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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010898 ID=TCONS_00010898|Name=TCONS_00010898|organism=Clytia hemisphaerica|type=transcript|length=1985bp
ttcagaaattaacgcaaaaactaaaaaaacaaacagaataaTCATGGATT
TCAAACTCCTTTGCATGGCATTACTTGTTAGAATGTTATTAATATTTTAT
GGGACGCACCACGATCGGTATTTTGAAGTCAAATACACCGACATTGATTA
CACAGTCTTCACAGAAGCAGCAAATCATACCTTGATGGGCGGTACACCCT
ACCAAACACCCACCTACAAATACACGCCCTTATTGGCACTCATACTTCTC
CCGAACATTAGTTTACACTTACTATTCGGTAAAATACTCTTTTGTATTGT
TGATATCGTGGTTGCGATGGTGATGAGTGAAGTCATGAAACTTGGTTCCG
TGAAAGGAGACTTTGCAACGAAAGTAGACGAAGTGATATGTTTTTGTTGG
CTTTTTAACCCGTTCACAATTACCATTTCTTCGCGAGGAAACGCAGAAGC
TATTCAAATTCTTTTGGTGGTCCTGACTCTGTATTTCATGATGAGTGATC
ACACCTTACTCTCAGGTTTCTTCTTTGGGTTATCTGTTCACTTCAAGATC
TATCCTTTCATCTATGGCGCGCCATTCCTCTTTTATTTAACCAAAAAATC
GTTAGACGAAACAAGACAACGGAACGTCACTATTTTACAATTCACAATCA
AGATGGTAACTTCACTGCAAAATATCTTGTTTGGTTTGGTCTCCCTGGCA
ACTTTCTTTGGAATGGGAGCATTCATGTTTTCATTATATGGTTTTGACTT
TATCGAGAACACTTATCTTTTCCATCTCTCGCGTATCGATATGCAACACA
ACTTCTCCCCGTACTTCTACGTCCTAAAGACCACTCAAGGATTGTGGGtc
ggtgacgtcatcaatcgCTTAGCCTTTATACCGCAGATGGGGACAGTGTT
ATGGATAGGGGCTAAATTTTATGACCGATTACCGCTGGCATTGTTCTTGC
AGACTTTTGCATTTGTCACGTTTAATAAAGTTTGTACATCACAGtaTTTC
ATCTGGTACATTGGTCTTCTACCAATGGCTTATCCTTACCTGCACATTGT
TGATCCAAAGAAGAACATCAAGCGAACTGCTCGTACGAATGTTGTGCAAC
TTGCAATATGGCTTATGCCACAGGCTGTTTGGTTAGGGTTGGCTTATTTG
TACGAATTTCGAAAGTTGGATGTTTTAGTGTATGTCTGGCTGGCATCTCT
TGTATTCCTGGGAGCGAATATATATTTGTTGAAAAGCATGATGGGAAGTT
TTGCAATCATCAAGGGTGATGAAGAAATGGAGAAAGAAGATTGAAATACT
TTTATTCATACTTATATACTTGTACAGAGATTTGAAGGGTCAGTAACATA
AATATGGACGAAAATGGTTAAACTTTTATACTGTTATACTTTTAAGTGGA
TTCGGCAAAAAATGCCAAATCAATGATACGTCAAATTTAACAAAGTCTTT
TTAAGATAGAATTTTATggatttaatgtttttttgtgtAAGAAATACCAC
GTATCTATTTAGTTTATCAGAGGTCTACAATcctggccataatatttgag
acaaaagggaaattcccacgaaatcttataaccacaagtattttggaaag
cgctctaaattaggttaaacgaatagagttttaactctgagttaggacct
tagaatctgaggatccaaaagtcccagaatggtccaacagggctcagaat
atagcctggtagtcaattaaccccacccaaatcaaaatactcgaataaat
ttatcaattagcccaaaaacgactttctcgcccgaattccaaattttgaa
aaacgaggaaataagctaaattctcaatatattttggccagGATTGTACA
CTGTTCTTACTGTATCTgctaaattttagaaaatcgaGCATACGTTAAAA
CTCTCACTTTAGCCAACTGTCGCTAAATGAAATTCATGCTAAAGGTAACC
AAAGTTTTTCGATCGCAAAAGATGTTAAAAGACTG Run BLAST on NCBI protein sequence of TCONS_00010898-protein >TCONS_00010898-protein ID=TCONS_00010898-protein|Name=TCONS_00010898-protein|organism=Clytia hemisphaerica|type=polypeptide|length=430bp
SEINAKTKKTNRIIMDFKLLCMALLVRMLLIFYGTHHDRYFEVKYTDIDY
TVFTEAANHTLMGGTPYQTPTYKYTPLLALILLPNISLHLLFGKILFCIV
DIVVAMVMSEVMKLGSVKGDFATKVDEVICFCWLFNPFTITISSRGNAEA
IQILLVVLTLYFMMSDHTLLSGFFFGLSVHFKIYPFIYGAPFLFYLTKKS
LDETRQRNVTILQFTIKMVTSLQNILFGLVSLATFFGMGAFMFSLYGFDF
IENTYLFHLSRIDMQHNFSPYFYVLKTTQGLWVGDVINRLAFIPQMGTVL
WIGAKFYDRLPLALFLQTFAFVTFNKVCTSQYFIWYIGLLPMAYPYLHIV
DPKKNIKRTARTNVVQLAIWLMPQAVWLGLAYLYEFRKLDVLVYVWLASL
