TCONS_00010911 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010911
Unique NameTCONS_00010911
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length638

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010911 ID=TCONS_00010911|Name=TCONS_00010911|organism=Clytia hemisphaerica|type=transcript|length=638bp
CTTTGGTTCTTCTGGAGAATCAGAAACTACTAATCCAAAAATGACAGACA
TCTTGGATAAATCAATCAAGACAAATAACCATGACttttcaacaaatatt
ttactGGTTGAAAATCTCAAGCAAAATTATGATTCACTCAAGAGAAAGTT
TTTAGAgctTGCAGaagaattgaagatgagaaggaaaaatgatAAAGAAG
CAGAAACAAAAATCAACAACTTGATTAAGGAAAagtttgaattgaaaaaa
attaaagaTGAAGAATTGGTAATGCTTTCAACTTCTTGTGATGAACTAAA
ACAAGAAAATCTCAAATTGAACAAGGAGctTGAAAAGAAGACAAAGCTAC
ATGAAGAAGAAAAGAATACACAAAATATGTCGATCAGCTCAACATCTCAA
GGCATTAGATCTTTAAAGGATGAAATCCTGTCACTGCAGTTGACAAAATA
CAGCTTACAAAAGAAGATCAAGGACCAGGACCATCAGTTGCAATCAGAAT
GTCGTGCCAGGGATGATACCTCCAAACAGattgaaatcttcaaaaaatct
aCAGAGGAGTACAAACAACAATGCGAGGGAGTGTCCAAAAGATTACATCA
TCTGTCCAAACTTGGCCGAAATTAACAAGGTTGCGCCG
Run BLAST on NCBI

transcript from alignment at sc0000118:133054..142109-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010911 ID=TCONS_00010911|Name=TCONS_00010911|organism=Clytia hemisphaerica|type=transcript|length=9056bp|location=Sequence derived from alignment at sc0000118:133054..142109- (Clytia hemisphaerica)
CTTTGGTTCTTCTGGAGAATCAGAAAGTATGACAATATTACTTGACTTAC
TAAGTTTTTTTCTATTTTCATTTATGTTTTTCATGTTGATCTTTTCTTTG
TAACAACACGCAATACTGATAATGTAGCTAGTCAAAGAGAAAAAAAATAT
TTTTGAAAAAAAACAACCTTTTTAATTTTTTAATTTTTGACAACTGTTTG
GAATTGTTTTTATTTTTAAGTCAAAACATCTTCTTTTGAAAAGTCAAAAT
TTCAAGGACCTGTCCTGGATAAAAGTTTTTCAATGGTTTTTTTCTCTCAA
ATGCAAGATGTAAAATTCTTGCATTAAAAAAATTCCTTTTCTAAGATATA
TAACACAGCTGTTACCCTTTTGTATTGAAGTTAATTTGTTATTCCATGGG
CTGTTGCATTCTCCTAAACAATGATATATGATAGCATTATATTGTGGATT
GATAACAATTAAGCCTACCATAACCAAACTGCCAAAAGGTGTTCTGACTG
AATTTTCATGAAAAAGGGGGAGGGAATAGCAAAAGGGAGGGATAGTTTAA
TAATATATGTTGTAGATTATTTTCAAGCACAAGTTATGAAATTTGGTCTT
CCTGAAAGGAAGTTTTCTGTTAGAGTAGTCTGAGTCGAAAAGAAGAAAGA
AGTTTATTATTTCGCTTTCTCTCTAAGATATTTCACCATAAAATATTTGT
TAGCTATTTTTGTCCAAAATCCTTGGGGATAGGTATTTTTAAAGGTTAGG
GGGGATGCCAAGAAGGGGAATCATTTAAAAAGGGGGGGGGTCAGACCCTT
TTCCGCACTATGAACCCAGTTCAATAGTTCTTTAGGAGATGGCATTTTTG
TTTGGTGTCTACTCCAGCTCTTTTTTCTGCATTCCATGGTTACGACCAGC
TTTCTCTGAAGTAAACAAAAGAAAAAACCGATGTAGTAAACGTCAATAAA
AGTGGTAGTGTCATCTCTTACAGTCAGGGAAATCCCTCAATTGCGATATA
CTGCAATTGTGGCAGTTTTCATTTGTGATTAGCCTACAAAGGCTTATAAC
AGCTACATATAGTGCTGGTCGACAAAGATAAACAAACATTGACTGTAAAA
AATTGTACGAGAAGATAGCTTTTCTTTATTAAAAGAATCTGATCTACGGA
AAAAATATTTTGTCTGTGCGTTAAAAAGATATTACAGTATCAATTATGTA
