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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010892 ID=TCONS_00010892|Name=TCONS_00010892|organism=Clytia hemisphaerica|type=transcript|length=1772bp
CTGGGACcaaggagaagaaaaaaatggcaCTCAAGCTAAGTATTTTAGCA
TCGTTACTGGTGGCAtatttgctgattcagcatatATCATGCAGACTCGT
TCCAGCCCCCTCATCTTCGACTTCGACACTTCCATCCAAGTCAGAGTATG
TACCTGACCCAATGGCGTCGAGAATCATGCCAACCCCAACACAATCACAA
ATTGTCCCTATACCTTACTCAACACGAGTTATGACAACTGAATTCGAAAT
TGATGATGGCAAAAGAACCGAAACTACATCCAGTGAAGCAAGCCCTGCTC
GAAAAGCATCTACTGAAACAACAACAACTGAAGTCACAACCAGTGAAATG
ATGTCTACCGAAAATGTATCCACTGGAACGATATCACCACCCTTATCAGT
GATTACCACTGAAATAAATACATATACTGAAATAACATCAACTGAAGTCA
CATCCAATGAGACGACAACCGAAAATATAATCGCTGGGATGGTTCCCAGG
GACGAGCTTGAATGTGTCGCATTTTGTCTTATTCTTCGAAAAACATCAAA
CCGAAAGACTGCTCAAGCATGTAAATACGAATGTTCACATAGATTCGCTC
CCAGTCCCAAACCAACAGATTTTGACAAGTGTGAATCAGAATGTAAGGTA
GAAAGAAAAAGGTGTGAAAACCCTGGCCCAGAAACTGAATTATTGGTCGA
TTGTGAAGAGGAAGATAGATTATGTAAAAGAACTTGTTTGGTACATTTCA
AAGGAGATGGCTTTGAGAACAAATTCACCACGAATAATCCGTTGACCACA
GATGAACACGAAAGTACAACTCCAGGAGATGAGTATGTGCAAACAACTGA
CGAATTATGTTTTACCGGATGTAAAGTCAAACAACGTATTTGCTTCACAA
ACATCAAAACTGAAGATTTCCAAGAAACTCTCCTGTGTATGCAAGCTTGT
TCAGACACTTGCTTGCATCATTGTAAAGCGAAAAAAATTCCAGCCGTGAA
GCCGACTACAAAAAGAATCCTTAGTACGTGTTTGACAGAGTGTAAAAAGG
AGCAGGTTTCTTGTCTAGAAGTTGAATATCGCGACCCCATTATTTGTGTA
AGAGCTTCAAATCTCTGCAAAGAAAAATGTAACCGAGCGACTACCATGTT
GAAACGAACTAGTTCCGTAGTCAGGGGACTCGCGTTACAATCTTCCGGCA
AGCTTCCACGATTAAAAATCTCTACCTCCGTATCTGACACCCGACAAGAG
AAGCTAGGATCACTGCGATCGCTCAACCTTGTTGAATGGTTAACAAAAAG
AAAAGGGCGGTCCTCGAAATCACCAATAAGTACAGCTACCtcagaaaatg
aagaaagatcATCCACAGCAACACCACGCCTTTCAACGCCCTCATTCCAC
CAAAGTGTAGATTCAAACCCACTAGAAGAACAGTGCCTCGAACAATGCAG
AAGAGAAAAGAGAATTTGTTGGGTAGATTGGGAAGATTCTACCCTTTGTT
TCCAACTCTTCAACTTGTGCAATGGGGATTgtaactttttgtgttggcgG
GGGGTAGAATTTAAGAATGAGGGGTACTAGTAAACTACTCGAACAAAAGT
GTACCATAATTTGTGGAGTCAGTTAGGATAACAATTGTGCAAATCGTGAC
AAAATCGTAAAATTTTGCACAGTGGTCCAAAATGGTCTAtagatgaaaat
tttaaggggaGACAAGTGTCAAATGTCACCTGTCACTCCCTGTCAGCATT
TGTTGACAAACAAATATGTCAc Run BLAST on NCBI protein sequence of TCONS_00010892-protein >TCONS_00010892-protein ID=TCONS_00010892-protein|Name=TCONS_00010892-protein|organism=Clytia hemisphaerica|type=polypeptide|length=525bp
GTKEKKKMALKLSILASLLVAYLLIQHISCRLVPAPSSSTSTLPSKSEYV
PDPMASRIMPTPTQSQIVPIPYSTRVMTTEFEIDDGKRTETTSSEASPAR
KASTETTTTEVTTSEMMSTENVSTGTISPPLSVITTEINTYTEITSTEVT
SNETTTENIIAGMVPRDELECVAFCLILRKTSNRKTAQACKYECSHRFAP
SPKPTDFDKCESECKVERKRCENPGPETELLVDCEEEDRLCKRTCLVHFK
