TCONS_00010890 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010890
Unique NameTCONS_00010890
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1279

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010890 ID=TCONS_00010890|Name=TCONS_00010890|organism=Clytia hemisphaerica|type=transcript|length=1279bp
TGTTGTTGCTTGGTAGGAGATTATTTTGTTGACAAATATGACGGAATTTG
AGGGGTAAACACCTATATAAGAGGAGTTGTGTCAAGGGTTTTGCAAAATA
TAGAACTTGTTTAGTGGTTTTTAACAGAGATTGGATATATACGTCGAGCT
TTGTGATTGTACTTTAGAATGGCTTGNTTGTACAACTTGTTTAGTGGTTT
TTAATAGAGATTGGATATATACGTCGAGCTTTGTGATTGTACTTTAGAAT
GGCTTCTTTCATGAGATTCTGCCAGTTTATCTTATTGATGGCAATCGCCG
GACCTTTCGTTTCTGCTTTCCCATCCAGCGGGCATCATTACGAGAAACCG
GTCATCGATCGGACCTTTCCGTGCTTCAAAGAATGCGGAACATATTACGA
ACAATGCGTTATAAAATATCGCGCTGCTTTCAATCCCGTATATCGAGCTA
AGAAGCTGGACGAATGCGTCCAGAAAAGNTTACGAACAATGCGTCATAAA
ATATCGCGCTGCTTTCAATCCCGTATATAGAGCTAAGAAGCTGGACGAAT
GCGTCCAGAAAAGGACTTTCTGTGAAGCTTTAAAATGTAAAGGCTACCTG
TGCTGTATGCGAAAGTGTGAAATAGCCGATAATCAATGTATGGAGACTTC
GCACAAGAGTAACCAGCAAATGATTTTATGTATGCAACAAAATTCGCTGT
GTCAGCATAGTTGTACTGCACGAGAAATGGACCGTGAAAATGACCCACAT
CAGGTTTATCAAACGTAACATTGCAATGGCCATATGGATCCTCAGTGGTG
GTACAAATACGAAGAGTTGTAAAAGCCCTTGATTGATCTCGTGTTTTGCA
TGATTTTGACCTTTAATTCAAACATAAGACATGATCGAAATTGAAATAGT
GACTAATATGACCAATATCTATTCCTTGGCTAAGGTGTTGGATACTTCTA
TTGGAGTCATGATATGGACCAGTTTTCGAGAAGAagaaagtttgaatttt
gaCAAAGGCGTCACTGACAAAATGACCAGGCAAATGTCATTTTAAAGAGT
TATGGACTCTTTGAAAAAcgtcgaaaaaaagttttccaggTGTTTTTGCA
GCAAAGACGTTTGCAATCTATTAAAGATATACATTGACGTTTTATATACG
CAATATTGAACTATATTTGAAACTTTTGACCTAAAAGATGCTCCAAATAG
CTTTTGAAAACAGGATAAGACACTGTGTTATAAGAAACATTATGTGTTTG
AAGATAAATTGACGATAAcaagatatttt
Run BLAST on NCBI

transcript from alignment at sc0000118:259454..261084+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010890 ID=TCONS_00010890|Name=TCONS_00010890|organism=Clytia hemisphaerica|type=transcript|length=1631bp|location=Sequence derived from alignment at sc0000118:259454..261084+ (Clytia hemisphaerica)
TGTTGTTGCTTGGTAGGAGATTATTTTGTTGACAAATATGACGGAATTTG
AGGGGTAAACACCTATATAAGAGGAGTTGTGTCAAGGGTTTTGCAAAATA
TAGAACTTGTTTAGTGGTTTTTAACAGAGATTGGATATATACGTCGAGCT
TTGTGATTGTACTTTAGAATGGCTTGNTTGTACAACTTGTTTAGTGGTTT
TTAATAGAGATTGGATATATACGTCGAGCTTTGTGATTGTACTTTAGAAT
GGCTTCTTTCATGAGGTAAATATATGCgtaaattttaaacaatatCTTAT
GAGATAAATTCAGACTTTTACAAAGTCTGcatcaactgtttttttttatt
gcaacAGAACCAAATGATTATACAACTTATAGTTTCACGAATTTCGGTAC
AGTGACTCTCTCTAGTGAACCAAATCATTGCTCACCTCTGAGCTGCTTGA
AAGTAGTTTGAAATGCTCTCTACAATTCGAATTTTCCCTCCAATTTGTCC
AGCTTCAGAGTAGGCGTATGTTTAAAGTTTTGACTGTACAAAGAGCACAA
