TCONS_00010912 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010912
Unique NameTCONS_00010912
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1651

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010912 ID=TCONS_00010912|Name=TCONS_00010912|organism=Clytia hemisphaerica|type=transcript|length=1651bp
ttaagtgtttaaaaataaaagttgcGAAATGGTTCATTATACTGAAGTGA
AGCACAAGCATGGCCATAGATGCCTTCTTCGGCTTGAAGATGAAGATACA
AGTTTGGAAGACTTTTGGAAAGGAATTGGTGAAAAAGGTGCCATATCTGG
AAGTGCTCTCCCAGCTGCATACAAAAGTACATCTACTTATGTCTATCGCA
AAATGGGCCAAACGGAATTTGAACTAacgatgaaaaatcaaaaactccag
tGGCCTTACATAACAAACCCAAGAAACAACCCAAAGTATAATGGTGAAAA
ATGGATGACAGAATCTGTTCAACATACCAGAGAGTTTAAACAGCAAACAC
AATCTTGTCCTAATGTCGTTGAAATTCAAGTAAATAAATTtggatataaa
aatataaaaaaagacgCTATACCTCAGAAAGGGTCATTCAGTGTTCAACC
AAAAGGAAAAGAAGTTGTAAAATTTAATATCACAAACAAAGAAAGATTAG
CTGGaacagaaaaaatcaatttagGGTTAAAAGGTGGTGCTAACGTGGAT
AAATTCAATGAAAGTGTGATCAGTGTTTCCAAGGTGAACCCAGAAAGTTG
GCTAAATCGGAGTAAGATTTTGAGATGGGTTCGACGAAACAAATTGCAAG
CAACGTTAATTGCTATTGGTATAATAATTGATGCTACAATGATAACTTTA
TCAGTGATCAACGATAATGGTTCATTTGGTGAATCAACGCAGATCACACT
TGGTCAAATATCAGGAAGCATGGGAGGAGCTACGATTGGTGCTGCCTTAG
GAAGTATTTTACCAGGATTGGGAAGCTTTCTAGGGGGAGTGCTTGGTGGA
TTTATTGGTTCAATAATCGGTGAGGGTCTTGTTAAACTAGGAAGGTATTT
GTTTTGTGCATCTCCGGTTGCACCAGGTGAAGGCCCCCCTCTCCTTGAGA
CAGACCCGACCCCAACCTATAAAGATCCTCCAGTTACTGATTTTTGTATC
TGCGACACTATTGGAGGACCAGAGTTGGAGGAAGATTTGAATGTGTTTGA
TGCACCTTCACTTGAGCTTTGCTTGGATGGTGCATATGGGGCACCATGTG
GCGATTATGAGACTAATTAATGGAGTCTATTTTTCTATTAGGAGCAGTAA
AATATTCGAGGGGCGCCAAAAATGGGTTTTGAAGGGGCATCAAATTTCTC
TTTTACTAATAATCCAAAAATAATTGGAGAAGTCGAAAGGGcacccaaaa
atcaaaatacgaCTAGCGTATTTTCGTAGCAGAGGAGTGGTGAAAATTTT
TCCCGGTGGCGCTTTAATTGCTTCAATTCTTTAATTTGAAGATGAAATGC
TTTAAAGCCattttacatagttataatgtatgttgattcagcagattgaa
ataaatagaatcttttgtaatgaataaagaaaaatgtggagcaagatttt
tttcttccttttatttacaaatttgaaaggactcttttattaaaattttg
ctgacatcagtttcagacaagtcgggtgtatataacaccaTATAATTCCT
TTAAGGTGGTAGTTAActgagaaatggaaaaagtcatttttttacttttt
ttgtaataacttttgaaatatctaagatatgtcaatgaaactttccacaa
t
Run BLAST on NCBI

transcript from alignment at sc0000118:195303..196953-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010912 ID=TCONS_00010912|Name=TCONS_00010912|organism=Clytia hemisphaerica|type=transcript|length=1651bp|location=Sequence derived from alignment at sc0000118:195303..196953- (Clytia hemisphaerica)
TTAAGTGTTTAAAAATAAAAGTTGCGAAATGGTTCATTATACTGAAGTGA
AGCACAAGCATGGCCATAGATGCCTTCTTCGGCTTGAAGATGAAGATACA
AGTTTGGAAGACTTTTGGAAAGGAATTGGTGAAAAAGGTGCCATATCTGG
AAGTGCTCTCCCAGCTGCATACAAAAGTACATCTACTTATGTCTATCGCA
