TCONS_00010913 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010913
Unique NameTCONS_00010913
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length905

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010913 ID=TCONS_00010913|Name=TCONS_00010913|organism=Clytia hemisphaerica|type=transcript|length=905bp
aagtgtttaaaaataaaagttgcGAAATGGTTCATTATACTGAAGTGAAG
CACAAGCATGGCCATAGATGCCTTCTTCGGCTTGAAGATGAAGATACAAG
TTTGGAAGACTTTTGGAAAGGAATTGGTGAAAAAGGTGCCATATCTGGAA
GTGCTCTCCCAGCTGCATACAAAAGTACATCTACTTATGTCTATCGCAAA
ATGGGCCAAACGGAATTTGAACTAacgatgaaaaatcaaaaactccagtG
GCCTTACATAACAAACCCAAGAAACAACCCAAAGTATAATGGTGAAAAAT
GGATGACAGAATCTGTTCAACATACCAGAGAGTTTAAACAGCAAACACAA
TCTTGTCCTAATGTCGTTGAAATTCAAGTAAATAAATTtggatataaaaa
tataaaaaaagacgCTATACCTCAGAAAGGGTCATTCAGTGTTCAACCAA
AAGGAAAAGAAGTTGTAAAATTTAATATCACAAACAAAGAAAGATTAGCT
GGaacagaaaaaatcaatttagGGTTAAAAGGTGGTGCTAACGTGGATAA
ATTCAATGAAAGTGTGATCAGTGTTTCCAAGGTGAACCCAGAAAGTTGGC
TAAATCGGAGTAAGATTTTGAGATGGGTTCGACGAAACAAATTGCAAGCA
ACGTTAATTGCTATTGGTATAATAATTGATGCTACAATGATAACTTTATC
AGTGAAGGCCCCCCTCTCCTTGAGACAGACCCGACCCCAACCTATAAAGA
TCCTCCAGTTACTGATTTTTGTATCTGCGACACTATTGGAGGACCAGAGT
TGGAGGAAGATTTGAATGTGTTTGATGCACCTTCACTTGAGCTTTGCTTG
GATGGTGCATATGGGGCACCATGTGGCGATTATGAGACTAATTAATGGAG
TCTAT
Run BLAST on NCBI

protein sequence of TCONS_00010913-protein

>TCONS_00010913-protein ID=TCONS_00010913-protein|Name=TCONS_00010913-protein|organism=Clytia hemisphaerica|type=polypeptide|length=270bp
VFKNKSCEMVHYTEVKHKHGHRCLLRLEDEDTSLEDFWKGIGEKGAISGS
ALPAAYKSTSTYVYRKMGQTEFELTMKNQKLQWPYITNPRNNPKYNGEKW
MTESVQHTREFKQQTQSCPNVVEIQVNKFGYKNIKKDAIPQKGSFSVQPK
GKEVVKFNITNKERLAGTEKINLGLKGGANVDKFNESVISVSKVNPESWL
NRSKILRWVRRNKLQATLIAIGIIIDATMITLSVKAPLSLRQTRPQPIKI
LQLLIFVSATLLEDQSWRKI
Run BLAST on NCBI

transcript from alignment at sc0000118:195824..196951-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010913 ID=TCONS_00010913|Name=TCONS_00010913|organism=Clytia hemisphaerica|type=transcript|length=1128bp|location=Sequence derived from alignment at sc0000118:195824..196951- (Clytia hemisphaerica)
AAGTGTTTAAAAATAAAAGTTGCGAAATGGTTCATTATACTGAAGTGAAG
CACAAGCATGGCCATAGATGCCTTCTTCGGCTTGAAGATGAAGATACAAG
TTTGGAAGACTTTTGGAAAGGAATTGGTGAAAAAGGTGCCATATCTGGAA
GTGCTCTCCCAGCTGCATACAAAAGTACATCTACTTATGTCTATCGCAAA
ATGGGCCAAACGGAATTTGAACTAACGATGAAAAATCAAAAACTCCAGTG
GCCTTACATAACAAACCCAAGAAACAACCCAAAGTATAATGGTGAAAAAT
GGATGACAGAATCTGTTCAACATACCAGAGAGTTTAAACAGCAAACACAA
TCTTGTCCTAATGTCGTTGAAATTCAAGTAAATAAATTTGGATATAAAAA
TATAAAAAAAGACGCTATACCTCAGAAAGGGTCATTCAGTGTTCAACCAA
AAGGAAAAGAAGTTGTAAAATTTAATATCACAAACAAAGAAAGATTAGCT
GGAACAGAAAAAATCAATTTAGGGTTAAAAGGTGGTGCTAACGTGGATAA
ATTCAATGAAAGTGTGATCAGTGTTTCCAAGGTGAACCCAGAAAGTTGGC
TAAATCGGAGTAAGATTTTGAGATGGGTTCGACGAAACAAATTGCAAGCA
ACGTTAATTGCTATTGGTATAATAATTGATGCTACAATGATAACTTTATC
AGTGATCAACGATAATGGTTCATTTGGTGAATCAACGCAGATCACACTTG
GTCAAATATCAGGAAGCATGGGAGGAGCTACGATTGGTGCTGCCTTAGGA
AGTATTTTACCAGGATTGGGAAGCTTTCTAGGGGGAGTGCTTGGTGGATT
TATTGGTTCAATAATCGGTGAGGGTCTTGTTAAACTAGGAAGGTATTTGT
TTTGTGCATCTCCGGTTGCACCAGGTGAAGGCCCCCCTCTCCTTGAGACA
GACCCGACCCCAACCTATAAAGATCCTCCAGTTACTGATTTTTGTATCTG
CGACACTATTGGAGGACCAGAGTTGGAGGAAGATTTGAATGTGTTTGATG
CACCTTCACTTGAGCTTTGCTTGGATGGTGCATATGGGGCACCATGTGGC
GATTATGAGACTAATTAATGGAGTCTAT