AGAGTGGTAGGAACCTAATTTTGTCTTGAAGAAATTGTAAAGATTTCTCG
TGTATTTCCTTTTATAGATTCTGCCAGTTTATCTTATTGATGGCAATCGC
CGGACCTTTCGTTTCTGCTTTCCCATCCAGCGGGCATCATTACGAGAAAC
CGGTCATCGATCGGACCTTTCCGTGCTTCAAAGAATGCGGAACATATTAC
GAACAATGCGTTATAAAATATCGCGCTGCTTTCAATCCCGTATATCGAGC
TAAGAAGCTGGACGAATGCGTCCAGAAAAGNTTACGAACAATGCGTCATA
AAATATCGCGCTGCTTTCAATCCCGTATATAGAGCTAAGAAGCTGGACGA
ATGCGTCCAGAAAAGGACTTTCTGTGAAGCTTTAAAATGTAAAGGCTACC
TGTGCTGTATGCGAAAGTGTGAAATAGCCGATAATCAATGTATGGAGACT
TCGCACAAGAGTAACCAGCAAATGATTTTATGTATGCAACAAAATTCGCT
GTGTCAGCATAGTTGTACTGCACGAGAAATGGACCGTGAAAATGACCCAC
ATCAGGTTTATCAAACGTAACATTGCAATGGCCATATGGATCCTCAGTGG
TGGTACAAATACGAAGAGTTGTAAAAGCCCTTGATTGATCTCGTGTTTTG
CATGATTTTGACCTTTAATTCAAACATAAGACATGATCGAAATTGAAATA
GTGACTAATATGACCAATATCTATTCCTTGGCTAAGGTGTTGGATACTTC
TATTGGAGTCATGATATGGACCAGTTTTCGAGAAGAagaaagtttgaatt
ttgaCAAAGGCGTCACTGACAAAATGACCAGGCAAATGTCATTTTAAAGA
GTTATGGACTCTTTGAAAAAcgtcgaaaaaaagttttccaggTGTTTTTG
CAGCAAAGACGTTTGCAATCTATTAAAGATATACATTGACGTTTTATATA
CGCAATATTGAACTATATTTGAAACTTTTGACCTAAAAGATGCTCCAAAT
AGCTTTTGAAAACAGGATAAGACACTGTGTTATAAGAAACATTATGTGTT
TGAAGATAAATTGACGATAAcaagatatttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006115XLOC_006115Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010890-exon-sc0000118-1491911889:259454..259718TCONS_00010890-exon-sc0000118-1491911889:259454..259718Clytia hemisphaericaexon
TCONS_00010890-exon-sc0000118-1510915933:259454..259718TCONS_00010890-exon-sc0000118-1510915933:259454..259718Clytia hemisphaericaexon
TCONS_00010890-exon-sc0000118-1575043694:259454..259718TCONS_00010890-exon-sc0000118-1575043694:259454..259718Clytia hemisphaericaexon
TCONS_00010890-exon-sc0000118-1491911889:260071..261084TCONS_00010890-exon-sc0000118-1491911889:260071..261084Clytia hemisphaericaexon
TCONS_00010890-exon-sc0000118-1510915933:260071..261084TCONS_00010890-exon-sc0000118-1510915933:260071..261084Clytia hemisphaericaexon
TCONS_00010890-exon-sc0000118-1575043694:260071..261084TCONS_00010890-exon-sc0000118-1575043694:260071..261084Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000118supercontigsc0000118:259454..261084 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.71542	0.494668	2.08878	1.9954	0.838217	0.484525	1.24291	0.684549	9.68062	5.95419	2.22165	5.15222	0.77161	0.943949	13.9928	12.3926	0.480868	0.422191	0.114051	0.449317	0.0711979	0.190627	0	0	0.0368014	0.0374948
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010890 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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