|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010888 ID=TCONS_00010888|Name=TCONS_00010888|organism=Clytia hemisphaerica|type=transcript|length=1969bp
gaaaaatcaataaaaatattaaaattaagattttcaatGTTATCAACCTT
ACAGAGAAGGTCAATTAACACCTTCCACAGTACAAGATGTTGTTGCTCTC
TCCTGCAATCACAAAACTATGGATATCCTAAACAACCAATCAGATCTCAC
ATATCTACTTCTCAGCCAATCAAAAGCCGCCACTCaaattttcaaccaat
aagaaaTCAGCTTTCAGTTTATCAACCAATTAGCTTCCAGCTTAGAACCA
GTTCATTGAGTGTTTCTACAACATGGTCGTCAATCAGGTGTTACAGTCAA
AGCCTGAATGATGGGAAAGATGATCAGAACGTTCAGAAACAAAGGCCAAA
GAGAATTACCACGTTTCAAAAGGTCCGATACATGGTGGATATCTTTTGGG
CAGGATGCAAAGCCTTATTTAGAGATGTACGTTTGGCATTGAAAACGAGG
CGGAAACTTGGCTTGTATCACGTTCGTGATTATTCAAGATTGACCAGAGA
AGAATTGAGGCATCTCAGACAGACAAGGCAAGATGTAGTGAAGACATTCC
CAGTTGCGTTATTGTTCATGGTACCTTTCATTGGCTACACTGCTCCTATA
CTCGCCTATTTCTACCCTCGGCAGCTTTTGTCGCAACAATTCTGGCATCC
TGACCAAAAGAAAGAGTTTGTTTTGGAAGAATACGAGAAGAGAAGTCAAT
ACTATTTACCGTTGATCAAAGAGTGTGGCATCACTGCTAAAGAAATTGTC
AATAAAGACTTGTTGAATTTCTGTCTCAAGACAATAGACGGTTCATACCC
TGAGAACGAAGAATTATTGCACTTCGAAAATGTATTCTCGCAGCACGAAG
ATTTTTCCTTACAAAAAATGCCACGATATCATCTTGTGAAGATTTGCAAG
TGTTGGTTGATTCCGACCGGCTGGTACCTACCACGCTGGTATCTGATCAA
TGTTTTGAATAAGCGGATCCTCAAATTACACGAGGATGATGTCCTCATTT
TGAGGGATGGGATTGATACTCTCACACCTGAGTGTATTGAACAGGCAGTT
CATGTTCGAGGCTTAGACGAAGCTTCGTTGAATGATGAATCGAAGAAGTT
TTGGTTGAAAGATTGGATCGAACTTTCCTCTAACGTTAAAGGCAAAGATA
TCTCTTTCTTGGCACACAGTGCGGTCTTCAAAGCGGCCAACTTTGAAATG
TTGCAACAAAATGGTAGCAAAGTAGTGGATCAAGTGGAATCACGTTGAAG
TCAAAGAGTTGTGTGTTTTGATGTCGTGCAGGTATCAAATTGGATGTGTC
TGTCCATGAATAGAAGTTGTAGTCGACTGATTCTATTGACATATCAAGAA
AATACAGAACAGGGCAATAAAGCAGGAACAAACCTTTAGTCTGtatgaaa
aatttcatcaagcTATACTTGCTCTTAGACGATGTTGGTAAAGGGAATGA
CAGAGCTTATGGTGTTGTGTTTGTGAACTAGATGGTAAAGAAGATGTTCC
TAAAAAACGATGCTTCGACTTTAACCCTAGTTGGCTCTGTACCGAGAAAC
GCTGATTCTTGATATCATTGCATTCATATTGATATTCATGCACTTCATAC
CTGGATATactaatgtttaaaaatgttgATACCTATAATGCTCGTCCAAA
AGAAGGTAAAGAAGGAACTACTTTTCTTTGTTTCATGGTTGAGAATGTTG
TTTTTACTTAGAGGAAAGGTACTAAGAGCTCCCATGCTATGAAGTGAAGA
TTTGTTTCAGGTTGGCAATGAAGGAACTAAGCCGAACACTTTCAGTTTAT
GCTACCATTTTATCTATAATGAGACCCCCAGctgttttcgtgatggcgtg
atttgGCGTTTTTCAAGTTtgtgatttcgtgatttaagattttaaagtgc
gtGATTGCTGCGTGATCGGAGGAACCAACGTGATTAACGTGATCGTTTAA
