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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010897 ID=TCONS_00010897|Name=TCONS_00010897|organism=Clytia hemisphaerica|type=transcript|length=1079bp
ataaatatatatttttagatGGTTGTCAAGTTTCCCGATATTTCCAATTC
ACCCGAATTCATCCCGGTCAACAATATTCGTATTTTGATGGATCAATTCA
AGACGAAACCGTTTTATGCGATTTGTTGTTCTCTCTTCGGTATTGAGCCT
TTACGAGGTGATACATGGGATGGCAATGTTGTCGAGAAATTCCAAAGTGT
GGTTGTCGATCAAACCTATCAAGTTGAGTTTATGGAGGATTTAGATTTCT
TGGACAAAAGTCAACCGGTTCAAGTGCGTTTACATTGTGAAATTAACGGG
AAATGTTCGATGGTAAACGACCAACTGGTTGAACTGGGTTTTGCTAAGCA
GAAAGTGTGAGATGAACCGAGTTGGCGATTGTAAGAGAATTTGTTGTTGA
AAAAGATGGCAAGTCGCTATTCTTGGTAtggttttcttttgaaagaaaga
gTTTACGTGCGTGTCCTAGCAATGTATTCGAATCTCTTCGAGTGGAATCT
TGGGAGGGCTCGTATTATCTCTGAATGGCCCACAATGCATCAGCTATTGC
ACACATTCAATGATACAAATTAACATCTGTTGGAGATCTATTAATGATTT
GAGGACTTTGTTATTGCGTTCTAGTTTCCTTTTCCGTTGTCTTTCGCGCA
TGCGCAAAGGGaattatttgagaaaaaaaagatacTTAAATATTTTAGTA
TAAATTCGTATTAGTGAAACCTTTatggaaaaaaaaagattataaaattt
GCTAACTACTTGATGAATAAGAATTTGCGGAATCTGTCCATTGAAAATAA
GCGGAAATTGGTCTGATCAAGAGACTGGTGACTAAAGTTTTAAGGtgtgt
ttttttcttgtgttacAGAAAGTCAGGTCTATAAGACATCTATAAACTAT
ATTAAAGTATAATTTTACAAacaaataaatagaaaaaagagATTAAATTT
ACTACTACTTTATGTAAAATCCATATGTAAATTCttgtatattttctttt
gttataaaaCTTTAGGCTATCTaggtaaaaatacaaaaaacacatttttg
taaccctttttcttgaaatttctctttag Run BLAST on NCBI protein sequence of TCONS_00010897-protein >TCONS_00010897-protein ID=TCONS_00010897-protein|Name=TCONS_00010897-protein|organism=Clytia hemisphaerica|type=polypeptide|length=113bp
MVVKFPDISNSPEFIPVNNIRILMDQFKTKPFYAICCSLFGIEPLRGDTW
DGNVVEKFQSVVVDQTYQVEFMEDLDFLDKSQPVQVRLHCEINGKCSMVN
DQLVELGFAKQKV Run BLAST on NCBI transcript from alignment at sc0000118:431188..432692+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010897 ID=TCONS_00010897|Name=TCONS_00010897|organism=Clytia hemisphaerica|type=transcript|length=1505bp|location=Sequence derived from alignment at sc0000118:431188..432692+ (Clytia hemisphaerica)
ataaatatatatttttagatGGTTGTCAAGTTTCCCGATATTTCCAATTC
ACCCGAATTCATCCCGGTCAACAATATTCGTATTTTGATGGATCAATTCA
AGACGAAACCGTTTTATGCGATTTGTTGTTCTCTCTTCGGTATGGATGTA
TAAtcgttttttttgtctttttcttctaAAATCGTTTGTCAATTTTATGG
TAAAAATGGTAAGATTTTTAAACTTGCTCTTAACTTACATTTACAAATTT
GGTTGCAAGATTGATTTGAGATTTAAGAACAATTATAATGAAACAAGGCA
CGGGTaatcgttttttgtttttttgttacaAAAAGATTCGCGAATGGCTT
CACTCGCGAAATTTTCTTGCCGTGAAAATTTCTCATATTAAAAGTAGTTG
AAGTTAAAGCTTCAaatccaatgaagtataagcccaaagTTTGGgatttg
tataaaaaccacGCGGGCcactcaaggccgcgcaactttagCGGCTTCAA
ACCCTACGTaggagattcgcttctagcccttcggcctTTTACTTCATTGT
TAAACTCTTTTTTAGGTATTGAGCCTTTACGAGGTGATACATGGGATGGC
AATGTTGTCGAGAAATTCCAAAGTGTGGTTGTCGATCAAACCTATCAAGT
TGAGTTTATGGAGGATTTAGATTTCTTGGACAAAAGTCAACCGGTTCAAG
TGCGTTTACATTGTGAAATTAACGGGAAATGTTCGATGGTAAACGACCAA
CTGGTTGAACTGGGTTTTGCTAAGCAGAAAGTGTGAGATGAACCGAGTTG
