TCONS_00010891 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010891
Unique NameTCONS_00010891
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length973

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010891 ID=TCONS_00010891|Name=TCONS_00010891|organism=Clytia hemisphaerica|type=transcript|length=973bp
AAAGCACGCGTGGTAATAAGGTTAAAATGATGCTGAAAAGCggTGCATTT
TTACTGGTATTCTTCGTTCTGCTGACTCAGCACATTACGTCATCAGCCAA
CATCAACAAATGTATAAAAAGGTGCAATGACGCTCAAGTAAAATGTACCA
CTGGTCtctttgaagatgaaaatgagaGAAATTCGAAATGTTGGAATGCT
TTCTGTAAATGTAAAGACGAATGTCCTAAAGTGTTTGATCAAATTCCGAC
ACCGACGCCGACGCCGTCAACGACACTAAGAAGACTCCCGCCTATGTTCA
AATGGTACGATATTAGAAACAGTAGTCCGTTCAGTTTTTGGGGTAAATCA
TTGAAACGAAACAATCCTTGTCGAAAGAAATGTAGCGCAAATCAAGATCA
ATGTCTAGCCTTCTCACAATCATTCGGTGATCGCATGTCTTGTTTTCGAA
GGAGAAGATTTTGTTTCAGAAAATGTAAAATCCcaaattatatcaaaagt
tgTGATATCATAAATCTCATAACAGGTCGCCCATTTTGCAAGTATCCCGG
CTCTAGGGGCTAATGGGATGCAGAGAATGACgaattgaaaagttgaaaag
gtacaattttgaaaacattgaatatttttattaagCTTTTGAATGAGGCG
CTGGCTGGGATTGACTAAAAATAATGAATCTTGAAAGAAAATACGATATT
CAAAACATCGGAGtccagttttttttcaaatagtcttgttacagtggagt
ctctttaaatCGAACCTCgataattcgaatgtctccttaattcgaacaag
aTTTCTGGGCTGGAAGTTTGAAATGCCGTATAAACCATACTCCTATcaat
gttcgagttatggagactccactaatatttttgttaataaaTTTGACAGA
CATGGAaaccaatacaccttttcgaccgtagccaccaattgccacgcggg
catttttttgtccactttatccc
Run BLAST on NCBI

protein sequence of TCONS_00010891-protein

>TCONS_00010891-protein ID=TCONS_00010891-protein|Name=TCONS_00010891-protein|organism=Clytia hemisphaerica|type=polypeptide|length=186bp
STRGNKVKMMLKSGAFLLVFFVLLTQHITSSANINKCIKRCNDAQVKCTT
GLFEDENERNSKCWNAFCKCKDECPKVFDQIPTPTPTPSTTLRRLPPMFK
WYDIRNSSPFSFWGKSLKRNNPCRKKCSANQDQCLAFSQSFGDRMSCFRR
RRFCFRKCKIPNYIKSCDIINLITGRPFCKYPGSRG
Run BLAST on NCBI

transcript from alignment at sc0000118:266405..267749+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010891 ID=TCONS_00010891|Name=TCONS_00010891|organism=Clytia hemisphaerica|type=transcript|length=1345bp|location=Sequence derived from alignment at sc0000118:266405..267749+ (Clytia hemisphaerica)
AAAGCACGCGTGGTAATAAGGTTAAAATGATGCTGAAAAGCgggtaaaaa taatttttttcattttacatcTAGAGTTTTTTTGCGAGATTTTAGTAGTA GGTATTATAATCATAGAGGTCGTATAATTAAGGATGTAATAGCCATGACA TTCTTTTAATTTGATTAAGGTATCATCTTTGCAAAGGGAATAGGGACATT TTTAgcaaaaacatcgatttttgaaggttaaaatgttcttaagatgttct tattttcactgctttgtgagtatttttcttAGAGTCCGTAGGTACTTGGG CAAAAAGGGGCACAGGGGTGTGATCCCGTcagtcggcaagggtagtaccc cggAACGTGTACCTACTACAAAGTTTGAAAtagaaataagaaattttctt tattgTTTTATATAGTGCATTTTTACTGGTATTCTTCGTTCTGCTGACTC AGCACATTACGTCATCAGCCAACATCAACAAATGTATAAAAAGGTGCAAT GACGCTCAAGTAAAATGTACCACTGGTCtctttgaagatgaaaatgagaG AAATTCGAAATGTTGGAATGCTTTCTGTAAATGTAAAGACGAATGTCCTA AAGTGTTTGATCAAATTCCGACACCGACGCCGACGCCGTCAACGACACTA AGAAGACTCCCGCCTATGTTCAAATGGTACGATATTAGAAACAGTAGTCC GTTCAGTTTTTGGGGTAAATCATTGAAACGAAACAATCCTTGTCGAAAGA AATGTAGCGCAAATCAAGATCAATGTCTAGCCTTCTCACAATCATTCGGT GATCGCATGTCTTGTTTTCGAAGGAGAAGATTTTGTTTCAGAAAATGTAA AATCCcaaattatatcaaaagttgTGATATCATAAATCTCATAACAGGTC GCCCATTTTGCAAGTATCCCGGCTCTAGGGGCTAATGGGATGCAGAGAAT GACgaattgaaaagttgaaaaggtacaattttgaaaacattgaatatttt tattaagCTTTTGAATGAGGCGCTGGCTGGGATTGACTAAAAATAATGAA TCTTGAAAGAAAATACGATATTCAAAACATCGGAGtccagttttttttca aatagtcttgttacagtggagtctctttaaatCGAACCTCgataattcga atgtctccttaattcgaacaagaTTTCTGGGCTGGAAGTTTGAAATGCCG TATAAACCATACTCCTATcaatgttcgagttatggagactccactaatat ttttgttaataaaTTTGACAGACATGGAaaccaatacaccttttcgaccg tagccaccaattgccacgcgggcatttttttgtccactttatccc