CTCGGAAATTTAACTCGTg Run BLAST on NCBI transcript from alignment at sc0000118:217821..235497+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010888 ID=TCONS_00010888|Name=TCONS_00010888|organism=Clytia hemisphaerica|type=transcript|length=17677bp|location=Sequence derived from alignment at sc0000118:217821..235497+ (Clytia hemisphaerica)
gaaaaatcaataaaaatattaaaattaagattttcaatGTTATCAACCTT
ACAGAGAAGGTCAATTAACACCTTCCACAGTACAAGATGTTGTTGCTCTC
TCCTGCAATCACAAAACTATGGATATCCTAAACAACCAATCAGATCTCAC
ATATCTACTTCTCAGCCAATCAAAAGCCGCCACTCaaattttcaaccaat
aagaaaTCAGCTTTCAGTTTATCAACCAATTAGCTTCCAGCTTAGAACCA
GTTCATTGAGTGTTTCTACAACATGGTCGTCAATCAGGTGTTACAGTCAA
AGCCTGAATGATGGGAAAGATGATCAGAACGTTCAGAAACAAAGGCCAAA
GAGAATTACCACGTTTCAAAAGGTTTTTTAATTtccttttaattttactt
taaaaggtCTCTTTGTAATCAATTTTGGGAATAGTGGTTTATAATACGCC
GGGTAATTCACATAAAATTGCACTCGAGAGACATAAAGAAGATTGTAATC
GAATCACTTACAATTATTATTCCATACGGGAAAATTGACGCTAAATATAT
GTGGACAATGAAAGAATTGATGTAACTCAgagaaaatttatcttttttta
aagatgTTTTGGGAAAATCTCAGTATTGTATAGAAATGTGTCTAATaagt
gcttttttaaacacACCCAATATAATACCTCGATATGGCTAAGGGATACC
TTAGCCTTTTTTGACGAAGANGTTTTTAGTGACATAATGCGTGGTGGTAA
TCATTCATATTGATTAAGACAACCCTTTGTTTGGTTTGGGTATTACTACA
TCGTTTTTTAAATTCTGGATCAGTTTGATACTTTAAGAGTCTTCGTAGAA
ACGAGGATCATCAATTTCTAGAACGTTAAAAATGAAGGCTCGAATAGAGT
TTTTAGCCTTTTCAATCAATTGAGGATTATGTTTAAGTGTGTGGGATTTG
TAGATTTGCTGCCAGACATCCTCAGCAAGAGCaaacatttcaatttcttt
gGGTCGAGATGCCAATCCATGATTCAAGCCCAAACAAACAAGCGAAGAAA
GATTGGTGATAATAGCATTCGGGTTGTTCGTGATAGgatcataattttat
ttctttcgtCTATAAGAATTTCAAATTTGGGTGACAACTTTTTATCGATA
GGGTGAATGAAGGAATAAAATTTACGGTTAACAAAGATCGGCACAATATA
GACATAAATGTATGTTATAATAAGTGTTCAAATACGGTATGAAAATGGCC
CAACACGATGTGGTGATGAATGGTCAGACACTAAGGTAATGGAAGCAATT
GGTGCCAAACTCACTGAAGGTACTAAATTTCTAATCCCTGATTTTACACC
ATATATAGTTGAATTATagaattttttcctttgttcattagaatttttta
tttctcgcCTTTTTTTACGCATCACTGATTCTTGTAGCATTTAAAAATGT
GTTAACGCTTGTGCAGTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATTAca
agttgtattttttaatgGTGTATTCAACAATAGATTGAAATTGATTTGGA
TATTACTAAATTCTAAAGTAAGATTTTGGTCACTCTCTACTTACTGCACT
GCTCAGTAAAACTTTATTTCTCTTgaactatttttttcaaatggaaAAAT
AGGACTTTCAACTGCTTTAAACCAGCAATAGTTAATTGGTAGCTACAAAA
GTTACACCACATTCTCATTAAAtgcctttcaattttttcagaGCTGGGTG
CCAATTTTAAACATTATGAGTGTCCTGACCCGCCGAGAGTTGTATTGGAT
CGTTTAAATAAACTTGGGTTCAAATTCATGGGCATGACTGGTTGTGGTCA
ATGTGTCTTATGGACACTATTCAAGGAAGATTGAACAGAGACGCCGAGAA