GDGFENKFTTNNPLTTDEHESTTPGDEYVQTTDELCFTGCKVKQRICFTN
IKTEDFQETLLCMQACSDTCLHHCKAKKIPAVKPTTKRILSTCLTECKKE
QVSCLEVEYRDPIICVRASNLCKEKCNRATTMLKRTSSVVRGLALQSSGK
LPRLKISTSVSDTRQEKLGSLRSLNLVEWLTKRKGRSSKSPISTATSENE
ERSSTATPRLSTPSFHQSVDSNPLEEQCLEQCRREKRICWVDWEDSTLCF
QLFNLCNGDCNFLCWRGVEFKNEGY Run BLAST on NCBI transcript from alignment at sc0000118:274951..277167+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010892 ID=TCONS_00010892|Name=TCONS_00010892|organism=Clytia hemisphaerica|type=transcript|length=2217bp|location=Sequence derived from alignment at sc0000118:274951..277167+ (Clytia hemisphaerica)
CTGGGACcaaggagaagaaaaaaatggcaCTCAAGCTAAGGTAATGAGTC
TACTATATTTCAgtcttagaaaaattttcaaaacttcgaCCTACCTTCGA
CTTAGAGCCTTTTATCTATTTTATACGGTATAAATTCTGTATTGAAGAAC
TCGTTGAAGAAgggaaacacccctgtctcagtgaaggaaaataaaagaat
ttcatCGGGTACTTACTTTTAATGACGTGAAAAAACTCAATAGGATGGTA
AAATGTTTACCGCCAGACATCTTGATTAGGGAAAGGTTCTATTCTTCTTT
AAGGGCGAGAGTATTGAGTTTTTGctctcccagctggcacacaacgtttt
ttcgacgttcatctaacgttcacaacgtccatataacgttagattaacgt
tgaaacaacgttgtgtgccaactgggctCTTAAAGAAACCTGCAAATAAA
ACTCCATGTTCTTAATGTACTATTCAAACGTTTAGTATTTTAGCATCGTT
ACTGGTGGCAtatttgctgattcagcatatATCATGCAGACTCGTTCCAG
CCCCCTCATCTTCGACTTCGACACTTCCATCCAAGTCAGAGTATGTACCT
GACCCAATGGCGTCGAGAATCATGCCAACCCCAACACAATCACAAATTGT
CCCTATACCTTACTCAACACGAGTTATGACAACTGAATTCGAAATTGATG
ATGGCAAAAGAACCGAAACTACATCCAGTGAAGCAAGCCCTGCTCGAAAA
GCATCTACTGAAACAACAACAACTGAAGTCACAACCAGTGAAATGATGTC
TACCGAAAATGTATCCACTGGAACGATATCACCACCCTTATCAGTGATTA
CCACTGAAATAAATACATATACTGAAATAACATCAACTGAAGTCACATCC
AATGAGACGACAACCGAAAATATAATCGCTGGGATGGTTCCCAGGGACGA
GCTTGAATGTGTCGCATTTTGTCTTATTCTTCGAAAAACATCAAACCGAA
AGACTGCTCAAGCATGTAAATACGAATGTTCACATAGATTCGCTCCCAGT
CCCAAACCAACAGATTTTGACAAGTGTGAATCAGAATGTAAGGTAGAAAG
AAAAAGGTGTGAAAACCCTGGCCCAGAAACTGAATTATTGGTCGATTGTG
AAGAGGAAGATAGATTATGTAAAAGAACTTGTTTGGTACATTTCAAAGGA
GATGGCTTTGAGAACAAATTCACCACGAATAATCCGTTGACCACAGATGA
ACACGAAAGTACAACTCCAGGAGATGAGTATGTGCAAACAACTGACGAAT
TATGTTTTACCGGATGTAAAGTCAAACAACGTATTTGCTTCACAAACATC
AAAACTGAAGATTTCCAAGAAACTCTCCTGTGTATGCAAGCTTGTTCAGA
CACTTGCTTGCATCATTGTAAAGCGAAAAAAATTCCAGCCGTGAAGCCGA
CTACAAAAAGAATCCTTAGTACGTGTTTGACAGAGTGTAAAAAGGAGCAG
GTTTCTTGTCTAGAAGTTGAATATCGCGACCCCATTATTTGTGTAAGAGC
TTCAAATCTCTGCAAAGAAAAATGTAACCGAGCGACTACCATGTTGAAAC
GAACTAGTTCCGTAGTCAGGGGACTCGCGTTACAATCTTCCGGCAAGCTT
CCACGATTAAAAATCTCTACCTCCGTATCTGACACCCGACAAGAGAAGCT
AGGATCACTGCGATCGCTCAACCTTGTTGAATGGTTAACAAAAAGAAAAG
GGCGGTCCTCGAAATCACCAATAAGTACAGCTACCtcagaaaatgaagaa
agatcATCCACAGCAACACCACGCCTTTCAACGCCCTCATTCCACCAAAG