GCGATTGTAAGAGAATTTGTTGTTGAAAAAGATGGCAAGTCGCTATTCTT
GGTAtggttttcttttgaaagaaagagTTTACGTGCGTGTCCTAGCAATG
TATTCGAATCTCTTCGAGTGGAATCTTGGGAGGGCTCGTATTATCTCTGA
ATGGCCCACAATGCATCAGCTATTGCACACATTCAATGATACAAATTAAC
ATCTGTTGGAGATCTATTAATGATTTGAGGACTTTGTTATTGCGTTCTAG
TTTCCTTTTCCGTTGTCTTTCGCGCATGCGCAAAGGGaattatttgagaa
aaaaaagatacTTAAATATTTTAGTATAAATTCGTATTAGTGAAACCTTT
atggaaaaaaaaagattataaaatttGCTAACTACTTGATGAATAAGAAT
TTGCGGAATCTGTCCATTGAAAATAAGCGGAAATTGGTCTGATCAAGAGA
CTGGTGACTAAAGTTTTAAGGtgtgtttttttcttgtgttacAGAAAGTC
AGGTCTATAAGACATCTATAAACTATATTAAAGTATAATTTTACAAacaa
ataaatagaaaaaagagATTAAATTTACTACTACTTTATGTAAAATCCAT
ATGTAAATTCttgtatattttcttttgttataaaaCTTTAGGCTATCTag
gtaaaaatacaaaaaacacatttttgtaaccctttttcttgaaatttctc
tttag Coding sequence (CDS) from alignment at sc0000118:431188..432692+ >TCONS_00010897 ID=TCONS_00010897|Name=TCONS_00010897|organism=Clytia hemisphaerica|type=CDS|length=684bp|location=Sequence derived from alignment at sc0000118:431188..432692+ (Clytia hemisphaerica)
atGGTTGTCAAGTTTCCCGATATTTCCAATTCACCCGAATTCATCCCGGT
CAACAATATTCGTATTTTGATGGATCAATTCAAGACGAAACCGTTTTATG
CGATTTGTTGTTCTCTCTTCGGTATTGAGCCTTTACGAGGTGATACATGG
GATGGCAATGTTGTCGAGAAATTCCAAAGTGTGGTTGTCGATCAAACCTA
TCAAGTTGAGTTTATGGAGGATTTAGATTTCTTGGACAAAAGTCAACCGG
TTCAAGTGCGTTTACATTGTGAAATTAACGGGAAATGTTCGATGGTAAAC
GACCAACTGGTTGAACTGGGTTTTGCTAAGCAGAAAGTGTGAatGGTTGT
CAAGTTTCCCGATATTTCCAATTCACCCGAATTCATCCCGGTCAACAATA
TTCGTATTTTGATGGATCAATTCAAGACGAAACCGTTTTATGCGATTTGT
TGTTCTCTCTTCGGTATTGAGCCTTTACGAGGTGATACATGGGATGGCAA
TGTTGTCGAGAAATTCCAAAGTGTGGTTGTCGATCAAACCTATCAAGTTG
AGTTTATGGAGGATTTAGATTTCTTGGACAAAAGTCAACCGGTTCAAGTG
CGTTTACATTGTGAAATTAACGGGAAATGTTCGATGGTAAACGACCAACT
GGTTGAACTGGGTTTTGCTAAGCAGAAAGTGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010897-exon-sc0000118-1491911889:431188..431326 | TCONS_00010897-exon-sc0000118-1491911889:431188..431326 | Clytia hemisphaerica | exon |
| TCONS_00010897-exon-sc0000118-1510915933:431188..431326 | TCONS_00010897-exon-sc0000118-1510915933:431188..431326 | Clytia hemisphaerica | exon |
| TCONS_00010897-exon-sc0000118-1575043694:431188..431326 | TCONS_00010897-exon-sc0000118-1575043694:431188..431326 | Clytia hemisphaerica | exon |
| TCONS_00010897-exon-sc0000118-1491911889:431753..432692 | TCONS_00010897-exon-sc0000118-1491911889:431753..432692 | Clytia hemisphaerica | exon |
| TCONS_00010897-exon-sc0000118-1510915933:431753..432692 | TCONS_00010897-exon-sc0000118-1510915933:431753..432692 | Clytia hemisphaerica | exon |
| TCONS_00010897-exon-sc0000118-1575043694:431753..432692 | TCONS_00010897-exon-sc0000118-1575043694:431753..432692 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000118 | supercontig | sc0000118:431188..432692 + |
Blast
The following BLAST results are available for this feature:
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