VFLGANIYLLKSMMGSFAIIKGDEEMEKED Run BLAST on NCBI transcript from alignment at sc0000118:433743..443741+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010898 ID=TCONS_00010898|Name=TCONS_00010898|organism=Clytia hemisphaerica|type=transcript|length=9999bp|location=Sequence derived from alignment at sc0000118:433743..443741+ (Clytia hemisphaerica)
ttcagaaattaacgcaaaaactaaaaaaacaaacagaataaTCATGGATT
TCAAACTCCTTTGCATGGCATTACTTGTTAGAATGTTATTAATATTTTAT
GGGACGCACCACGATCGGTATTTTGAAGTCAAATACACCGACATTGATTA
CACAGTCTTCACAGAAGCAGCAAATCATACCTTGATGGGCGGTACACCCT
ACCAAACACCCACCTACAAATACACGCCCTTATTGGCACTCATACTTCTC
CCGAACATTAGTTTACACTTACTATTCGGTAAAATACTCTTTTGTATTGT
TGATATCGTGGTTGCGATGGTGATGAGTGAAGTCATGAAACTTGGTTCCG
TGAAAGGAGACTTTGCAACGAAAGTAGACGAAGTGATATGTTTTTGTTGG
CTTTTTAACCCGTTCACAATTACCATTTCTTCGCGAGGAAACGCAGAAGC
TATTCAAATTCTTTTGGTGGTCCTGACTCTGTATTTCATGATGAGTGATC
ACACCTTACTCTCAGGTATTAATTAATTTTATCTGGCACCCAAATGGTGA
AGTTTTCATCCGACAAGtaaaagctctgaaggtcgggaaaactttcaaca
tctggaaggtttacattacggaattttgtaAGGCCGTGTCAAGGACTTTG
CaacgggaggtctggtaaccaagccctcgttttcggggattggcggttCT
AAGTGAAGTATTTTCTGGCTTACGCACAATGGTTGTTGAACCTGATATgc
gatgcggcacatcaaaggccgactgtCATTCCTCTCCGATTGGAAATTTG
CCCGCTCCTTTACAAccttagcgtgggcggccgtcaatccgccatcggaa
tatcagatattAAGTATTAATTGGGATATTCAAGAAATAGTCTTAACCCC
ACTGTGTTGAGGAGGTgagacgtccagggtggtcttaaaaataaaagtcc
agggtggtctgttattttttcatgtaaAAATCTGGGATGGTCAATAAAAT
GGggtcaaagaaaaaaatccaacagGGTCCTGAatgattgaaaaataaat
ccagGGGTCACCTTtccctcctcaacatagggggcaCAAATTTTGTTATG
GAATAACCCATTATGACGTGTCCTAAACTTGTTACATTGGCGTTGTTCAT
ATGACGTCAGATATCTGAAGTCATTGTATTGATGCGCTCTTAGAGCCAGG
TTGACAGTATTTGATTAAAGTGGATTAAATTTTACGTGAGTTAAACGGCC
TAACTTTCACGAATTTTGCCCTTTTCGCTAAATTATTCAGTCTTCTTAGT
CTGGAGGCGGCTTTTGTTGAGCCTTGCAAGTAGTATACATGggtttttat
attattttcttaTCTTGACTCCAAGAACAGTTTTTGAAAAGCTTTAGAAA
GTTTTCCATGAAGCATTGAATGAGGTAAAGGTCATTTTGGCCTAGAGTCC
CTTAGTAAGTCAATTTTTGAAGTCCCCTATTGAACAAAACTCGTTGCTCC
ATCTAATAGAGCTTAAAGAATAGTTCTCCAGGAAGGGGTCATCTGGGTTC
ATTTATATAATTTGGTTTTCCCTAATAATGGacgaaactttttcaaaaaa
ccatCAAACTCGCTCAaatatgctgaatcagcaaaatttgaaatgcaaat
atctcaagatctaGCAATGGTACCTCAACAAACTATACCTGTATTCGATA
atactcttcgagacgcatccgttgaaagtggttttgagtgctgaaattaa
tttttaaagtgttgacgtcagcattaaaaatgactttttttcagCCATTA
TGGCTATTTTTTCAGGGTCTGattgaccaaattttacaaatgaccccatt
ttggacatCTACTCTTCCAGCTCTATCAGATGGAACCATCAAAattagct
gtttaaaaacttttaaaattgaNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTCACtgctttttgcttagaaaacc
cCCTTTCACTCTTTGgtccataactttttttccccatgacaaaaaaattg
actctacccctcatttgaaagctgataaaagtatctttccaacggtatat
acccttttataataattttttctaggttgacccTAAATTCTACTGGACTA
TTGGGGGACAggtatttttaaaggttggggggatgccaagaaggatAGAT
CATTTAAGAAAGGGGTATCAGACCCCTTACCGCACTATCGAAAGTTCTCT
TCCagatttttattgaatttattttctctTCTCTTCCAGGTTTCTTCTTT
GGGTTATCTGTTCACTTCAAGATCTATCCTTTCATCTATGGCGCGCCATT
CCTCTTTTATTTAACCAAAAAATCGTTAGACGAAACAAGACAACGGAACG
TCACTATTTTACAATTCACAATCAAGATGGTAACTTCACTGCAAAATATC
TTGTTTGGTTTGGTCTCCCTGGCAACTTTCTTTGGAATGGGAGCATTCAT
GTTTTCATTGTTAGTTTGATTTTTACGACTGTTTAATTTGTTTTCCTTaa
gtgtatatattttcgcgggtactaaattttcgcgaaatttactacggtat
ttttcaaaaacacaaaatcgcgaaaataaatACGCTTTTCATAAATTCGT
TTAACCCTTCTTAAAAAATATCCAACTTAGCGAATTGTGAAATTTAATAA