Coding sequence (CDS) from alignment at sc0000118:195824..196951-

>TCONS_00010913 ID=TCONS_00010913|Name=TCONS_00010913|organism=Clytia hemisphaerica|type=CDS|length=1626bp|location=Sequence derived from alignment at sc0000118:195824..196951- (Clytia hemisphaerica)
GTGAAGGCCCCCCTCTCCTTGAGACAGACCCGACCCCAACCTATAAAGAT
CCTCCAGTTACTGATTTTTGTATCTGCGACACTATTGGAGGACCAGAGTT
GGAGGAAGATTTGAGTGTTTAAAAATAAAAGTTGCGAAATGGTTCATTAT
ACTGAAGTGAAGCACAAGCATGGCCATAGATGCCTTCTTCGGCTTGAAGA
TGAAGATACAAGTTTGGAAGACTTTTGGAAAGGAATTGGTGAAAAAGGTG
CCATATCTGGAAGTGCTCTCCCAGCTGCATACAAAAGTACATCTACTTAT
GTCTATCGCAAAATGGGCCAAACGGAATTTGAACTAACGATGAAAAATCA
AAAACTCCAGTGGCCTTACATAACAAACCCAAGAAACAACCCAAAGTATA
ATGGTGAAAAATGGATGACAGAATCTGTTCAACATACCAGAGAGTTTAAA
CAGCAAACACAATCTTGTCCTAATGTCGTTGAAATTCAAGTAAATAAATT
TGGATATAAAAATATAAAAAAAGACGCTATACCTCAGAAAGGGTCATTCA
GTGTTCAACCAAAAGGAAAAGAAGTTGTAAAATTTAATATCACAAACAAA
GAAAGATTAGCTGGAACAGAAAAAATCAATTTAGGGTTAAAAGGTGGTGC
TAACGTGGATAAATTCAATGAAAGTGTGATCAGTGTTTCCAAGGTGAACC
CAGAAAGTTGGCTAAATCGGAGTAAGATTTTGAGATGGGTTCGACGAAAC
AAATTGCAAGCAACGTTAATTGCTATTGGTATAATAATTGATGCTACAAT
GATAACTTTATCAGTGAAGGCCCCCCTCTCCTTGAGACAGACCCGACCCC
AACCTATAAAGATCCTCCAGTTACTGATTTTTGTATCTGCGACACTATTG
GAGGACCAGAGTTGGAGGAAGATTTGAGTGTTTAAAAATAAAAGTTGCGA
AATGGTTCATTATACTGAAGTGAAGCACAAGCATGGCCATAGATGCCTTC
TTCGGCTTGAAGATGAAGATACAAGTTTGGAAGACTTTTGGAAAGGAATT
GGTGAAAAAGGTGCCATATCTGGAAGTGCTCTCCCAGCTGCATACAAAAG
TACATCTACTTATGTCTATCGCAAAATGGGCCAAACGGAATTTGAACTAA
CGATGAAAAATCAAAAACTCCAGTGGCCTTACATAACAAACCCAAGAAAC
AACCCAAAGTATAATGGTGAAAAATGGATGACAGAATCTGTTCAACATAC
CAGAGAGTTTAAACAGCAAACACAATCTTGTCCTAATGTCGTTGAAATTC
AAGTAAATAAATTTGGATATAAAAATATAAAAAAAGACGCTATACCTCAG
AAAGGGTCATTCAGTGTTCAACCAAAAGGAAAAGAAGTTGTAAAATTTAA
TATCACAAACAAAGAAAGATTAGCTGGAACAGAAAAAATCAATTTAGGGT
TAAAAGGTGGTGCTAACGTGGATAAATTCAATGAAAGTGTGATCAGTGTT
TCCAAGGTGAACCCAGAAAGTTGGCTAAATCGGAGTAAGATTTTGAGATG
GGTTCGACGAAACAAATTGCAAGCAACGTTAATTGCTATTGGTATAATAA
TTGATGCTACAATGATAACTTTATCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006127XLOC_006127Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010913-proteinTCONS_00010913-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010913-exon-sc0000118-1575043694:196251..196951TCONS_00010913-exon-sc0000118-1575043694:196251..196951Clytia hemisphaericaexon
TCONS_00010913-exon-sc0000118-1575043694:195824..196027TCONS_00010913-exon-sc0000118-1575043694:195824..196027Clytia hemisphaericaexon
TCONS_00010913-exon-sc0000118-1510915933:196251..196951TCONS_00010913-exon-sc0000118-1510915933:196251..196951Clytia hemisphaericaexon
TCONS_00010913-exon-sc0000118-1510915933:195824..196027TCONS_00010913-exon-sc0000118-1510915933:195824..196027Clytia hemisphaericaexon
TCONS_00010913-exon-sc0000118-1491911889:196251..196951TCONS_00010913-exon-sc0000118-1491911889:196251..196951Clytia hemisphaericaexon
TCONS_00010913-exon-sc0000118-1491911889:195824..196027TCONS_00010913-exon-sc0000118-1491911889:195824..196027Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000118supercontigsc0000118:195824..196951 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.149375	0.431328	0.398396	3.56956e-05	0	0	0	0.000204711	0.188615	0.299159	0.754691	0	0.419253	0.414655	1.67509	1.62766	0.229142	1.02309	0.62208	1.00972	0.0725946	0.169985	0.0476879	0.135305	0	0	0	0	0.261096	0.398519
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010913 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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