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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010907 ID=TCONS_00010907|Name=TCONS_00010907|organism=Clytia hemisphaerica|type=transcript|length=2236bp
CGTCATTGTATTCTTCTAATCTAGTTATCAAGACAGAGAGTATGCATCAG
AACCTGCTGGACAAAAGTAATCATCACCAATGCATTGTAGATAGTTATGA
AAAAAGTATGGTTCAAATACAGGAAGAATTAACTCAGACCAAAGCTAAAC
TTATTGAGCTTGAGAAAGAACGAGAAAAATCGTCCAATTTGTCTCAGTTA
ACCAGCAGTTACTCAGGAGAAACAGCAGAACAGAAATGGAAATCATTGAA
TGGTCAGCTAAAGAGCGAGATCCAGAATGCTTTGCAGCAAAAACAGttcT
ACATGAACTCATTGGCCGAGACGAATCGAATGTTAGCGGAGATCCAATCA
AAATTTGACACGTCACACACAGAGAACCAATCAATGAACAGTCTTTTGTT
TGATTTAAAGAAAGAACAAAAGGAGACGTTCGAAAAGTTGAATTCtttag
aagaagaaaaagaaaagctgTTGTCGGAAATCACGCTCTCCGACACAGAT
GCTCAGAAAAAGATTCTTGCCTTGGAGACGGTGGAAACAGAGAATCAAAT
TCTCTCTAAGAAGGTTACCACCCTAACAGACACAAACGAAAAGTCTAGCA
AGAAAATCGAACAACTCGAGAAACGAATCGAAGATCAATCGAGTACAAAA
GAATCCATCGATTTTGAAGCACAGTTTCCGAGTGGTGGAATTTCATCAAT
ATCTTTGGTAGACAAGTCAGTGATTTCTTCTACGCAGTCTGGGGAGGAGT
TTACACAAACCGATGTCATAGTAACAGATGAAAAGCCTCCTGTTATCAGT
ATTATGGAGATAAAAGATCAGAAAGGTATTCGTCCATCATACACCAGGTC
TCATATTACAAAGATGACACCAAGCCCTAAAGATGTGGTGAAAGATGAGC
CTGATCTAGTGGAGATAAAAGACAAAACTGGAAGAGGGATGATGGAGGTA
AAAGAGAACCGTAAGCGTAGTATTAGGGAGATGGAAAAGCAATCAAATAT
TGGAAGTGACGTGATGATGGAAGATGTTTCGAAAGAGACTGTCGGAGGAG
AGAGGAGAACGCCTTTTCGTGAATCTGTAATTTGAGAGACAAAAACCTGC
TACTGATTGAAAACCAAAGAACATTTCAACAGGGCTATTTATTTATGGGC
TAGTTAAACAAAAGCAAAGTGATACTCAGTCCGGGGTGAAATCGGGGGCC
GAAGGGAATTCTAATTTTGttcaatataacaatagcgttcagtttgaggt
cgttgttgttattttctgcccgcacagtttgattattagcccgagagtgt
catttgggcccgacgcgaagcggagggcgcaaatggcactagagggctaa
taatcaaactgcaagggcagaattaatgacaacaacgaacgaaagcttaa
cgctattactattattatccatatcgaacattcaaacaatgttttttcta
gcgtcagctaaatcttttcgcttcaatgcaatgactttaacaagttttga
gtacccttgcgagcgggccgTAAAcaaccaaaaagtgtttttttctgacc
tcggtttagtctcaccgcttcaatgcaacgacttcaataaagttccgagc
gggccgcaaatgacgttatcgccctataaccagggcggttaatgatattt
cagccctctgaagcacgacgccttagttttctcagcgcgggtatgactat
ttgagtcaaagaacctttcaataccgcccgcctttcgaacctttaatggc
ttacttaatgaccgctatatggataataattcTACTTTACCTTCGATTTG
GGTTGATATTAATTTGTGTGGGCGCCGCCCGAAAGACTTCAAAAAGGGCG
ATTTTGAAGAGCGCTTTTGCAGCTTTTGGAGCTTTTTCGAAGAGCGAAAA
GGGCGCTTCAAAAGGACGCCAAAAAAGCTACACTGATCATTAATTTTGAC
ATCGCCATTTGTTTTTACATCCTACAAATAGACTGAATTACGGGTTGCTT
TAGGTTGATAATTTTATATCGGTATCTTTAAGATCGTTTTAATGCCTGAT
TTCTGTTCACGCGTGCAATTGACGTCAGAGTGAGTACTGGAGAAGTTGAA
TTGTTCTAATGTTGTGTAATACACgtatttttatataagaacagctaaat
