914-exon-sc0000118-1510915933:206553..207052TCONS_00010914-exon-sc0000118-1510915933:206553..207052Clytia hemisphaericaexon
TCONS_00010914-exon-sc0000118-1510915933:203750..203801TCONS_00010914-exon-sc0000118-1510915933:203750..203801Clytia hemisphaericaexon
TCONS_00010914-exon-sc0000118-1510915933:202222..202351TCONS_00010914-exon-sc0000118-1510915933:202222..202351Clytia hemisphaericaexon
TCONS_00010914-exon-sc0000118-1510915933:201194..201674TCONS_00010914-exon-sc0000118-1510915933:201194..201674Clytia hemisphaericaexon
TCONS_00010914-exon-sc0000118-1491911889:207726..208131TCONS_00010914-exon-sc0000118-1491911889:207726..208131Clytia hemisphaericaexon
TCONS_00010914-exon-sc0000118-1491911889:207426..207532TCONS_00010914-exon-sc0000118-1491911889:207426..207532Clytia hemisphaericaexon
TCONS_00010914-exon-sc0000118-1491911889:206553..207052TCONS_00010914-exon-sc0000118-1491911889:206553..207052Clytia hemisphaericaexon
TCONS_00010914-exon-sc0000118-1491911889:203750..203801TCONS_00010914-exon-sc0000118-1491911889:203750..203801Clytia hemisphaericaexon
TCONS_00010914-exon-sc0000118-1491911889:202222..202351TCONS_00010914-exon-sc0000118-1491911889:202222..202351Clytia hemisphaericaexon
TCONS_00010914-exon-sc0000118-1491911889:201194..201674TCONS_00010914-exon-sc0000118-1491911889:201194..201674Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010914-proteinTCONS_00010914-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000118supercontigsc0000118:201194..208131 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
911.575	941.322	1030.29	1095.7	852.16	697.645	934.537	977.744	1384.24	1296.93	1449.15	1776.25	2027.06	2122.24	1863.32	1754.17	1934.87	1998.9	1003.51	1089.91	1786.25	1766.4	1414.37	1365.08	1395.13	1474.33	1732.88	1689.92	1142.63	1177.78
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR022309Ribosomal_S8e/biogenesis_NSA2
Blast
[Close]
BLAST of TCONS_00010914 vs. Swiss-Prot (Human)
Match: RS8 (40S ribosomal protein S8 OS=Homo sapiens GN=RPS8 PE=1 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 2.063e-49
Identity = 84/140 (60.00%), Postives = 109/140 (77.86%), Query Frame = 1 
Query:  853 KLKMINIDYFASGITRKTRVLDVVYNASNNELVRTKTLVKNAIILIDATPFKQWFEAHYGVAVGRKKGHKIPEGEEDPLNKTRSKHAKAKIAARKPDSKIDHHLEEQFTSGRVMACISSRPGQSGRCDGYILEGKELDFY 1272
            +L + N  + +   TRKTR++DVVYNASNNELVRTKTLVKN I+LID+TP++QW+E+HY + +GRKKG K+   EE+ LNK RSK  + K   RK ++KI   LEEQF  G+++ACI+SRPGQ GR DGY+LEGKEL+FY
Sbjct:   59 RLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFY 198

HSP 2 Score: 116.316 bits (290), Expect = 2.333e-29
Identity = 53/70 (75.71%), Postives = 61/70 (87.14%), Query Frame = 1 
Query:  403 MGISRDSWHKRRHTGGRKKPLTKKRKHCLGRPAANTKIGVKRIHPVRCRGGNLKFRAMRLDAGNYSWGSE 612
            MGISRD+WHKRR TGG++KP  KKRK+ LGRPAANTKIG +RIH VR RGGN K+RA+RLD GN+SWGSE
Sbjct:    1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSE 70
The following BLAST results are available for this feature:
BLAST of TCONS_00010914 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RS82.063e-4960.0040S ribosomal protein S8 OS=Homo sapiens GN=RPS8 P... [more]
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