ATGCGAAAAATTCCAAAGAGAAACGATCGCGAAATTTAGTACTCGCGAAA
ACACGTTTCTCGGAAAAAAATTCGCGGTTTGCTAAAATTTAATAACcgca
aaaatatatacacttataggcttggggacacgagaagtttttttcgcgtt
ggtgcaatgcaacatgcatcatcccaccaacctgaaacgctttctcgtgt
ctccaccccatttttcttttaataacatttgtgcttctctcacttttgtc
ccagggacaaaatcagcgtgtcttttgggtatttccctcactttttgtcc
catgaaacaaaaaaagaaaccatgagacgCGCACTTtctttcttgtgttg
gtggtaTGGAGCATGTTGAATTGCatcaacgcgaaaaaaacttcttgtgt
ccccaagcctttaaggTATTTCCTGTGAAGTTTTGGTTGTTCGTTAGCCG
ttactactctcgggtacctaatagccggggggtttggaataagcaggggg
gttggaataaaaatgtcctgggtggaaaatgttcgaaaaggaggctgata
cagcagaattagggcaaaagagggaactNNNNNNNNNNNNNNNNccaaaa
atcaataagcgggggggttggaataagaatgtcctgggtggaaaattttc
gaaaatttaattAGCAggccccccggctattaggctAATAGTTCTCTTAA
GATGGTGCGCTCCTTCACTTGCTTACATTAAATAAGGtgttattaattat
taattttCGTAGTTTCTTCGAAAGATTCATTGTATTTGTGCTTATcacga
ttttgtaattttcctcTTCAGATATGGTTTTGACTTTATCGAGAACACTT
ATCTTTTCCATCTCTCGCGTATCGATATGCAACACAACTTCTCCCCGTAC
TTCTACGTCCTAAAGACCACTCAAGGATTGTGGGtcggtgacgtcatcaa
tcgCTTAGCCTTTATACCGCAGATGGGGACAGTGTTATGGATAGGGGCTA
AATTTTATGACCGATTACCGCTGGCATTGTTCTTGCAGACTTTTGCATTT
GTCACGTTTAATAAAGTTTGTACATCACAGGTATGCTAATACTAAATTTG
TTGTTTGCCTAAAAGGgagaaaatttggcgggaatttaattttagCGGAT
GGtcgaaaaagattttcagaGGTAATGGCGAGTGGCTAGAAAGATGAAAT
TTGGCGTTTGGAGGCTATTTTTTAGTGTCGATTTaatttatcaaatcgct
ttagGTGTACGAACCCGGGAGATGcaagatgacgggtatgtccgagccaa
agtttgagactgaatttcgaaaattttgtcaattttttgactatttcctt
gaaatttcagccaaaattttcaaatttagtccaaatttcaaccCTGTGAG
agagttgaattttgattttcgtaattttggaacccttcagagactcaatt
tgctttttaatggtttttgtaccctttTGAGGGACTtttgagggtgtgaa
aaagggacccttaccATACCTGACACCCATTTTACCTAAGTACACCCTCC
CCCGGTGTACAAACtttcagattttaatttttactcGAAAGTTAATATCT
TTGAAGATTCTTAACAATACGACTGGTGAGAGTTTACGAAGACGATAGAT
ATCAAAGTttaagtactctcgggtacttaatagccggggcgtttggaata
agcggggggggggggttggaaaaaatctgctcactcgccaaaataagttc
ccgccaaaattaaattttttgttccctTGCCTAAatacccctgaaattca
tcaaatttgctcaaaataaggcaaaatggaacagatttacgctgtcattc
gccaaaattagttcccaccaaaatttaaaaaaatcactattcgccaaaat
aagtccccgccaaagttaaaatatttcaagattttcgccGCTCGCCAAAa
ctagttcccgccaaaataagttcccttaaggtagtctaTTATTTATGTTT
CTCAGTATttgcatggaggtataaagaaagacaggagaagtatgctattg
taaccaagctcgccctacgattaaaaaagttacgatgtatgcatgctcat
aatctcatatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgggc
gagcttagaatttcttttgatacattttataaaagaaatcaaaagacttt
aacgaccaattaccgacacattcaactcctgttttctttatacctctatg
gtatTTGCAACTTTCCAGCAGTTTTGTCATGTTTTGAATTCCCTTTGTTG
TGATACCTCAAAAGAAGGAGAGGTTATTTTCCAAACGTTTTTAAAAGCAC
ATGAATTTTCCACTTGGCTTTTCAACCAAATGACTTTAAACCATctttta
acgttttttttttactcctCATTTCCACTACCTATGTTTTGTAAAgtgtc
aatttcatttttcagtaTTTCATCTGGTACATTGGTCTTCTACCAATGGC
TTATCCTTACCTGCACATTGTTGATCCAAAGAAGAACATCAAGCGAACTG
CTCGTACGAATGTTGTGCAACTTGCAATATGGCTTATGCCACAGGTATTT
AAGTGCTATTTAGCAATACAGATTTTTtgtaagcaactccaatttttggG
TCAGGGTTGGGTTTTCTTAGCAGTCTAactaattttctgaaaaagtcgCT
TTGACCACCTCTGATATTAtgccatatttatgcttattgggtcaagggct
atcgtcTGCCAAAGATAGTGAAAAGcaataatgaaaatgaaaaagaagcg
TGTACATGTTGTTGCTAAGGCTCCCTCAAATTAGCCATTTTTTGCACTAC
CTCGTAATATAAAAGGTATCCCTTGGTCCAATAAGCATAATAGGGTATAA
