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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010891 ID=TCONS_00010891|Name=TCONS_00010891|organism=Clytia hemisphaerica|type=transcript|length=973bp
AAAGCACGCGTGGTAATAAGGTTAAAATGATGCTGAAAAGCggTGCATTT
TTACTGGTATTCTTCGTTCTGCTGACTCAGCACATTACGTCATCAGCCAA
CATCAACAAATGTATAAAAAGGTGCAATGACGCTCAAGTAAAATGTACCA
CTGGTCtctttgaagatgaaaatgagaGAAATTCGAAATGTTGGAATGCT
TTCTGTAAATGTAAAGACGAATGTCCTAAAGTGTTTGATCAAATTCCGAC
ACCGACGCCGACGCCGTCAACGACACTAAGAAGACTCCCGCCTATGTTCA
AATGGTACGATATTAGAAACAGTAGTCCGTTCAGTTTTTGGGGTAAATCA
TTGAAACGAAACAATCCTTGTCGAAAGAAATGTAGCGCAAATCAAGATCA
ATGTCTAGCCTTCTCACAATCATTCGGTGATCGCATGTCTTGTTTTCGAA
GGAGAAGATTTTGTTTCAGAAAATGTAAAATCCcaaattatatcaaaagt
tgTGATATCATAAATCTCATAACAGGTCGCCCATTTTGCAAGTATCCCGG
CTCTAGGGGCTAATGGGATGCAGAGAATGACgaattgaaaagttgaaaag
gtacaattttgaaaacattgaatatttttattaagCTTTTGAATGAGGCG
CTGGCTGGGATTGACTAAAAATAATGAATCTTGAAAGAAAATACGATATT
CAAAACATCGGAGtccagttttttttcaaatagtcttgttacagtggagt
ctctttaaatCGAACCTCgataattcgaatgtctccttaattcgaacaag
aTTTCTGGGCTGGAAGTTTGAAATGCCGTATAAACCATACTCCTATcaat
gttcgagttatggagactccactaatatttttgttaataaaTTTGACAGA
CATGGAaaccaatacaccttttcgaccgtagccaccaattgccacgcggg
catttttttgtccactttatccc Run BLAST on NCBI protein sequence of TCONS_00010891-protein >TCONS_00010891-protein ID=TCONS_00010891-protein|Name=TCONS_00010891-protein|organism=Clytia hemisphaerica|type=polypeptide|length=186bp
STRGNKVKMMLKSGAFLLVFFVLLTQHITSSANINKCIKRCNDAQVKCTT
GLFEDENERNSKCWNAFCKCKDECPKVFDQIPTPTPTPSTTLRRLPPMFK
WYDIRNSSPFSFWGKSLKRNNPCRKKCSANQDQCLAFSQSFGDRMSCFRR
RRFCFRKCKIPNYIKSCDIINLITGRPFCKYPGSRG Run BLAST on NCBI transcript from alignment at sc0000118:266405..267749+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010891 ID=TCONS_00010891|Name=TCONS_00010891|organism=Clytia hemisphaerica|type=transcript|length=1345bp|location=Sequence derived from alignment at sc0000118:266405..267749+ (Clytia hemisphaerica)
AAAGCACGCGTGGTAATAAGGTTAAAATGATGCTGAAAAGCgggtaaaaa
taatttttttcattttacatcTAGAGTTTTTTTGCGAGATTTTAGTAGTA
GGTATTATAATCATAGAGGTCGTATAATTAAGGATGTAATAGCCATGACA
TTCTTTTAATTTGATTAAGGTATCATCTTTGCAAAGGGAATAGGGACATT
TTTAgcaaaaacatcgatttttgaaggttaaaatgttcttaagatgttct
tattttcactgctttgtgagtatttttcttAGAGTCCGTAGGTACTTGGG
CAAAAAGGGGCACAGGGGTGTGATCCCGTcagtcggcaagggtagtaccc
cggAACGTGTACCTACTACAAAGTTTGAAAtagaaataagaaattttctt
tattgTTTTATATAGTGCATTTTTACTGGTATTCTTCGTTCTGCTGACTC
AGCACATTACGTCATCAGCCAACATCAACAAATGTATAAAAAGGTGCAAT
GACGCTCAAGTAAAATGTACCACTGGTCtctttgaagatgaaaatgagaG
AAATTCGAAATGTTGGAATGCTTTCTGTAAATGTAAAGACGAATGTCCTA
AAGTGTTTGATCAAATTCCGACACCGACGCCGACGCCGTCAACGACACTA
AGAAGACTCCCGCCTATGTTCAAATGGTACGATATTAGAAACAGTAGTCC
GTTCAGTTTTTGGGGTAAATCATTGAAACGAAACAATCCTTGTCGAAAGA
AATGTAGCGCAAATCAAGATCAATGTCTAGCCTTCTCACAATCATTCGGT
GATCGCATGTCTTGTTTTCGAAGGAGAAGATTTTGTTTCAGAAAATGTAA
AATCCcaaattatatcaaaagttgTGATATCATAAATCTCATAACAGGTC
GCCCATTTTGCAAGTATCCCGGCTCTAGGGGCTAATGGGATGCAGAGAAT