CAAAGATTGCCTGTTTTCTCCTTGAATCTTGAATTCTGTTTCTTGAATAT
ACTGCAATTGCGGTATATGAAAAATTTAAAAGTGACGTTTATATCGCAAT
TGCAGTAAGAAATTACTACCGCAAAAATTTGAGGGATTTCCCTGACTGTC
TTAAAGGACTAACCATAGCTCACTTTCAATAGAAACATTAAACACCAAAA
CCCTTTTGAAATTTTGCTGCTTTGGTTGGTCAGGCATTTGATGGCTATGC
AAGTTTCCCTCCACTGGTGCAAGTTACTCGACTTCACAATACCTTAGAAT
AGAACTAGGACTCCTTTTAACATATCTCATTATTTAGCTACTAATCCAAA
AATGACAGACATCTTGGATAAATCAATCAAGACAAATAACCATGACTTTT
CAACAAATATTTTACTGGTTGAAAATCTCAAGCAAAATTATGATTCACTC
AAGAGAAAGTTTTTAGAGGTATTTATAATTTTTGTTTTGAGATCAGCATT
GAAACCAATATTTATCTAATCCTCAGCCAATGATATGTAGGCCAAATTTA
CAATTCTTTTCAGCTATATAAAATTTGTTTTTTTATTTGATTTTTTTCAT
AGCTTGCAGAAGAATTGAAGATGAGAAGGGTGAGTTTTTTTACTTTCAAA
TATTGCTTTACGTGTGAACCAAAATTCTAAGCTCCTTTTTTATATATATC
AAAGTAGTCCATCTTATCTTTATAATTCAGGTAAATGAATCTCAAAGTTT
TTTCAAAAGATTTCAGTACAAAAAACTTTTTGCAGGATTGAAAATTGAAA
CCATTAGATTTTGCTTTTTCATACGGTGTCTCTTAAAGTAAAAATTTCTT
GAGTTTTATGAATTTTAATGAAGTATTAAATAGAAAAATAAGATAAATTT
AACCTTCATTTATCAAATTTGGTGCCTTTTGTTTTCATTTAAGTGCAAAT
TTTGATCCAACCAATTTTGATAAAAGATCCATCAAAGTTTTTAAGCTTGT
CCTTCCAGGTCCTTCCTCTTTCTAATTAAAAATTTGCACATTAAAATAAA
TTATTTCTGGAACATCTTGTAGGAAAATTATTTGATAATCATTAGGACTT
GATTTCTTACAACTTCTTTTATATTTAGAAAAATGATAAAGAAGCAGAAA
CAAAAATCAACAACTTGATTAAGGAAAAGTTTGAATTGAAAAAAATTAAA
GTAAGAATTTATATTTTGAGTTCACTGAAAACTTAATTTACTAATAGAAT
ATCCTGAGTTTTTGTTTTTTGCTCTGTTTGCTAGCTAAAAGATGAGCTCT
TATTTTTATAGAACAGAACCCAAATTACCAGGTCATTCATCTTATACCTA
GAACAGATTTGAATCTAGTAGTATCTAGGAATATTCTAATCTGTTGGAGT
TGAAAATTGTACGGTTTTCCAGCTAGACAAAACTCAAAAAAGTATAAATC
ATTATAAAACTCTTCAGTGATTGCCTTTCCATTATTAAAACTTTGAGTAT
TTGGATGGGTCACAGGCAAGAAACAACAAAAATTTATTTATTCATTGATA
AATTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNTCTGAAGATGCTCTACCATAGAGTAGG
GAGAAAATTTATCAATGAATAAATAAATTTTTGTTGTTTCTTGCCTGTGA
CCCATCCAAATACTCAAAGTTTTATAAATCATTCTTTGATTTTACAGAAC
AAAATTCAAATAGAACAGATCACCATTTCCAACTGGAACATGAATTTAGA
ACACATTTTTGAAAAATACCCCTTCGTTGTCATTCCTGAATGATTTTGTG
GTCATGTTTTTAATTGAATTTTTTTTTCTTTCAAGGATGAAGAATTGGTA
ATGCTTTCAACTTCTTGTGATGAACTAAAACAAGAAAATCTCAAATTGAA
CAAGGAGGTGAATTTCTTCTTATTAAGTTGCCATAATTTTTTTTTATTAA
ACAATTATTGGACAAAGCCGAATCCAATATGCAAAAATATTGGGCGTCAT
ATTGATGAGACTGTGTCCAAATTGGAATGGTTTATCCTTTCATCGCTAAA
ATATTTCTCGTTCTCAAGAAGCATAATTCCAATTTATAAGCTCATTAATC
TGGTTTCTCATCAAATTCTTCGCGTGACGTCATTCGAATGTTGCTATTAC
CCGCGTCGAATAATAAAATAGAATATAGGCTTTTCCATGCCGTTGAAATG
TCTTTGTGGGAAGCAAATTATAAATTACAGTTTAAAGAAATATTTAAAAA
TTTCATTTCAGCTTGAAAAGAAGACAAAGCTACATGAAGAAGAAAAGGTT
TTCATTATCTCGTTATTATTTTTATGTGGTTGTATGACAAGTCCTGTTGC
TCATAGCAATGTGAATTTACGTTCCCTAATTGGAAATTCATTTTATATCA
AAACAGGGGAAAAAATATTCAGGGGGTTAATCCACGAAGAATTTCCAGGG