TATTAGGGGTGGTCAGAGCAATCTTTAAGAAAATAAGCTACAACATAATG
CTAAGAAACCCCAGCATGGACCCGAAAATTGGATTTGCTTATGGTATATG
GAAAAAATATCATCCACTTCTTGGCTCTATCTATATTTCAATTCTTTCTA
AAAGAGTTCAAAGAAAAGTGTTATGAGCTCACCCCTTCCCCCCAgcagac
cttcaattcacgcaaaccgctggggactttaggcgtacaaacttttgcga
ttttcacgaattttgaccctttccgcgaaagtaaatgtctttaaaaattc
taagaagggtcattcgcgaaagttGATGCTCACGAAAAATTCtcgacaaa
atagaaaatctgtaaaacttcaaactttgaataagaTGTTACTTTTATGT
CACTTTTAAgtctgctaaaagactaataagtgtttcaagccaatccaaga
agtatttgtccctctaagccattttttcatgtgaaaattcttaTTTCGTG
TcttaattcgcgaaagtttatgctcgcgaaaaatatttttccgtttaAAT
tcacgaaagtaaatgtcgtgaatttcgcgatttttcgtcctcgcgaaagt
ttctgctcgcgaaagtctgtacgcctaaagtatgaTGTGAATGATGTGAA
AACATAGGTCCAGTCATAATtcacttgttcttataaaaaaagtataagag
ctataccttatcggggaaaataatgtcggagttttatttagtcggggaaa
aaattcgtgACCTAGaagcattttcgtcacttttccccatcgggtaaaat
gataaaatatagGGGAAAAACTCGTCGGGCGAAAATTTCGtcaacccctc
aaaattttcgtcactttttcccCTGATAAGgtattatcttttcaacaaaa
aaaaagaagtgtgTACCACTAGGAGGGCCCCTGTTAGCGAAATTTCTGGA
ATATTTACTTTTAATCGAAATCGTTTTTCCGTTGAaacaccctaaactcg
atccaatccttttttaacacttttttctattgtctacaTGTGCGAAGAAA
TGACTGGGcaggttttagggtggtaaaacggacaaaaaaatgtccgcgcg
gcaattggtacgatggcccctaaggctcGCCAcacacttccagttcttat
aaaatttgtgaactagaactgtctagggtcatggcccagaaggctcacga
gacactgcgcacttccgaCTTTTTTTGTGAcgacactgcgcacttctaaa
aatattttagagacgCAAAAGTCCCTCTCGAAAGATATCCGTAAtggtca
gcaaaatagataccGAGTTTTAATAAATGGGTTGATGATAATATAACGAA
GAGGATCGGAAATCCCGAGTTAAAgaaccgagttacgaaaaaaacGAGTT
ATGACGTTATTTTCGGAAATAAatattgacgtcattttataTCTACCTCA
TGAAGTCGTCATTCTAAatttcgtaactcggtttttggacctaccccggt
ggggtggaggtcctataaattagcattttctcgagatttcatcattagtt
ttttctgattttttgcacaaagatgcgtattaacaatgtctaaaacatgg
cctagtccgatttttgagaaaaattctattcaggctgaaaatgccggaga
tatcccggaaatcgccgtttttgcagattttcattggactttttccttat
atttcgttgttttttcacacaaaaacattatttgtagcaatgcccaccat
cNacatggtttaattgtcaataaaagtgatttttgaagccggaactttct
aaaaatcgccggaacagcctattttcgccggaaaaacggtatNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNttttttggcattttctcgagttttc
atcattagttttttctgattttttgcacaaagatgcgtattaacaatgtc
taaaacatggcctagtccgatttttgataaaattctattccggctgaaaa
tgccggaaaaatcccggaaatcgccgtttttgcagattttcatttgactt
tttcctaatatttctttgtttcttcACAGAGAAAcgttattgataacaat
gctcaccatcaagcatgattcaattgtcaataaaactgatttttgcaacc
agaacttcctatttatttatttctacaacccttccctcccatcaacaatc
aatgatgaattcattgcgttgtgtattttcgctaaatgctgtattttctg
actgatttttttcatttttcttttcgcattgctatctaactttcatcatc
aggtaggtccaatcagcATCTAGCTCGTTTAACTTAACTTCAATTTTCGT
TCTTTTagattttcgagttattttggcGTTCCCAGCAGAAGGCTCGAAAA
CACGCACTTCTAGTTTTCACAAAATTGATATTTggtcacttttttcttcc
cCGATTTAAGCTCGAAAAATTCCCCGATTTTTGCCACTGAGGGGAAGTTT
TGCTGACTAGCACTTAACTCGGAAATGAACAACTCGGAAGTATTAACTCG
TTTTGCGCAACTCGACATTCATTTTAtagaccaaaaaaaatttcattgcg
CGGGCCGCTCGCATGGAAATTTCCGGCCGTGACAAAAAGtaagaagtgcg
cagtgtcacttgagccttctgagccattgaccctagacagtagttcacaa
attttataagagctGGAAGTGCGTGAAAACTAGAAGTGCGTgatttgagc
cttctgggccatcgtaaattggcggctacggtcgaaaaggtgcattgcag
catctttaattttgattgttttctctTTCATCTATAGGCTGTTTGGTTAG
GGTTGGCTTATTTGTACGAATTTCGAAAGTTGGATGTTTTAGTGTATGTC