tttttgaagtcttcgggAGTGCTTAACTTTTTcggctttaagcctaaaaa
tgttcttaaaatgctcgtatttctccattttgtgac Run BLAST on NCBI transcript from alignment at sc0000118:113890..118537- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010907 ID=TCONS_00010907|Name=TCONS_00010907|organism=Clytia hemisphaerica|type=transcript|length=4648bp|location=Sequence derived from alignment at sc0000118:113890..118537- (Clytia hemisphaerica)
CGTCATTGTATTCTTCTAATCTAGTTATCAAGACAGAGAGTATGCATCAG
AACCTGCTGGACAAAAGTAATCATCACCAATGCATTGTAGATAGTTATGA
AAAAAGTATGGTTCAAATACAGGAAGAATTAACTCAGACCAAAGCTAAAC
TTATTGAGCTTGAGAAAGAACGAGAAAAATCGTCCAATTTGTCTCAGTTA
ACCAGCAGTTACTCAGGAGAAACAGCAGAACAGAAATGGGTAAGCGAATC
AGATATTTTCAAGATAAATTCAATTAGATATAGTCGAAAGCTTAGAGGCG
AACCTTTCCCAGCTAGGAAAACAAAAATCTAGTGTCTCCTTGTTTATTTG
GGTCTAGTACATTTTTGAAATCTAATGAAATGATTATACACCTTATCGGG
GAAAAAAATTTCGGGGGAAAGTAACGAAGATGCTTCTAGGTGACGAAATT
TTTCCCCGACGAAAAAAAAACCCGACCAAATAAAACTCCGAAATTTTTTC
CCCGATAAGGTATTACGAAGAATGCGAATCCGATTCTAGCCTTTAGCTGA
TATTTCGATTTTCAAGGGTCATCGAATTAGAGAAAGATTCGAATAACAGG
GAGTATTCAAAGCCATTTTCCAGTTGACGGGATAGACGTTTTAGTTCGAA
TTACAGAAAGATTCAAATTGCGAAGGTTCGAATTAGAGAGAGCGTTGACT
TTAAGACCATGTTCACACGTTACTGTTCCGTTACGCTCCGGTATGATTTT
CGTTACGGATCGAGTGTGTTCATATTGGTTTCGGAACGTTTTGGAGCAAC
AAAACAGTGTAGTTCCGTCCCGATGAAAAAAGTTAAGCGAAACCGTTTCG
ATCTGTTTTGCTTTGTAACGTCTTCTTTTTTGACATTTCGAATTTTGACG
TTCACACTTGTTTTGGAACCGTTTCGTTTCGTTTTGTTTCGGAACGGAAC
CGTAACGTCTGAACATGGTTTAACTCATTTCGAAATTTATTCTTTTACCT
TCTTGTCTTTAGAAATCATTGAATGGTCAGCTAAAGAGCGAGATCCAGAA
TGCTTTGCAGCAAAAACAGGTAACTTTTGTTAAATAATAATGATGTCAGA
TTATGAACAGTATTATGAGCAGTATTTCTACAGTAGAAAATTCGTCGGTA
AAAAGTGACAAAAAATTTTTTCGACAATTATTTTGCCGGGGATTATCCTA
GGTCGAGGGTTTTTTTTTTGACGATTGGCAAATAATTCTTAGATAATAAG
TGACGAATTTTTTGGAATCATGAATTTTTTTTTCCGACAAAATTTTGTAG
TCGACAATTTTTTTACCGATAAGGTTCTGTACCTGAAAATGGTTGCTCTG
AAATGGGAATTTAGTTTAAAGTCAGGTTTTTTCCATAAAATTATCGATTG
AGACTTCGGTGGTCACCTTATTTAAACGACGGTATTTTTATGTTTCGACG
CAAATTTACAATGGATTTTTTTGCATAGATATTTCTTAGTTTCCTACAGT
AACAAAGATCAAAATCTCTATTATCGAATCGAAGATGCTTCAAAACGCGA
ACTTATGAGAGGCTTCCTAATGGACACAAATCCAGCCATTCACCCTGTTT
GTTTGTTTTTTTCAAAATTCATGGACTCTCGCATCGAAAAAGCTCATTCA
CGTATATTCACGGGAACCGCTGGGAGTTCTCACGATTCTATGACCAAAAG
ATTTCATATTTTGTGTTCTTTTAATTTCGGGGTTATCTAAAAAAAAATTT
ATTTTTTGTTTTCAGTTCTACATGAACTCATTGGCCGAGACGAATCGAAT
GTTAGCGGAGATCCAATCAAAATTTGACACGTCACACACAGAGAACCAAT
CAATGAACAGTCTTTTGTTTGATTTAAAGAAAGAACAAAAGGAGACGTTC
GAAAAGTTGAATTCTTTAGAAGAAGAAAAAGAAAAGCTGTTGTCGGAAAT