AATTGAGGAAATTGCATCAAAATTGCATTGTACTTAATACTTTAGTCCAA
TGGTTATTTCTTTCATTGGTTGATAGATTGAATGATCTTGtcatgttttc
ttgaaataataatgatatcatgcgtctaaatattttttactaTTTGTAAG
GTTTATgattatttagaaaaataacaatttttttgaataacatGGCATTT
ACTGTTTTACTTCATAAAATCCTTGAAATTGAGATTAGAAATAAGCTACT
CGGCTGTCATCACTTGCTAATAACTAGTTCATTTCATCTTTCaggaaaaa
tcaataaaaatattaaaattaagattttcaatGTTATCAACCTTACAGAG
AAGGTCAATTAACACCTTCCACAGTACAAGATGTTGTTGCTCTCTCCTGC
AATCACAAAACTATGGATATCCTAAACAACCAATCAGATCTCACATATCT
ACTTCTCAGCCAATCAAAAGCCGCCACTCaaattttcaaccaataagaaa
TCAGCTTTCAGTTTATCAACCAATTAGCTTCCAGCTTAGAACCAGTTCAT
TGAGTGTTTCTACAACATGGTCGTCAATCAGGTGTTACAGTCAAAGCCTG
AATGATGGAAAAGATGATCAGAACGTTCAGAAACAAAGGCCAAAGAGAAT
TACCACGTTTCAAAAGGTTTTTTAATTtccttttaattttactttaaaag
gtCTCTTTGTAATCAATTTTGGGAATAGTGGTTTATAATACGCCGGGTAA
TTCACATAAAATTGCACTCGAGAGACATAAAGAAGATTGTAATCGAATCA
CTTACAATTATTATTCCATACGGGAAAATTGACGCTAAATATATGTGGAC
AATGAAAGAATTGATGTAACTCAgagaaaatttatctttttttaaagatg
TTTTGGGAAAATCTCAGTATTGTATAGAAATGTGTCTAATaagtgctttt
ttaaacacACCCAATATAATACCTCGATATGGCTAAGGGATACCTTAGCC
TTTTTTGACGAAGATAATTCACTATTAGTTGCAGTTGCAATTGTGTCTTT
CAGTGACTATTTATTTCATATCTGTAGATTTATCGACCCAGTTATAGACA
TTAGTCGTTGTAGTTATTGGGAGGAATATACAGCCTATCTAATCAATGGT
AaactttcaatatatttttgatttgtaGGTCCGATACATGGTGGATATCT
TTTGGGCAGGATGCAAAGCCTTATTTAGAGATGTACGTTTGGCATTGAAA
ACGAGGCGGAAACTTGGCTTGTATCACGTTCGTGATTATTCAAGATTGAC
CAGAGAAGAATTGAGGCATCTCAGACAGGTTTAAATGAATTTCTTTAATT
GACACATTGggttattccagaaatagtctgtaccccctatgttgaagagg
tgtgacgtccagggtggtatgggaataaaaaatccagggtggtccagttt
ttcagagggaaaaaatccaggggggtcCGGTTTTTTGAGTGCAAAAATCC
AGGGTGCTTACCATATGTTGAGGaggaaaatccagggtggtccagatttt
tcagaggaaaaaaatttcatggatTTTTTAATCTATTGACACTATAGAGT
TTGAATGCTTTACCCAATGTTGCGAAACTTTTCCTGTTTGTATCAAGAAT
TTATTCCGGTCTCAATAACAACGGTCTTGAAAGTAGCAGCTCGTAGAAAT
TCGAATCAAGATTTGGACCTTCCCCTCTCTCCAGATTCTTCAAATGTTCT
ACTGCAGTAGCTTCTCTCTAATTTTGATCTTCAAGGGATCATGAATTCCC
TGCGTtgtagaaagattcaaattacaAAGAGTCATTTATATATATCCCCC
AGATAATTGCCCCGGGACAATAACCCCCAGACAATCGCTCCCAGGACAAT
TACCCCCAGACAATTACCCCCAGACTATTGTCCTAGGCAATTTGATTATT
CTTGTATCTTGAATTTTATGGTTAatacttttataagaaaattcatTACA
TATTTTTAGGTTAACTCTTTATTCATGCAAATGTCACGGGGCAATTGTAA
CGGGGCAATTGTaacgggggcaattttcctgtcACCTGGGATACGCAGTG
ATGAGGTTTGGAATTTTGATTACACATTCTTACACTTTTCTTCCAATAGA
CAAGGCAAGATGTAGTGAAGACATTCCCAGTTGCGTTATTGTTCATGGTA