TGGCTGGCATCTCTTGTATTCCTGGGAGCGAATATATATTTGTTGAAAAG
CATGATGGGAAGTTTTGCAATCATCAAGGGTGATGAAGAAATGGAGAAAG
AAGATTGAAATACTTTTATTCATACTTATATACTTGTACAGAGATTTGAA
GGGTCAGTAACATAAATATGGACGAAAATGGTTAAACTTTTATACTGTTA
TACTTTTAAGTGGATTCGGCAAAAAATGCCAAATCAATGATACGTCAAAT
TTAACAAAGTCTTTTTAAGATAGAATTTTATggatttaatgtttttttgt
gtAAGAAATACCACGTATCTATTTAGTTTATCAGAGGTCTACAATcctgg
ccataatatttgagacaaaagggaaattcccacgaaatcttataaccaca
agtattttggaaagcgctctaaattaggttaaacgaatagagttttaact
ctgagttaggaccttagaatctgaggatccaaaagtcccagaatggtcca
acagggctcagaatatagcctggtagtcaattaaccccacccaaatcaaa
atactcgaataaatttatcaattagcccaaaaacgactttctcgcccgaa
ttccaaattttgaaaaacgaggaaataagctaaattctcaatatattttg
gccagGATTGTACACTGTTCTTACTGTATCTgctaaattttagaaaatcg
aGCATACGTTAAAACTCTCACTTTAGCCAACTGTCGCTAAATGAAATTCA
TGCTAAAGGTAACCAAAGTTTTTCGATCGCAAAAGATGTTAAAAGACTG Coding sequence (CDS) from alignment at sc0000118:433743..443741+ >TCONS_00010898 ID=TCONS_00010898|Name=TCONS_00010898|organism=Clytia hemisphaerica|type=CDS|length=6465bp|location=Sequence derived from alignment at sc0000118:433743..443741+ (Clytia hemisphaerica)
tcagaaattaacgcaaaaactaaaaaaacaaacagaataaTCATGGATTT
CAAACTCCTTTGCATGGCATTACTTGTTAGAATGTTATTAATATTTTATG
GGACGCACCACGATCGGTATTTTGAAGTCAAATACACCGACATTGATTAC
ACAGTCTTCACAGAAGCAGCAAATCATACCTTGATGGGCGGTACACCCTA
CCAAACACCCACCTACAAATACACGCCCTTATTGGCACTCATACTTCTCC
CGAACATTAGTTTACACTTACTATTCGGTAAAATACTCTTTTGTATTGTT
GATATCGTGGTTGCGATGGTGATGAGTGAAGTCATGAAACTTGGTTCCGT
GAAAGGAGACTTTGCAACGAAAGTAGACGAAGTGATATGTTTTTGTTGGC
TTTTTAACCCGTTCACAATTACCATTTCTTCGCGAGGAAACGCAGAAGCT
ATTCAAATTCTTTTGGTGGTCCTGACTCTGTATTTCATGATGAGTGATCA
CACCTTACTCTCAGGTTTCTTCTTTGGGTTATCTGTTCACTTCAAGATCT
ATCCTTTCATCTATGGCGCGCCATTCCTCTTTTATTTAACCAAAAAATCG
TTAGACGAAACAAGACAACGGAACGTCACTATTTTACAATTCACAATCAA
GATGGTAACTTCACTGCAAAATATCTTGTTTGGTTTGGTCTCCCTGGCAA
CTTTCTTTGGAATGGGAGCATTCATGTTTTCATTATATGGTTTTGACTTT
ATCGAGAACACTTATCTTTTCCATCTCTCGCGTATCGATATGCAACACAA
CTTCTCCCCGTACTTCTACGTCCTAAAGACCACTCAAGGATTGTGGGtcg
gtgacgtcatcaatcgCTTAGCCTTTATACCGCAGATGGGGACAGTGTTA
TGGATAGGGGCTAAATTTTATGACCGATTACCGCTGGCATTGTTCTTGCA
GACTTTTGCATTTGTCACGTTTAATAAAGTTTGTACATCACAGtaTTTCA
TCTGGTACATTGGTCTTCTACCAATGGCTTATCCTTACCTGCACATTGTT
GATCCAAAGAAGAACATCAAGCGAACTGCTCGTACGAATGTTGTGCAACT
TGCAATATGGCTTATGCCACAGGCTGTTTGGTTAGGGTTGGCTTATTTGT
ACGAATTTCGAAAGTTGGATGTTTTAGTGTATGTCTGGCTGGCATCTCTT
GTATTCCTGGGAGCGAATATATATTTGTTGAAAAGCATGATGGGAAGTTT
TGCAATCATCAAGGGTGATGAAGAAATGGAGAAAGAAGATTGAtcagaaa
ttaacgcaaaaactaaaaaaacaaacagaataaTCATGGATTTCAAACTC
CTTTGCATGGCATTACTTGTTAGAATGTTATTAATATTTTATGGGACGCA
CCACGATCGGTATTTTGAAGTCAAATACACCGACATTGATTACACAGTCT
TCACAGAAGCAGCAAATCATACCTTGATGGGCGGTACACCCTACCAAACA
CCCACCTACAAATACACGCCCTTATTGGCACTCATACTTCTCCCGAACAT
TAGTTTACACTTACTATTCGGTAAAATACTCTTTTGTATTGTTGATATCG
TGGTTGCGATGGTGATGAGTGAAGTCATGAAACTTGGTTCCGTGAAAGGA
GACTTTGCAACGAAAGTAGACGAAGTGATATGTTTTTGTTGGCTTTTTAA
CCCGTTCACAATTACCATTTCTTCGCGAGGAAACGCAGAAGCTATTCAAA
TTCTTTTGGTGGTCCTGACTCTGTATTTCATGATGAGTGATCACACCTTA
CTCTCAGGTTTCTTCTTTGGGTTATCTGTTCACTTCAAGATCTATCCTTT