GTGTAAAGGAGTGTTTTACATTTTTCCAGGAGGTAAAAAGTTACTACAGG
GGTATAAAACTGATTTAATCCATCCACCCTCACTTAAAGGTATGGAAAGT
TTTTCAAGGGTCTTAGTTTGCAAAATTTGTCATTTTCCAGGGGATATCCA
CGCATATCCTAGAATATTTTTGATTTGAAAAGTTCAACTATTGCAGTATA
GGTATTTAATGGAACAGCCAAATGGTTGTCTTATTTTCATCTTTGTCTAT
ATCTTACTGCATTTTATATCCAGAATACACAAAATATGTCGATCAGCTCA
ACATCTCAAGGCATTAGATCTTTAAAGGATGAAATCCTGTCACTGCAGGT
TAGTCCATCTTCTTCAATATTAACTTTTAACATCTCTGGAAAGTACAAAT
TCGACTAATCAGATTTCTGTTAGTTTTTCTTTGATTGAAAGTGTATTGCT
CATATCAGAATTTGCACAATAATTTATACAATTACTACTACTACTACTCA
TGAAAATATTGAAAAATGACTTATTCGAGAGTGTTTTTCTGATATTTTTA
TAATATTAGTATATAAGATTCCACTGAAGATTGGCGTGGAGGTGCAAACT
CTATATGAAACTCTGAGTTTGAAATTTAAGAGTTTAGTAAACTTTCAATG
TACAATAACATTGTTCTTATTATCGTAATTTTACCTATTCTTTCTCAATC
AGTTGACAAAATACAGCTTACAAAAGAAGATCAAGGACCAGGTACTAAAT
CCAATCTTTCTGACGCACGCTCATTCTGTTCTTCTCATTGTTATTTTTCT
CCCGTTCGAATTTTGAGAAGGGATAAAAATAAGTACCTTGGAAATGCAAA
CCATAGGGAAATGCTGTAAACTGTGGCAAGTTTCATATTGAAGGACTAGA
AGAGCTTTAATTAAGTAAAAAAAATCAATAAAATCGCTTTCTATTTCTTT
TTCCAACTAGAATTGTCCCGCATGTATGCCAATTAGATTTCAAAGAACTT
TTAGTTTAAAATTGATGAGTAAGCAAACAATATCAAGGCTAGAGATAGAG
GAACTGGGCACTACGTTGGCTGATCGTGAGTGTGGAGGGAGGGTTGTCTC
CGACCCACTACCACTAGATCGAAGGATGATGATGAGTAAACAAAGAATAT
CGATTTTTTAGAAAACAAAAGCTTTAACCCTATAAACTGTTCATTTACAT
CAGGACCATCAGTTGCAATCAGAATGTCGTGCCAGGGATGATACCTCCAA
ACAGATTGAAATCTTCAAAAAATCTACAGAGGAGTACAAACAACAATGCG
AGGGAGTGTCCAAAAGATTACATCATCTGTCCAAACTTGGTATGAATGTT
TTATGTTTTTGTTTGTTACCCTTTACATCCTAGAGAATACGAAAATGGCC
TAATATGGGTAAAAATTTGTAGCAACTTGTTCCTCGAGAANCCCCTTTCT
GGGCAAATTTTCTACTTAAAATTGGATATCAAAGATTGCACTCCAAGAAC
AATCTCCACTGGAATTTTTGAGCTGGGAACATGTCTTGATGATTACTGAT
TACATGTCTTGTAAATGCGTTCCTTTACCTTGAAGAAAATCTTATAAAAA
TTTATCACTTCCAATTTTCTCGACTTGGGCAGTTCTTATTGACTCTATCT
TTGTACTTACTTGTTATACAAGACTTTAACGTCTGATTTGTCGATAAGAT
AAATAAAATTTTCAGAAAGTTGCATATGATCAAATATCATGCAACACATG
TGGTTATTCGTTATTCTTTTACAATAACATCCTTCGGATATTAGTGTTCT
TAACTTGTTCTTAATATTTTGCCATCGAAGTCTTACCTTCTTAATAATTT
GTTCTTATAAAAACGTGTATTCGGGCAGTTCTTATGGAATCTTATGTGAT
ACATTTTCTTAGATTTTAACGTCTGAAATAAAGAAAATTTTCAGAAAGTT
GCGTATAATCAAATATCATGCAGGCGGTTTTTCGTAAAATGAAATATATA
TAGATTGATTTTTTTGGAAATTTTATCTTTTCACATGTACGTGAAGTCAG
ACGTAAAGTTGTTTTCACCTGGTCATAAACTTTTAACCCTATGCAGGTGG
AGGTGACTTTTTTCAGGTGGGGTTAGAGAGTTATTATTGACTAGTTTCTT
ATTTTGTCTCAAAAACTTTCTTTCCTCAACCTAGTTTATAAAATGGTACA
AAGACAATAAAGAATTTGTTAATTTTTTTTCCAGCCCCCCNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAATTTTGATTTCATCGTG
TTTAAGCCACCTTCCCAACATCTCAAAGGACTTTAAATGCGTTCAGCAAA
CAGCTAAACCGGCGTGCGACGCCGGGTACTACCGGCTAGTTTTACTTTAA
ATAACCAGGTTTTTAGTCTAAAACTACCTTATTTTGGGGCCATTAAGAGG
TATAATTTCCATCCCCCATATATTAACTTTTGGAAATTTTTCCAACTCCT