CCTTTCATTGGCTACACTGCTCCTATACTCGCGTAAGTATTGTCATTGGC
TTTGTCGATTACACGTTggttataagaacaaactatatgagtACGTAaag
cttcgatagccaaaatagtAAGAACAAAGaacatacagttgacgctctct
aagtccccgtcaacaagaaactctcataaacgactcTACCTTATTCGATA
AGTTCCCTTATTCGacgaaaatccaattccccttgaagatcgaattagag
agcgtcaactggaTGAACATAGACCCTAAATAATCGAATTTCTCAGGAAG
TTGTACAAAAGtacccacaaaatggtgaaattaagaacattttaagatca
tgcttaggcttaaagctcaatacgttaagaacatccgaaggctttttTTG
ACTTGGGTATAGTTTTGTTTTCGAAATGAATCTTGTCAACAAACAACAtc
cttttataagaaaaattcacttcGAGTAAACAactttgaagatgaaaaat
gacaGGAATCAAGATTCTAGGTTTACTCACTTCTCTGGTTTAATCAAAGT
ACTTTTATGGCAAAGATTTCATTAATGTTCCTTGGTTGTATGGATTTATT
TGATCTTGCCGCTAACTCAGCCAATGAGATTCAGACGATAAGATACCGGG
AGCTGGTGCTGTGAGTAAGGTATGGCGCTTCACATCAGCATTCGCCCTGC
CAGGTCTAgcctagactatgttatagtctaagacgaatcactatctaaga
aaaaagcccaaagccgaagaaaattcggaaacgggttttttttgccgaaa
agagtttacagtcggtagagttgccagtcttagactatacgattttggca
caaaatacaaaaacagcccAAATCGTACAAATTCGAGTTTTCGTATGCGA
GGCCAACTGTGTTCggtattcgaaaaaatcaaaacaaaaaaaaagaggcg
GGAGAGAAACTGAGATAAAAAAGAGAGTGTGGTTCCAAGAAATATCATAG
TTTTCTTTGGAGACCCTCTCCCTTTTATTCCCTTTATATATTCTTGGAAC
TACACTCTCTTTTCttagaaaacaaatttttatgaacagtcattttttaa
ataagtttgtaatttctttgcaacaaggatatctatctaaactttcacgt
tataaatttcttaaaaaacatcaaatcatgtaagtttgttttttcttttt
gcctgaggattatatccttatatttaccccttttatatataaaattccAT
GTAAATAAAAAGCTATAGTATCTTCTCCCCACCACCATTGCTCAAAGACA
AAGGAAACGTATAAAAATTATTGACAGTTCAAATACTTGCAATTTGTGAC
TttcctttttgataaaaaaatatacagtAGTGGATGAAAAATCTTATGAT
AACTCCAGAAGTCTGGTGTAAATTTTTCCaggtcataatctcaaattata
tcaGAGCGTCAAGTGAAAAAATGCAAGTCATGATAACATATTTCAGTAAA
ACAGTCTCAATTTATGATTAACCAGGGCATCATGgtaaaatattccaagt
cataatctcaaattgtaccaggacgtcaagtgaaaaatTGCAAGTCATGA
TAACATATTTCAGTAAAACAGTCTCAATTTATACCAGAGCATTGgtaaaa
tattccaagttataatctcaaattgtaccaggacgtcaagtaaaatattc
caagtcataatctcaaattgtaccagaacgtcaagtgaaataagttataa
tctcaaattaaaccaggacgtgaagtgaaatattgcaagtcataatctca
aattgtaccagaacgtcaagtgaaatattccaagttataatcccaaatta
aaccaggacgtgaagtgaaatattgcaagtcataatctcaaattgtacca
gaacgtcaagtgaaatattccaagttataatcccaaattaaaccacgatg
tgaagtgaaatattccaagttataatctcagattgtaccaggacgtaaag
tgaaatattgcaagtcaTAATCTCTGTTGTACCaaaacgtcaagtgaaat
attgcaagttaTAATCTCAGATTATACCAGGACGTcgtgaaatattgcaa
gtctTAATCTCAATAATAAACCAGGATgatgtgccaaatatttcatttcg