CACGCTCTCCGACACAGATGCTCAGAAAAAGGTACTGGATATGTTTTCAA
GTTTTGACAATACTTTCGGCTTCCGGTAGTATGGCCTACTAAAGGCGTAC
AAATTTCGTTAAATCTGACGCACAAGTTTTCGCAACTGAAGGGGAATAAA
TTTAGAAAATCGCGAAAGTTTATGTTTGCAAAAGTTGTAATCAAAAGCCC
AAGATATTCGTCCAAGTTAAGGCAAGAACATTTTAATATCTAACGAGTTT
AAAAATCTAGCTTTCACAAATAGTCTTCCAGTGGCGAATAATTCGAATGA
ATTAGATTTCCTGTTTTAAGGTTTGGGGACACGAGAAGTTTTTTTTGCGT
TGGTGCAATGCATCATGCTCCATCCCACCAACACAAGAAAAAAAGTGCGT
GTCCCATGGTTTCTTTTATTGTTTCATGGGACAAAAAGTGAGGGAAAAAA
TCCCTGGGACAAAAGTGAGATTTCACTTTTTATTGGTAGAAAGAAAAATG
GGGTGGAGGACACGAGAAAGCGTTTCAGTTTGGTGGGATGGAGCATGCAT
TGCACCAACGTGAAAAAAACTTCTCGTGTCCCCAAGCCTTTAGTAGTTTG
GATCAGTGAGATTTTTGATACAGTGTAGTTTCCATAACTAGGGGGACAAG
AGATTTTACAAACTCTTATTTGATTTGTTTGGTCGTTAGTTAACCTGTAA
TACAATAAATTTGGGACATGGTGGAGTTTTTACATGGTCTTATTTGATTT
GGTTGGTCGTTAACATGTCATAAAAACAACTTTGTTACGTTTTGCAAAGA
ACGCGTCGTCTCTATTACATAAATTAGTGACGTATTTCATAAAAACTTCG
GCTCATCCTATCACTAGAACACACCCGGGGAACACAGATTTTTCCGAGTT
TGAGGAGACATTCGAGTTACAGAGGTTCGAGTTACAGAGACTCAACTGTA
TAATCTCTTTTACGCCATTGACAGATTCTTGCCTTGGAGACGGTGGAAAC
AGAGAATCAAATTCTCTCTAAGAAGGTTACCACCCTAACAGACACAAACG
AAAAGTCTAGCAAGAAAATCGAACAACTCGAGAAACGAATCGAAGATCAA
TCGAGTACAAAAGAATCCATCGATTTTGAAGCACAGTTTCCGAGTGGTGG
AATTTCATCAATATCTTTGGTAGACAAGTCAGTGATTTCTTCTACGCAGT
CTGGGGAGGAGTTTACACAAACCGATGTCATAGTAACAGATGAAAAGCCT
CCTGTTATCAGTATTATGGAGATAAAAGATCAGAAAGGTATTCGTCCATC
ATACACCAGGTCTCATATTACAAAGATGACACCAAGCCCTAAAGATGTGG
TGAAAGATGAGCCTGATCTAGTGGAGATAAAAGACAAAACTGGAAGAGGG
ATGATGGAGGTAAAAGAGAACCGTAAGCGTAGTATTAGGGAGATGGAAAA
GCAATCAAATATTGGAAGTGACGTGATGATGGAAGATGTTTCGAAAGAGA
CTGTCGGAGGAGAGAGGAGAACGCCTTTTCGTGAATCTGTAATTTGAGAG
ACAAAAACCTGCTACTGATTGAAAACCAAAGAACATTTCAACAGGGCTAT
TTATTTATGGGCTAGTTAAACAAAAGCAAAGTGATACTCAGTCCGGGGTG
AAATCGGGGGCCGAAGGGAATTCTAATTTTGTTCAATATAACAATAGCGT
TCAGTTTGAGGTCGTTGTTGTTATTTTCTGCCCGCACAGTTTGATTATTA
GCCCGAGAGTGTCATTTGGGCCCGACGCGAAGCGGAGGGCGCAAATGGCA
CTAGAGGGCTAATAATCAAACTGCAAGGGCAGAATTAATGACAACAACGA
ACGAAAGCTTAACGCTATTACTATTATTATCCATATCGAACATTCAAACA
ATGTTTTTTCTAGCGTCAGCTAAATCTTTTCGCTTCAATGCAATGACTTT
AACAAGTTTTGAGTACCCTTGCGAGCGGGCCGTAAACAACCAAAAAGTGT
TTTTTTCTGACCTCGGTTTAGTCTCACCGCTTCAATGCAACGACTTCAAT
AAAGTTCCGAGCGGGCCGCAAATGACGTTATCGCCCTATAACCAGGGCGG
TTAATGATATTTCAGCCCTCTGAAGCACGACGCCTTAGTTTTCTCAGCGC
GGGTATGACTATTTGAGTCAAAGAACCTTTCAATACCGCCCGCCTTTCGA
ACCTTTAATGGCTTACTTAATGACCGCTATATGGATAATAATTCTACTTT
ACCTTCGATTTGGGTTGATATTAATTTGTGTGGGCGCCGCCCGAAAGACT