CCCTCCCCGTTTATTCCGACCCCCTAGACATCCAATCTCAAAACCCTACC
TGGTAGCCCATGTGTGGAAGCTGGACTACGTTTTATGTCAAGCCTTAGAC
TGCTGGCATCCATTAACGGCTTTGCGCTCTTCTAACTGTGGTTTTGTGGA
GGTCTGCGGTTTAGACTAAGCTTAGTTGAGCCTGTGTTACAAAAAAATGT
CATTGAGTTTTAATTTAAGACTGGCTCTGAGCCGAAGAGCTGTTGTTTTG
TTAAGTTTGTATAGAATTTAAGAAGGGTTTTGGCGTCACCTTTACTAGGA
AGAATAGTTTTGATAAATTACGTCAATGAAGCGGGCGCGAAGTTTAAAGG
CTATTTTGGATTGGAAAACCCGCGCTTTATAGGCCGAAATTAACAAGGTT
GCGCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006126XLOC_006126Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010911-exon-sc0000118-1575043694:142084..142109TCONS_00010911-exon-sc0000118-1575043694:142084..142109Clytia hemisphaericaexon
TCONS_00010911-exon-sc0000118-1575043694:140442..140572TCONS_00010911-exon-sc0000118-1575043694:140442..140572Clytia hemisphaericaexon
TCONS_00010911-exon-sc0000118-1575043694:140281..140307TCONS_00010911-exon-sc0000118-1575043694:140281..140307Clytia hemisphaericaexon
TCONS_00010911-exon-sc0000118-1575043694:139710..139781TCONS_00010911-exon-sc0000118-1575043694:139710..139781Clytia hemisphaericaexon
TCONS_00010911-exon-sc0000118-1575043694:137703..137774TCONS_00010911-exon-sc0000118-1575043694:137703..137774Clytia hemisphaericaexon
TCONS_00010911-exon-sc0000118-1575043694:137313..137348TCONS_00010911-exon-sc0000118-1575043694:137313..137348Clytia hemisphaericaexon
TCONS_00010911-exon-sc0000118-1575043694:136812..136886TCONS_00010911-exon-sc0000118-1575043694:136812..136886Clytia hemisphaericaexon
TCONS_00010911-exon-sc0000118-1575043694:136419..136457TCONS_00010911-exon-sc0000118-1575043694:136419..136457Clytia hemisphaericaexon
TCONS_00010911-exon-sc0000118-1575043694:135821..135956TCONS_00010911-exon-sc0000118-1575043694:135821..135956Clytia hemisphaericaexon
TCONS_00010911-exon-sc0000118-1575043694:133054..133077TCONS_00010911-exon-sc0000118-1575043694:133054..133077Clytia hemisphaericaexon
TCONS_00010911-exon-sc0000118-1510915933:142084..142109TCONS_00010911-exon-sc0000118-1510915933:142084..142109Clytia hemisphaericaexon
TCONS_00010911-exon-sc0000118-1510915933:140442..140572TCONS_00010911-exon-sc0000118-1510915933:140442..140572Clytia hemisphaericaexon
TCONS_00010911-exon-sc0000118-1510915933:140281..140307TCONS_00010911-exon-sc0000118-1510915933:140281..140307Clytia hemisphaericaexon
TCONS_00010911-exon-sc0000118-1510915933:139710..139781TCONS_00010911-exon-sc0000118-1510915933:139710..139781Clytia hemisphaericaexon
TCONS_00010911-exon-sc0000118-1510915933:137703..137774TCONS_00010911-exon-sc0000118-1510915933:137703..137774Clytia hemisphaericaexon