TGTAGATTCAAACCCACTAGAAGAACAGTGCCTCGAACAATGCAGAAGAG
AAAAGAGAATTTGTTGGGTAGATTGGGAAGATTCTACCCTTTGTTTCCAA
CTCTTCAACTTGTGCAATGGGGATTgtaactttttgtgttggcgGGGGGT
AGAATTTAAGAATGAGGGGTACTAGTAAACTACTCGAACAAAAGTGTACC
ATAATTTGTGGAGTCAGTTAGGATAACAATTGTGCAAATCGTGACAAAAT
CGTAAAATTTTGCACAGTGGTCCAAAATGGTCTAtagatgaaaattttaa
ggggaGACAAGTGTCAAATGTCACCTGTCACTCCCTGTCAGCATTTGTTG
ACAAACAAATATGTCAc Coding sequence (CDS) from alignment at sc0000118:274951..277167+ >TCONS_00010892 ID=TCONS_00010892|Name=TCONS_00010892|organism=Clytia hemisphaerica|type=CDS|length=3156bp|location=Sequence derived from alignment at sc0000118:274951..277167+ (Clytia hemisphaerica)
GGGACcaaggagaagaaaaaaatggcaCTCAAGCTAAGTATTTTAGCATC
GTTACTGGTGGCAtatttgctgattcagcatatATCATGCAGACTCGTTC
CAGCCCCCTCATCTTCGACTTCGACACTTCCATCCAAGTCAGAGTATGTA
CCTGACCCAATGGCGTCGAGAATCATGCCAACCCCAACACAATCACAAAT
TGTCCCTATACCTTACTCAACACGAGTTATGACAACTGAATTCGAAATTG
ATGATGGCAAAAGAACCGAAACTACATCCAGTGAAGCAAGCCCTGCTCGA
AAAGCATCTACTGAAACAACAACAACTGAAGTCACAACCAGTGAAATGAT
GTCTACCGAAAATGTATCCACTGGAACGATATCACCACCCTTATCAGTGA
TTACCACTGAAATAAATACATATACTGAAATAACATCAACTGAAGTCACA
TCCAATGAGACGACAACCGAAAATATAATCGCTGGGATGGTTCCCAGGGA
CGAGCTTGAATGTGTCGCATTTTGTCTTATTCTTCGAAAAACATCAAACC
GAAAGACTGCTCAAGCATGTAAATACGAATGTTCACATAGATTCGCTCCC
AGTCCCAAACCAACAGATTTTGACAAGTGTGAATCAGAATGTAAGGTAGA
AAGAAAAAGGTGTGAAAACCCTGGCCCAGAAACTGAATTATTGGTCGATT
GTGAAGAGGAAGATAGATTATGTAAAAGAACTTGTTTGGTACATTTCAAA
GGAGATGGCTTTGAGAACAAATTCACCACGAATAATCCGTTGACCACAGA
TGAACACGAAAGTACAACTCCAGGAGATGAGTATGTGCAAACAACTGACG
AATTATGTTTTACCGGATGTAAAGTCAAACAACGTATTTGCTTCACAAAC
ATCAAAACTGAAGATTTCCAAGAAACTCTCCTGTGTATGCAAGCTTGTTC
AGACACTTGCTTGCATCATTGTAAAGCGAAAAAAATTCCAGCCGTGAAGC
CGACTACAAAAAGAATCCTTAGTACGTGTTTGACAGAGTGTAAAAAGGAG
CAGGTTTCTTGTCTAGAAGTTGAATATCGCGACCCCATTATTTGTGTAAG
AGCTTCAAATCTCTGCAAAGAAAAATGTAACCGAGCGACTACCATGTTGA
AACGAACTAGTTCCGTAGTCAGGGGACTCGCGTTACAATCTTCCGGCAAG
CTTCCACGATTAAAAATCTCTACCTCCGTATCTGACACCCGACAAGAGAA
GCTAGGATCACTGCGATCGCTCAACCTTGTTGAATGGTTAACAAAAAGAA
AAGGGCGGTCCTCGAAATCACCAATAAGTACAGCTACCtcagaaaatgaa
gaaagatcATCCACAGCAACACCACGCCTTTCAACGCCCTCATTCCACCA
AAGTGTAGATTCAAACCCACTAGAAGAACAGTGCCTCGAACAATGCAGAA
GAGAAAAGAGAATTTGTTGGGTAGATTGGGAAGATTCTACCCTTTGTTTC
CAACTCTTCAACTTGTGCAATGGGGATTgtaactttttgtgttggcgGGG
GGTAGAATTTAAGAATGAGGGGTACTAGGGGACcaaggagaagaaaaaaa
tggcaCTCAAGCTAAGTATTTTAGCATCGTTACTGGTGGCAtatttgctg
attcagcatatATCATGCAGACTCGTTCCAGCCCCCTCATCTTCGACTTC
GACACTTCCATCCAAGTCAGAGTATGTACCTGACCCAATGGCGTCGAGAA
TCATGCCAACCCCAACACAATCACAAATTGTCCCTATACCTTACTCAACA