gtattgtgctctctgcaaattactgccatattttcccatgcatccaattt
ctgaatttctgattcttacctagaaaatttagaataataatcTGATAATA
TTTACAGGTACGACTAGGTAACTGAACTTCTCGACAAATGTGAAAGTTTT
CGAACAAGAAGTATATTAAAAGCAGTCTTTTAAAGCCCACAATTGACAAT
AAGTACTTTGTTTAAGTAAGTActatttttcaaagcttttcaaagttgtc
aaagaactgctaacaccagatgaaaataactttttaagagTGGAGATATG
AGGGTATTCACATATCTAATGAAACACTGCCTGTGATTCATAGGATTCGT
AAGAAATATACAAACTGACTTACCTACTTAGTTTCTCTGACTCTGTGTCT
TTTTGCTGTTGTATGTAGACttgttgaaaaatcattttaaaacagtATTC
TACAGAAGCATACTTGAGGAATAAGTACTCCCTTAAACTAAGTCATCTTG
TAgtctcaataaaacaaaaatgaaccaagaagaaaaattccataatgagc
tggattttcacagaaaaaccACAGATCCATCTTGTCCTTGTGTCTTCTTT
CCAATGACCAGCGTGTTTTTGATCGTTTGAACCAAGCTCGGCCTTTAAAC
TTAGGCGGTTTTCACCACGGAGCGACTAACCAGTCTCACTGGTTAGTCCA
AGCANGAATCTTTTTTATGCCAAAGAgttatcgtccgtttcttcgaaact
ctcccgccgatttttttccgtataccgccataacgccataccgccatttt
tccccgcctttactatcactgtaacggacgataacatcgtctaggtCTAG
CCCAACTCTTGAAAAACATTGACTCTCACTCCCGGccccgccgacagcca
ccagattaatgtacttacttactttgttttgattcttcAGCTATTTCTAC
CCTCGGCAGCTTTTGTCGCAACAATTCTGGCATCCTGACCAAAAGAAAGA
GTTTGTTTTGGAAGAATACGAGAAGAGAAGTCAATACTATTTACCGTTGA
TCAAAGAGTGTGGCATCACTGCTAAAGAAATTGTCAATAAAGACTTGTTG
AATTTCTGTCTCAAGGTTTGTGATGACGGGAGGGGGTTAAGACTATTTAC
CGTTGATCAAAGAGTGTGGCATCACTGCTAAAGAGATTNAAAGAGATTGT
CAACAAAGACTTGTTGAATTTCTGTCTCAAGGTTTGTGATGACGGGAGGG
GGTTAAGACTATTTACCGTTGATCAAAGAGTGTGGCATCACTGCTAAAGA
GATTGTCAATAAAGACTTGTTGAATTTCTGTCTTGGTTTGTGACGATTGA
CGATCCAAGAATTGACCCTGATTGACAAATAATGAATAACTTCATGGGTC
ATGATTACTCTGGAACAACtttttatcggtgacccaaaaaatatctgcaa
tctgattggctaaaaagagtacaatatatcttgtattttacatgtaaaaa
tataaattgacgaaaagatgtttttgcattgtagcggtagcagcaatcta
acgtcactttagtacaaaagtgccctgcgcttttttccaacacaaaaagt
gcattttttgggtcaccgataaaccagttatcagacctttgctcgtacaa
tatggaaatatttcactcgttccagattttttccgtatattttccttgGA
ACCTCTTCTTACAACCATTTTTCTAATTGTTGGACTAACCTGACATGTTT
TGCCAAATAACCGCTCTACTAGAGATTTTCATATGTTTCTATCTTTCAGA
CAATAGACGGTTCATACCCTGAGAACGAAGAATTATTGCACTTCGAAAAT
GTATTCTCGCAGCACGAAGATTTTTCCTTACAAAAAATGCCACGATATCA
TCTTGTAAGAAACTGATCGGTctccattgtttttttctttttttggacaa
aatttatatttaagaCTGTCAGACGGCCGGTTTTATGTTTTGGCTGTCCC
TGCAAGGCCCACGCCATGAAATGgagtctaaggaggcgcaaccaaagagt
tttactttgtaaaaagtGACCTGTCCCAATACTGGATGAAAGCTCGACAA
ACAAAGTTTTGTCATTACGACTTAAAGGTTACAGGGTCgtttattttagt
ttatttcCGCTAATTGAAAGGAATAATGATAATGCACGGATTTCTAAGTA