TCONS_00010911-exon-sc0000118-1510915933:137313..137348TCONS_00010911-exon-sc0000118-1510915933:137313..137348Clytia hemisphaericaexon
TCONS_00010911-exon-sc0000118-1510915933:136812..136886TCONS_00010911-exon-sc0000118-1510915933:136812..136886Clytia hemisphaericaexon
TCONS_00010911-exon-sc0000118-1510915933:136419..136457TCONS_00010911-exon-sc0000118-1510915933:136419..136457Clytia hemisphaericaexon
TCONS_00010911-exon-sc0000118-1510915933:135821..135956TCONS_00010911-exon-sc0000118-1510915933:135821..135956Clytia hemisphaericaexon
TCONS_00010911-exon-sc0000118-1510915933:133054..133077TCONS_00010911-exon-sc0000118-1510915933:133054..133077Clytia hemisphaericaexon
TCONS_00010911-exon-sc0000118-1491911889:142084..142109TCONS_00010911-exon-sc0000118-1491911889:142084..142109Clytia hemisphaericaexon
TCONS_00010911-exon-sc0000118-1491911889:140442..140572TCONS_00010911-exon-sc0000118-1491911889:140442..140572Clytia hemisphaericaexon
TCONS_00010911-exon-sc0000118-1491911889:140281..140307TCONS_00010911-exon-sc0000118-1491911889:140281..140307Clytia hemisphaericaexon
TCONS_00010911-exon-sc0000118-1491911889:139710..139781TCONS_00010911-exon-sc0000118-1491911889:139710..139781Clytia hemisphaericaexon
TCONS_00010911-exon-sc0000118-1491911889:137703..137774TCONS_00010911-exon-sc0000118-1491911889:137703..137774Clytia hemisphaericaexon
TCONS_00010911-exon-sc0000118-1491911889:137313..137348TCONS_00010911-exon-sc0000118-1491911889:137313..137348Clytia hemisphaericaexon
TCONS_00010911-exon-sc0000118-1491911889:136812..136886TCONS_00010911-exon-sc0000118-1491911889:136812..136886Clytia hemisphaericaexon
TCONS_00010911-exon-sc0000118-1491911889:136419..136457TCONS_00010911-exon-sc0000118-1491911889:136419..136457Clytia hemisphaericaexon
TCONS_00010911-exon-sc0000118-1491911889:135821..135956TCONS_00010911-exon-sc0000118-1491911889:135821..135956Clytia hemisphaericaexon
TCONS_00010911-exon-sc0000118-1491911889:133054..133077TCONS_00010911-exon-sc0000118-1491911889:133054..133077Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000118supercontigsc0000118:133054..142109 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.79773	1.23373	0.00377507	0.325482	3.53747	1.20203	0.387444	1.21875	0	0.546158	1.78634	0.388146	0.909292	0	1.78996	0.530374	0.76754	0	0	0	0.284552	1.16746	0.601912	0.382689	6.48201	10.9326	0	0.177354	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010911 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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