CGAGTTATGACAACTGAATTCGAAATTGATGATGGCAAAAGAACCGAAAC
TACATCCAGTGAAGCAAGCCCTGCTCGAAAAGCATCTACTGAAACAACAA
CAACTGAAGTCACAACCAGTGAAATGATGTCTACCGAAAATGTATCCACT
GGAACGATATCACCACCCTTATCAGTGATTACCACTGAAATAAATACATA
TACTGAAATAACATCAACTGAAGTCACATCCAATGAGACGACAACCGAAA
ATATAATCGCTGGGATGGTTCCCAGGGACGAGCTTGAATGTGTCGCATTT
TGTCTTATTCTTCGAAAAACATCAAACCGAAAGACTGCTCAAGCATGTAA
ATACGAATGTTCACATAGATTCGCTCCCAGTCCCAAACCAACAGATTTTG
ACAAGTGTGAATCAGAATGTAAGGTAGAAAGAAAAAGGTGTGAAAACCCT
GGCCCAGAAACTGAATTATTGGTCGATTGTGAAGAGGAAGATAGATTATG
TAAAAGAACTTGTTTGGTACATTTCAAAGGAGATGGCTTTGAGAACAAAT
TCACCACGAATAATCCGTTGACCACAGATGAACACGAAAGTACAACTCCA
GGAGATGAGTATGTGCAAACAACTGACGAATTATGTTTTACCGGATGTAA
AGTCAAACAACGTATTTGCTTCACAAACATCAAAACTGAAGATTTCCAAG
AAACTCTCCTGTGTATGCAAGCTTGTTCAGACACTTGCTTGCATCATTGT
AAAGCGAAAAAAATTCCAGCCGTGAAGCCGACTACAAAAAGAATCCTTAG
TACGTGTTTGACAGAGTGTAAAAAGGAGCAGGTTTCTTGTCTAGAAGTTG
AATATCGCGACCCCATTATTTGTGTAAGAGCTTCAAATCTCTGCAAAGAA
AAATGTAACCGAGCGACTACCATGTTGAAACGAACTAGTTCCGTAGTCAG
GGGACTCGCGTTACAATCTTCCGGCAAGCTTCCACGATTAAAAATCTCTA
CCTCCGTATCTGACACCCGACAAGAGAAGCTAGGATCACTGCGATCGCTC
AACCTTGTTGAATGGTTAACAAAAAGAAAAGGGCGGTCCTCGAAATCACC
AATAAGTACAGCTACCtcagaaaatgaagaaagatcATCCACAGCAACAC
CACGCCTTTCAACGCCCTCATTCCACCAAAGTGTAGATTCAAACCCACTA
GAAGAACAGTGCCTCGAACAATGCAGAAGAGAAAAGAGAATTTGTTGGGT
AGATTGGGAAGATTCTACCCTTTGTTTCCAACTCTTCAACTTGTGCAATG
GGGATTgtaactttttgtgttggcgGGGGGTAGAATTTAAGAATGAGGGG
TACTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010892-exon-sc0000118-1491911889:274951..274990 | TCONS_00010892-exon-sc0000118-1491911889:274951..274990 | Clytia hemisphaerica | exon |
| TCONS_00010892-exon-sc0000118-1510915933:274951..274990 | TCONS_00010892-exon-sc0000118-1510915933:274951..274990 | Clytia hemisphaerica | exon |
| TCONS_00010892-exon-sc0000118-1575043694:274951..274990 | TCONS_00010892-exon-sc0000118-1575043694:274951..274990 | Clytia hemisphaerica | exon |
| TCONS_00010892-exon-sc0000118-1491911889:275436..277167 | TCONS_00010892-exon-sc0000118-1491911889:275436..277167 | Clytia hemisphaerica | exon |
| TCONS_00010892-exon-sc0000118-1510915933:275436..277167 | TCONS_00010892-exon-sc0000118-1510915933:275436..277167 | Clytia hemisphaerica | exon |
| TCONS_00010892-exon-sc0000118-1575043694:275436..277167 | TCONS_00010892-exon-sc0000118-1575043694:275436..277167 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000118 | supercontig | sc0000118:274951..277167 + |
Blast
The following BLAST results are available for this feature:
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