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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010893 ID=TCONS_00010893|Name=TCONS_00010893|organism=Clytia hemisphaerica|type=transcript|length=2287bpRun BLAST on NCBI protein sequence of TCONS_00010893-protein >TCONS_00010893-protein ID=TCONS_00010893-protein|Name=TCONS_00010893-protein|organism=Clytia hemisphaerica|type=polypeptide|length=553bp LRLLVSKNNKMEFMELIKTPKVDNVVFVRSFNRKKVTGTLCLTSHHLLFVRun BLAST on NCBI transcript from alignment at sc0000118:339213..350128+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00010893 ID=TCONS_00010893|Name=TCONS_00010893|organism=Clytia hemisphaerica|type=transcript|length=10916bp|location=Sequence derived from alignment at sc0000118:339213..350128+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000118:339213..350128+ >TCONS_00010893 ID=TCONS_00010893|Name=TCONS_00010893|organism=Clytia hemisphaerica|type=CDS|length=19944bp|location=Sequence derived from alignment at sc0000118:339213..350128+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00010893 vs. Swiss-Prot (Human)
Match: MTMR9 (Myotubularin-related protein 9 OS=Homo sapiens GN=MTMR9 PE=1 SV=1) HSP 1 Score: 443.351 bits (1139), Expect = 4.431e-146 Identity = 247/545 (45.32%), Postives = 356/545 (65.32%), Query Frame = 3
Query: 33 MEFMELIKTPKVDNVVFVRSFNRKKVTGTLCLTSHHLLFVDRSSISPEEELMILYTSIECLEKKVSGIAGDVTLRLKDFTLLKFKIPSQEDALNVADSVEKLSSLGSATSYYPFFLN--VEILDDGWERFRMQEEYNKIIGASTDWRISSVNQDYKVCRSYPSLVIVPSNCTDDMLRASAGFRQIQRFPILAYLHT-NKIPILRSSQPLTGSGGRRCKDDEKLL-SVIATGHKGTIVDTRSSMVVXXXXXXXXXXIETDYYTHWRRTMHNIEKATHLADTIARLYEACSDT--KAPNWLSKLEASGWMRYIESCLTAALKVAVYVCKDNSPVLVHGENGQDMTLVVTSLAQVLLDPSSRTVLGFESLIMRDWIWAGYPFTKRHQRVGFATNKRKENSATFLLFLDCVHQIMNQYGSTXXXXXXXXXXXXXHSYYSQYGTFLFDCELQREQSKLRQKTTSLWSYLNDEGVLAKYRNPLYEHNEQVLWPSVAPQSMQLWYSMFAK-STLSRGPDSKNELDIVITETKKENEELKIKARMLKERYEEL 1646
MEF ELIKTP+VDNVV R F V GTLCLT HHL+ R + EEL +L+++I+ ++K+ G G + ++ KDF +++ IP E+ LN+A S+E LS+L S T YPFF E+++DGW F ++E+ A+++WR+S VN+++ VC SYP +V VP + D+ LR A FR RFP+L+Y H N + I+RS QPLTG+ GRRCK+DEKL+ + + G +G I+DTRS V ++K GG + +Y WRR +IE+ L +++ +L EAC+D WLSKLEAS W+ +I+ LT A A + ++ + +L+HG G D TL VTSLAQ++L+P SRT+ GFE+LI R+W+ AG+PF +R + + K+K + FLLFLDCV QI+ Q+ +FEFNENFL++LFEH+Y SQ+GTFL + E +R + KL+QKT SLWS++N L+K+ NPL+E N V+WPSVAPQS+ LW +F + + S+ D E + I E N+EL+ K +L+ + EL
Sbjct: 1 MEFAELIKTPRVDNVVLHRPF-YPAVEGTLCLTGHHLILSSRQDNT--EELWLLHSNIDAIDKRFVGSLGTIIIKCKDFRIIQLDIPGMEECLNIASSIEALSTLDSITLMYPFFYRPMFEVIEDGWHSFLPEQEFELYSSATSEWRLSYVNKEFAVCPSYPPIVTVPKSIDDEALRKVATFRHGGRFPVLSYYHKKNGMVIMRSGQPLTGTNGRRCKEDEKLINATLRAGKRGYIIDTRSLNVAQQTRAKGGGFEQEAHYPQWRRIHKSIERYHILQESLIKLVEACNDQTHNMDRWLSKLEASNWLTHIKEILTTACLAAQCIDREGASILIHGTEGTDSTLQVTSLAQIILEPRSRTIRGFEALIEREWLQAGHPFQQRCAQSAYCNTKQKWEAPVFLLFLDCVWQILRQFPCSFEFNENFLIMLFEHAYASQFGTFLGNNESERCKLKLQQKTMSLWSWVNQPSELSKFTNPLFEANNLVIWPSVAPQSLPLWEGIFLRWNRSSKYLDEAYEEMVNIIEY---NKELQAKVNILRRQLAEL 539 The following BLAST results are available for this feature:
BLAST of TCONS_00010893 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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