Coding sequence (CDS) from alignment at sc0000118:266405..267749+

>TCONS_00010891 ID=TCONS_00010891|Name=TCONS_00010891|organism=Clytia hemisphaerica|type=CDS|length=1122bp|location=Sequence derived from alignment at sc0000118:266405..267749+ (Clytia hemisphaerica)
AGCACGCGTGGTAATAAGGTTAAAATGATGCTGAAAAGCggTGCATTTTT
ACTGGTATTCTTCGTTCTGCTGACTCAGCACATTACGTCATCAGCCAACA
TCAACAAATGTATAAAAAGGTGCAATGACGCTCAAGTAAAATGTACCACT
GGTCtctttgaagatgaaaatgagaGAAATTCGAAATGTTGGAATGCTTT
CTGTAAATGTAAAGACGAATGTCCTAAAGTGTTTGATCAAATTCCGACAC
CGACGCCGACGCCGTCAACGACACTAAGAAGACTCCCGCCTATGTTCAAA
TGGTACGATATTAGAAACAGTAGTCCGTTCAGTTTTTGGGGTAAATCATT
GAAACGAAACAATCCTTGTCGAAAGAAATGTAGCGCAAATCAAGATCAAT
GTCTAGCCTTCTCACAATCATTCGGTGATCGCATGTCTTGTTTTCGAAGG
AGAAGATTTTGTTTCAGAAAATGTAAAATCCcaaattatatcaaaagttg
TGATATCATAAATCTCATAACAGGTCGCCCATTTTGCAAGTATCCCGGCT
CTAGGGGCTAAAGCACGCGTGGTAATAAGGTTAAAATGATGCTGAAAAGC
ggTGCATTTTTACTGGTATTCTTCGTTCTGCTGACTCAGCACATTACGTC
ATCAGCCAACATCAACAAATGTATAAAAAGGTGCAATGACGCTCAAGTAA
AATGTACCACTGGTCtctttgaagatgaaaatgagaGAAATTCGAAATGT
TGGAATGCTTTCTGTAAATGTAAAGACGAATGTCCTAAAGTGTTTGATCA
AATTCCGACACCGACGCCGACGCCGTCAACGACACTAAGAAGACTCCCGC
CTATGTTCAAATGGTACGATATTAGAAACAGTAGTCCGTTCAGTTTTTGG
GGTAAATCATTGAAACGAAACAATCCTTGTCGAAAGAAATGTAGCGCAAA
TCAAGATCAATGTCTAGCCTTCTCACAATCATTCGGTGATCGCATGTCTT
GTTTTCGAAGGAGAAGATTTTGTTTCAGAAAATGTAAAATCCcaaattat
atcaaaagttgTGATATCATAAATCTCATAACAGGTCGCCCATTTTGCAA
GTATCCCGGCTCTAGGGGCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006116XLOC_006116Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010891-proteinTCONS_00010891-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010891-exon-sc0000118-1491911889:266405..266447TCONS_00010891-exon-sc0000118-1491911889:266405..266447Clytia hemisphaericaexon
TCONS_00010891-exon-sc0000118-1510915933:266405..266447TCONS_00010891-exon-sc0000118-1510915933:266405..266447Clytia hemisphaericaexon
TCONS_00010891-exon-sc0000118-1575043694:266405..266447TCONS_00010891-exon-sc0000118-1575043694:266405..266447Clytia hemisphaericaexon
TCONS_00010891-exon-sc0000118-1491911889:266820..267749TCONS_00010891-exon-sc0000118-1491911889:266820..267749Clytia hemisphaericaexon
TCONS_00010891-exon-sc0000118-1510915933:266820..267749TCONS_00010891-exon-sc0000118-1510915933:266820..267749Clytia hemisphaericaexon
TCONS_00010891-exon-sc0000118-1575043694:266820..267749TCONS_00010891-exon-sc0000118-1575043694:266820..267749Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000118supercontigsc0000118:266405..267749 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.75988 1.53963 0.525782 0.518723 1.31508 1.78147 0.181061 0.727024 0 0.339294 0.188187 0 0.401488 0 5.0891 6.36689 1.35954 1.75079 0 0.0516552 0.134693 0 2.13315 1.79338 0 0.0889927 0.0636741 0.339774 0.515413 1.41783
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010891 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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