CATCTATGGCGCGCCATTCCTCTTTTATTTAACCAAAAAATCGTTAGACG
AAACAAGACAACGGAACGTCACTATTTTACAATTCACAATCAAGATGGTA
ACTTCACTGCAAAATATCTTGTTTGGTTTGGTCTCCCTGGCAACTTTCTT
TGGAATGGGAGCATTCATGTTTTCATTATATGGTTTTGACTTTATCGAGA
ACACTTATCTTTTCCATCTCTCGCGTATCGATATGCAACACAACTTCTCC
CCGTACTTCTACGTCCTAAAGACCACTCAAGGATTGTGGGtcggtgacgt
catcaatcgCTTAGCCTTTATACCGCAGATGGGGACAGTGTTATGGATAG
GGGCTAAATTTTATGACCGATTACCGCTGGCATTGTTCTTGCAGACTTTT
GCATTTGTCACGTTTAATAAAGTTTGTACATCACAGtaTTTCATCTGGTA
CATTGGTCTTCTACCAATGGCTTATCCTTACCTGCACATTGTTGATCCAA
AGAAGAACATCAAGCGAACTGCTCGTACGAATGTTGTGCAACTTGCAATA
TGGCTTATGCCACAGGCTGTTTGGTTAGGGTTGGCTTATTTGTACGAATT
TCGAAAGTTGGATGTTTTAGTGTATGTCTGGCTGGCATCTCTTGTATTCC
TGGGAGCGAATATATATTTGTTGAAAAGCATGATGGGAAGTTTTGCAATC
ATCAAGGGTGATGAAGAAATGGAGAAAGAAGATTGAtcagaaattaacgc
aaaaactaaaaaaacaaacagaataaTCATGGATTTCAAACTCCTTTGCA
TGGCATTACTTGTTAGAATGTTATTAATATTTTATGGGACGCACCACGAT
CGGTATTTTGAAGTCAAATACACCGACATTGATTACACAGTCTTCACAGA
AGCAGCAAATCATACCTTGATGGGCGGTACACCCTACCAAACACCCACCT
ACAAATACACGCCCTTATTGGCACTCATACTTCTCCCGAACATTAGTTTA
CACTTACTATTCGGTAAAATACTCTTTTGTATTGTTGATATCGTGGTTGC
GATGGTGATGAGTGAAGTCATGAAACTTGGTTCCGTGAAAGGAGACTTTG
CAACGAAAGTAGACGAAGTGATATGTTTTTGTTGGCTTTTTAACCCGTTC
ACAATTACCATTTCTTCGCGAGGAAACGCAGAAGCTATTCAAATTCTTTT
GGTGGTCCTGACTCTGTATTTCATGATGAGTGATCACACCTTACTCTCAG
GTTTCTTCTTTGGGTTATCTGTTCACTTCAAGATCTATCCTTTCATCTAT
GGCGCGCCATTCCTCTTTTATTTAACCAAAAAATCGTTAGACGAAACAAG
ACAACGGAACGTCACTATTTTACAATTCACAATCAAGATGGTAACTTCAC
TGCAAAATATCTTGTTTGGTTTGGTCTCCCTGGCAACTTTCTTTGGAATG
GGAGCATTCATGTTTTCATTATATGGTTTTGACTTTATCGAGAACACTTA
TCTTTTCCATCTCTCGCGTATCGATATGCAACACAACTTCTCCCCGTACT
TCTACGTCCTAAAGACCACTCAAGGATTGTGGGtcggtgacgtcatcaat
cgCTTAGCCTTTATACCGCAGATGGGGACAGTGTTATGGATAGGGGCTAA
ATTTTATGACCGATTACCGCTGGCATTGTTCTTGCAGACTTTTGCATTTG
TCACGTTTAATAAAGTTTGTACATCACAGtaTTTCATCTGGTACATTGGT
CTTCTACCAATGGCTTATCCTTACCTGCACATTGTTGATCCAAAGAAGAA
CATCAAGCGAACTGCTCGTACGAATGTTGTGCAACTTGCAATATGGCTTA
TGCCACAGGCTGTTTGGTTAGGGTTGGCTTATTTGTACGAATTTCGAAAG
TTGGATGTTTTAGTGTATGTCTGGCTGGCATCTCTTGTATTCCTGGGAGC
GAATATATATTTGTTGAAAAGCATGATGGGAAGTTTTGCAATCATCAAGG
GTGATGAAGAAATGGAGAAAGAAGATTGAtcagaaattaacgcaaaaact
aaaaaaacaaacagaataaTCATGGATTTCAAACTCCTTTGCATGGCATT
ACTTGTTAGAATGTTATTAATATTTTATGGGACGCACCACGATCGGTATT
TTGAAGTCAAATACACCGACATTGATTACACAGTCTTCACAGAAGCAGCA
AATCATACCTTGATGGGCGGTACACCCTACCAAACACCCACCTACAAATA
CACGCCCTTATTGGCACTCATACTTCTCCCGAACATTAGTTTACACTTAC
TATTCGGTAAAATACTCTTTTGTATTGTTGATATCGTGGTTGCGATGGTG
ATGAGTGAAGTCATGAAACTTGGTTCCGTGAAAGGAGACTTTGCAACGAA
AGTAGACGAAGTGATATGTTTTTGTTGGCTTTTTAACCCGTTCACAATTA
CCATTTCTTCGCGAGGAAACGCAGAAGCTATTCAAATTCTTTTGGTGGTC
CTGACTCTGTATTTCATGATGAGTGATCACACCTTACTCTCAGGTTTCTT
CTTTGGGTTATCTGTTCACTTCAAGATCTATCCTTTCATCTATGGCGCGC
CATTCCTCTTTTATTTAACCAAAAAATCGTTAGACGAAACAAGACAACGG
AACGTCACTATTTTACAATTCACAATCAAGATGGTAACTTCACTGCAAAA
TATCTTGTTTGGTTTGGTCTCCCTGGCAACTTTCTTTGGAATGGGAGCAT
TCATGTTTTCATTATATGGTTTTGACTTTATCGAGAACACTTATCTTTTC
CATCTCTCGCGTATCGATATGCAACACAACTTCTCCCCGTACTTCTACGT
CCTAAAGACCACTCAAGGATTGTGGGtcggtgacgtcatcaatcgCTTAG
CCTTTATACCGCAGATGGGGACAGTGTTATGGATAGGGGCTAAATTTTAT