GACgaattgaaaagttgaaaaggtacaattttgaaaacattgaatatttt
tattaagCTTTTGAATGAGGCGCTGGCTGGGATTGACTAAAAATAATGAA
TCTTGAAAGAAAATACGATATTCAAAACATCGGAGtccagttttttttca
aatagtcttgttacagtggagtctctttaaatCGAACCTCgataattcga
atgtctccttaattcgaacaagaTTTCTGGGCTGGAAGTTTGAAATGCCG
TATAAACCATACTCCTATcaatgttcgagttatggagactccactaatat
ttttgttaataaaTTTGACAGACATGGAaaccaatacaccttttcgaccg
tagccaccaattgccacgcgggcatttttttgtccactttatccc Coding sequence (CDS) from alignment at sc0000118:266405..267749+ >TCONS_00010891 ID=TCONS_00010891|Name=TCONS_00010891|organism=Clytia hemisphaerica|type=CDS|length=1122bp|location=Sequence derived from alignment at sc0000118:266405..267749+ (Clytia hemisphaerica)
AGCACGCGTGGTAATAAGGTTAAAATGATGCTGAAAAGCggTGCATTTTT
ACTGGTATTCTTCGTTCTGCTGACTCAGCACATTACGTCATCAGCCAACA
TCAACAAATGTATAAAAAGGTGCAATGACGCTCAAGTAAAATGTACCACT
GGTCtctttgaagatgaaaatgagaGAAATTCGAAATGTTGGAATGCTTT
CTGTAAATGTAAAGACGAATGTCCTAAAGTGTTTGATCAAATTCCGACAC
CGACGCCGACGCCGTCAACGACACTAAGAAGACTCCCGCCTATGTTCAAA
TGGTACGATATTAGAAACAGTAGTCCGTTCAGTTTTTGGGGTAAATCATT
GAAACGAAACAATCCTTGTCGAAAGAAATGTAGCGCAAATCAAGATCAAT
GTCTAGCCTTCTCACAATCATTCGGTGATCGCATGTCTTGTTTTCGAAGG
AGAAGATTTTGTTTCAGAAAATGTAAAATCCcaaattatatcaaaagttg
TGATATCATAAATCTCATAACAGGTCGCCCATTTTGCAAGTATCCCGGCT
CTAGGGGCTAAAGCACGCGTGGTAATAAGGTTAAAATGATGCTGAAAAGC
ggTGCATTTTTACTGGTATTCTTCGTTCTGCTGACTCAGCACATTACGTC
ATCAGCCAACATCAACAAATGTATAAAAAGGTGCAATGACGCTCAAGTAA
AATGTACCACTGGTCtctttgaagatgaaaatgagaGAAATTCGAAATGT
TGGAATGCTTTCTGTAAATGTAAAGACGAATGTCCTAAAGTGTTTGATCA
AATTCCGACACCGACGCCGACGCCGTCAACGACACTAAGAAGACTCCCGC
CTATGTTCAAATGGTACGATATTAGAAACAGTAGTCCGTTCAGTTTTTGG
GGTAAATCATTGAAACGAAACAATCCTTGTCGAAAGAAATGTAGCGCAAA
TCAAGATCAATGTCTAGCCTTCTCACAATCATTCGGTGATCGCATGTCTT
GTTTTCGAAGGAGAAGATTTTGTTTCAGAAAATGTAAAATCCcaaattat
atcaaaagttgTGATATCATAAATCTCATAACAGGTCGCCCATTTTGCAA
GTATCCCGGCTCTAGGGGCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010891-exon-sc0000118-1491911889:266405..266447 | TCONS_00010891-exon-sc0000118-1491911889:266405..266447 | Clytia hemisphaerica | exon |
| TCONS_00010891-exon-sc0000118-1510915933:266405..266447 | TCONS_00010891-exon-sc0000118-1510915933:266405..266447 | Clytia hemisphaerica | exon |
| TCONS_00010891-exon-sc0000118-1575043694:266405..266447 | TCONS_00010891-exon-sc0000118-1575043694:266405..266447 | Clytia hemisphaerica | exon |
| TCONS_00010891-exon-sc0000118-1491911889:266820..267749 | TCONS_00010891-exon-sc0000118-1491911889:266820..267749 | Clytia hemisphaerica | exon |
| TCONS_00010891-exon-sc0000118-1510915933:266820..267749 | TCONS_00010891-exon-sc0000118-1510915933:266820..267749 | Clytia hemisphaerica | exon |
| TCONS_00010891-exon-sc0000118-1575043694:266820..267749 | TCONS_00010891-exon-sc0000118-1575043694:266820..267749 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000118 | supercontig | sc0000118:266405..267749 + |
Blast
The following BLAST results are available for this feature:
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