AAATGGGCCAAACGGAATTTGAACTAACGATGAAAAATCAAAAACTCCAG
TGGCCTTACATAACAAACCCAAGAAACAACCCAAAGTATAATGGTGAAAA
ATGGATGACAGAATCTGTTCAACATACCAGAGAGTTTAAACAGCAAACAC
AATCTTGTCCTAATGTCGTTGAAATTCAAGTAAATAAATTTGGATATAAA
AATATAAAAAAAGACGCTATACCTCAGAAAGGGTCATTCAGTGTTCAACC
AAAAGGAAAAGAAGTTGTAAAATTTAATATCACAAACAAAGAAAGATTAG
CTGGAACAGAAAAAATCAATTTAGGGTTAAAAGGTGGTGCTAACGTGGAT
AAATTCAATGAAAGTGTGATCAGTGTTTCCAAGGTGAACCCAGAAAGTTG
GCTAAATCGGAGTAAGATTTTGAGATGGGTTCGACGAAACAAATTGCAAG
CAACGTTAATTGCTATTGGTATAATAATTGATGCTACAATGATAACTTTA
TCAGTGATCAACGATAATGGTTCATTTGGTGAATCAACGCAGATCACACT
TGGTCAAATATCAGGAAGCATGGGAGGAGCTACGATTGGTGCTGCCTTAG
GAAGTATTTTACCAGGATTGGGAAGCTTTCTAGGGGGAGTGCTTGGTGGA
TTTATTGGTTCAATAATCGGTGAGGGTCTTGTTAAACTAGGAAGGTATTT
GTTTTGTGCATCTCCGGTTGCACCAGGTGAAGGCCCCCCTCTCCTTGAGA
CAGACCCGACCCCAACCTATAAAGATCCTCCAGTTACTGATTTTTGTATC
TGCGACACTATTGGAGGACCAGAGTTGGAGGAAGATTTGAATGTGTTTGA
TGCACCTTCACTTGAGCTTTGCTTGGATGGTGCATATGGGGCACCATGTG
GCGATTATGAGACTAATTAATGGAGTCTATTTTTCTATTAGGAGCAGTAA
AATATTCGAGGGGCGCCAAAAATGGGTTTTGAAGGGGCATCAAATTTCTC
TTTTACTAATAATCCAAAAATAATTGGAGAAGTCGAAAGGGCACCCAAAA
ATCAAAATACGACTAGCGTATTTTCGTAGCAGAGGAGTGGTGAAAATTTT
TCCCGGTGGCGCTTTAATTGCTTCAATTCTTTAATTTGAAGATGAAATGC
TTTAAAGCCATTTTACATAGTTATAATGTATGTTGATTCAGCAGATTGAA
ATAAATAGAATCTTTTGTAATGAATAAAGAAAAATGTGGAGCAAGATTTT
TTTCTTCCTTTTATTTACAAATTTGAAAGGACTCTTTTATTAAAATTTTG
CTGACATCAGTTTCAGACAAGTCGGGTGTATATAACACCATATAATTCCT
TTAAGGTGGTAGTTAACTGAGAAATGGAAAAAGTCATTTTTTTACTTTTT
TTGTAATAACTTTTGAAATATCTAAGATATGTCAATGAAACTTTCCACAA
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006127XLOC_006127Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010912-exon-sc0000118-1575043694:195303..196953TCONS_00010912-exon-sc0000118-1575043694:195303..196953Clytia hemisphaericaexon
TCONS_00010912-exon-sc0000118-1510915933:195303..196953TCONS_00010912-exon-sc0000118-1510915933:195303..196953Clytia hemisphaericaexon
TCONS_00010912-exon-sc0000118-1491911889:195303..196953TCONS_00010912-exon-sc0000118-1491911889:195303..196953Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000118supercontigsc0000118:195303..196953 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.870101	0.711943	0.294185	0.453363	2.14606	1.55212	1.57565	1.04539	0.627522	0.871378	0.588034	0.454608	1.00459	1.20485	2.26138	2.37933	1.37802	0.937969	1.437	0.804746	0.66667	0.983895	1.12122	0.821134	0.132986	0.386324	0.348795	0.297501	1.04017	0.466124
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010912 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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