GACCGATTACCGCTGGCATTGTTCTTGCAGACTTTTGCATTTGTCACGTT
TAATAAAGTTTGTACATCACAGtaTTTCATCTGGTACATTGGTCTTCTAC
CAATGGCTTATCCTTACCTGCACATTGTTGATCCAAAGAAGAACATCAAG
CGAACTGCTCGTACGAATGTTGTGCAACTTGCAATATGGCTTATGCCACA
GGCTGTTTGGTTAGGGTTGGCTTATTTGTACGAATTTCGAAAGTTGGATG
TTTTAGTGTATGTCTGGCTGGCATCTCTTGTATTCCTGGGAGCGAATATA
TATTTGTTGAAAAGCATGATGGGAAGTTTTGCAATCATCAAGGGTGATGA
AGAAATGGAGAAAGAAGATTGAtcagaaattaacgcaaaaactaaaaaaa
caaacagaataaTCATGGATTTCAAACTCCTTTGCATGGCATTACTTGTT
AGAATGTTATTAATATTTTATGGGACGCACCACGATCGGTATTTTGAAGT
CAAATACACCGACATTGATTACACAGTCTTCACAGAAGCAGCAAATCATA
CCTTGATGGGCGGTACACCCTACCAAACACCCACCTACAAATACACGCCC
TTATTGGCACTCATACTTCTCCCGAACATTAGTTTACACTTACTATTCGG
TAAAATACTCTTTTGTATTGTTGATATCGTGGTTGCGATGGTGATGAGTG
AAGTCATGAAACTTGGTTCCGTGAAAGGAGACTTTGCAACGAAAGTAGAC
GAAGTGATATGTTTTTGTTGGCTTTTTAACCCGTTCACAATTACCATTTC
TTCGCGAGGAAACGCAGAAGCTATTCAAATTCTTTTGGTGGTCCTGACTC
TGTATTTCATGATGAGTGATCACACCTTACTCTCAGGTTTCTTCTTTGGG
TTATCTGTTCACTTCAAGATCTATCCTTTCATCTATGGCGCGCCATTCCT
CTTTTATTTAACCAAAAAATCGTTAGACGAAACAAGACAACGGAACGTCA
CTATTTTACAATTCACAATCAAGATGGTAACTTCACTGCAAAATATCTTG
TTTGGTTTGGTCTCCCTGGCAACTTTCTTTGGAATGGGAGCATTCATGTT
TTCATTATATGGTTTTGACTTTATCGAGAACACTTATCTTTTCCATCTCT
CGCGTATCGATATGCAACACAACTTCTCCCCGTACTTCTACGTCCTAAAG
ACCACTCAAGGATTGTGGGtcggtgacgtcatcaatcgCTTAGCCTTTAT
ACCGCAGATGGGGACAGTGTTATGGATAGGGGCTAAATTTTATGACCGAT
TACCGCTGGCATTGTTCTTGCAGACTTTTGCATTTGTCACGTTTAATAAA
GTTTGTACATCACAGtaTTTCATCTGGTACATTGGTCTTCTACCAATGGC
TTATCCTTACCTGCACATTGTTGATCCAAAGAAGAACATCAAGCGAACTG
CTCGTACGAATGTTGTGCAACTTGCAATATGGCTTATGCCACAGGCTGTT
TGGTTAGGGTTGGCTTATTTGTACGAATTTCGAAAGTTGGATGTTTTAGT
GTATGTCTGGCTGGCATCTCTTGTATTCCTGGGAGCGAATATATATTTGT
TGAAAAGCATGATGGGAAGTTTTGCAATCATCAAGGGTGATGAAGAAATG
GAGAAAGAAGATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010898-exon-sc0000118-1491911889:433743..434257 | TCONS_00010898-exon-sc0000118-1491911889:433743..434257 | Clytia hemisphaerica | exon |
| TCONS_00010898-exon-sc0000118-1510915933:433743..434257 | TCONS_00010898-exon-sc0000118-1510915933:433743..434257 | Clytia hemisphaerica | exon |
| TCONS_00010898-exon-sc0000118-1575043694:433743..434257 | TCONS_00010898-exon-sc0000118-1575043694:433743..434257 | Clytia hemisphaerica | exon |
| TCONS_00010898-exon-sc0000118-1491911889:436132..436351 | TCONS_00010898-exon-sc0000118-1491911889:436132..436351 | Clytia hemisphaerica | exon |
| TCONS_00010898-exon-sc0000118-1510915933:436132..436351 | TCONS_00010898-exon-sc0000118-1510915933:436132..436351 | Clytia hemisphaerica | exon |
| TCONS_00010898-exon-sc0000118-1575043694:436132..436351 | TCONS_00010898-exon-sc0000118-1575043694:436132..436351 | Clytia hemisphaerica | exon |
| TCONS_00010898-exon-sc0000118-1491911889:437364..437622 | TCONS_00010898-exon-sc0000118-1491911889:437364..437622 | Clytia hemisphaerica | exon |
| TCONS_00010898-exon-sc0000118-1510915933:437364..437622 | TCONS_00010898-exon-sc0000118-1510915933:437364..437622 | Clytia hemisphaerica | exon |