TCAAAAAGGGCGATTTTGAAGAGCGCTTTTGCAGCTTTTGGAGCTTTTTC
GAAGAGCGAAAAGGGCGCTTCAAAAGGACGCCAAAAAAGCTACACTGATC
ATTAATTTTGACATCGCCATTTGTTTTTACATCCTACAAATAGACTGAAT
TACGGGTTGCTTTAGGTTGATAATTTTATATCGGTATCTTTAAGATCGTT
TTAATGCCTGATTTCTGTTCACGCGTGCAATTGACGTCAGAGTGAGTACT
GGAGAAGTTGAATTGTTCTAATGTTGTGTAATACACGTATTTTTATATAA
GAACAGCTAAATTTTTTGAAGTCTTCGGGAGTGCTTAACTTTTTCGGCTT
TAAGCCTAAAAATGTTCTTAAAATGCTCGTATTTCTCCATTTTGTGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010907-exon-sc0000118-1575043694:118299..118537 | TCONS_00010907-exon-sc0000118-1575043694:118299..118537 | Clytia hemisphaerica | exon |
| TCONS_00010907-exon-sc0000118-1575043694:117469..117525 | TCONS_00010907-exon-sc0000118-1575043694:117469..117525 | Clytia hemisphaerica | exon |
| TCONS_00010907-exon-sc0000118-1575043694:116557..116772 | TCONS_00010907-exon-sc0000118-1575043694:116557..116772 | Clytia hemisphaerica | exon |
| TCONS_00010907-exon-sc0000118-1575043694:113890..115613 | TCONS_00010907-exon-sc0000118-1575043694:113890..115613 | Clytia hemisphaerica | exon |
| TCONS_00010907-exon-sc0000118-1510915933:118299..118537 | TCONS_00010907-exon-sc0000118-1510915933:118299..118537 | Clytia hemisphaerica | exon |
| TCONS_00010907-exon-sc0000118-1510915933:117469..117525 | TCONS_00010907-exon-sc0000118-1510915933:117469..117525 | Clytia hemisphaerica | exon |
| TCONS_00010907-exon-sc0000118-1510915933:116557..116772 | TCONS_00010907-exon-sc0000118-1510915933:116557..116772 | Clytia hemisphaerica | exon |
| TCONS_00010907-exon-sc0000118-1510915933:113890..115613 | TCONS_00010907-exon-sc0000118-1510915933:113890..115613 | Clytia hemisphaerica | exon |
| TCONS_00010907-exon-sc0000118-1491911889:118299..118537 | TCONS_00010907-exon-sc0000118-1491911889:118299..118537 | Clytia hemisphaerica | exon |
| TCONS_00010907-exon-sc0000118-1491911889:117469..117525 | TCONS_00010907-exon-sc0000118-1491911889:117469..117525 | Clytia hemisphaerica | exon |
| TCONS_00010907-exon-sc0000118-1491911889:116557..116772 | TCONS_00010907-exon-sc0000118-1491911889:116557..116772 | Clytia hemisphaerica | exon |
| TCONS_00010907-exon-sc0000118-1491911889:113890..115613 | TCONS_00010907-exon-sc0000118-1491911889:113890..115613 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000118 | supercontig | sc0000118:113890..118537 - |
Blast
The following BLAST results are available for this feature:
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