| TCONS_00010898-exon-sc0000118-1575043694:437364..437622 | TCONS_00010898-exon-sc0000118-1575043694:437364..437622 | Clytia hemisphaerica | exon |
| TCONS_00010898-exon-sc0000118-1491911889:439358..439486 | TCONS_00010898-exon-sc0000118-1491911889:439358..439486 | Clytia hemisphaerica | exon |
| TCONS_00010898-exon-sc0000118-1510915933:439358..439486 | TCONS_00010898-exon-sc0000118-1510915933:439358..439486 | Clytia hemisphaerica | exon |
| TCONS_00010898-exon-sc0000118-1575043694:439358..439486 | TCONS_00010898-exon-sc0000118-1575043694:439358..439486 | Clytia hemisphaerica | exon |
| TCONS_00010898-exon-sc0000118-1491911889:442880..443741 | TCONS_00010898-exon-sc0000118-1491911889:442880..443741 | Clytia hemisphaerica | exon |
| TCONS_00010898-exon-sc0000118-1510915933:442880..443741 | TCONS_00010898-exon-sc0000118-1510915933:442880..443741 | Clytia hemisphaerica | exon |
| TCONS_00010898-exon-sc0000118-1575043694:442880..443741 | TCONS_00010898-exon-sc0000118-1575043694:442880..443741 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000118 | supercontig | sc0000118:433743..443741 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR007704 | Mannosyltransferase_DXD |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016758 | transferase activity, transferring hexosyl groups |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006506 | GPI anchor biosynthetic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006506 |
GPI anchor biosynthetic process |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0016758 |
transferase activity, transferring hexosyl groups |
Blast
BLAST of TCONS_00010898 vs. Swiss-Prot (Human)
Match: PIGM (GPI mannosyltransferase 1 OS=Homo sapiens GN=PIGM PE=1 SV=1) HSP 1 Score: 211.075 bits (536), Expect = 1.352e-60 Identity = 149/392 (38.01%), Postives = 215/392 (54.85%), Query Frame = 2
Query: 92 IFYGTHHDRYFEVKYTDIDYTVFTEAANHTLMGGXXXXXXXXXXXXXXXXXXXXXXXXXXXFGKILFCIVDIVVAMVMSEVMKLGSVKGDFATKVDEVICFCWLFNPFTITISSRGNAEAIQILLVVLTLYFMMSDHTLLSGFFFGLSVHFKIYPFIYGAPFLFYL-----TKKSLDETRQRNVTILQFTIKMVTSLQNILFGLVSLATFFGMGAFMFSLYGFDFIENTYLFHLSRIDMQHNFSPYFYVLKTTQGLWVGDVINRLAFIPQMGTVLWIGAKFYDRLPLALFLQTFAFVTFNKVCTSQYFIWYIGLLPMAYPYLHIVDPKKNIKRTARTNVVQLAIWLMPQAVWLGLAYLYEFRKLDVLVYVWLASLVFLGANIYLLKSMMGSF 1252
+FYG DR V+YTDIDY VFT+AA G +PY TY+YTPLL +L PNI L LFGK LF D++ A ++ ++ L + A C WL NP + +SSRGNA++I LV++ LY + + F+G +VH KIYP Y P +L KSL + R L +K + + +LF V+ TFF + + YG++F+E+TY +HL+R D++HNFSPYFY+L T + AF+PQ+ + + +Y L FL T FVTFNKVCTSQYF+WY+ LLP+ P ++ + VV L +W + QA+WL AY+ EF+ + +++WLA L FL N +L ++ +
Sbjct: 33 VFYGVFQDRTLHVRYTDIDYQVFTDAARFVTEGRSPYLRATYRYTPLLGWLLTPNIYLSELFGKFLFISCDLLTAFLLYRLLLLKGLGRRQACGY----CVFWLLNPLPMAVSSRGNADSIVASLVLMVLYLIKKRLVACAAVFYGFAVHMKIYPVTYILPITLHLLPDRDNDKSLRQFRYTFQACLYELLKRLCNRAVLLFVAVAGLTFFALSFGFYYEYGWEFLEHTYFYHLTRRDIRHNFSPYFYMLYLTAESKWSFSLGIAAFLPQLILLSAVSFAYYRDLVFCCFLHTSIFVTFNKVCTSQYFLWYLCLLPLVMPL---------VRMPWKRAVVLLMLWFIGQAMWLAPAYVLEFQGKNTFLFIWLAGLFFLLINCSILIQIISHY 411
The following BLAST results are available for this feature:
|