GTTCATTTTAATTCCATGTAATTAGCACGAAATAATATCAGTTAAACAAA
TCATCATCATTGAATCATATGAAACCCgtgtatacaccttttcgaccata
gccgccaattgccgcgcggacatttttttgtccgctttatcccactaata
ccgtcccaatccttttttcgcacctttAGACAATAGAAgaaggtgtcaaa
aaaggattggatctagtttagggggataattgaatatttccccgctataa
ggggaaatattagttaaaaaggcatttctccgatccttggctacttacgc
cctttttgcgcccttaaaggggcaatccgccaccacattgcgaagttatt
ttttgttttcatttgccttAGTTATTCAGACAAAATCGAACGGATTTACC
TTGATGTTACGCGCATGTCTTTGAGTAATCAAGACACGAATAATTCAGAT
CAAAATACAAGATGTACGAAATGGACGAAAATTCACTCTTGgctttttaa
aagttataactcttttctgacgaacaaaaaacatacaattttCATCTAAT
TGGCGACCAATAATTACATGAAATGTGAGGCCAACACTTCAACTGTAATC
GTCAGTAATTTCTAgagtttttcatcattgattacaaagatatgCATGGA
TTACCTCTTCCGAATATCAAAccaaccaacttaaagatttcaGAGACATT
TGCTTGACATGAAGAAAACGCTACATCCCCATAACTTTGGACATTAAATG
GTTGGGAAAATGGTATTAACATTCTATTGAGATGTGAAACTGGTtcaagt
tgaagaattgatgagaaaaatgggcagtacgagaaatatttttgctttga
aatacaAACTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNTTGTTTTCCTGACTAAAGACACTTTTGAATGTGTG
ATTGTTTTCCCTGACTAGAGATACTGTGAGCGTGTATTTAATAAACATAT
TGCATCTTGGCTTAGagatatttttgaatgttttaacgGCGACGTCATTT
CTTGTTTGGATTGTTGTAGTGTTATCTTTTAgaggggtcactcacaaatc
gattcttcccacgactaacgtcaaattgacgctaatttgaaaacccccca
cccccacctcttaacgtcaaagttaaaaattatcaaaaatcgatgaaaat
tttctccttcactttcattgtaggctgctggcatccactaacggattcgt
gctccttatagaggatgcttaataagctacatttcctttgtccagagatt
tgccgcctttagccgatatacggctaaagacatttttagctggcgagtgt
ctacaaatataacattacgtaatgtttaaatNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcataaaactacattttg
atgctttaatttggacttgcatgagtgtataattttttaccacactggat
tcgttgatcactttggctccagataattgttttttcAGTTCTAACTTCTA
CAGATATGtggcagattatttcaaggtattctagtcatgtatatacagta
catttttggggtcatattgaatatttctgacattacttctttatgattct
acaaaagggagtgttgttgttccttcaacaagggcctttNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNtcgccaagatttcctttgcgaaccggaaagcggttggtagatc
attaagcagacctatactacctgtggttttgtagaggtctgcgattcaga
ctactttCATTGTTGTTTcgtcgtcagccatctttaatttcgctacggct
tgctcaggcagataatttctaaactgttttcagaaagttgCCGGAATTAA
TTATCTTCATAATcataaccagacggtgtcaatcgaacaacttcgaacgg
aaatcgcaatcgaaccaatcgaacgcgatcaaatgattgcgattcgattg
ccgaacatttatacattttttaatatacattatataataatatacatttt
gtgcttaatctgaggtttacattaagtgtaatttttaaaacacatgaCTA
CAATATGCAACGTTCCtcactttgacattttcttgttaTGAACTCTCATT
acgctctttttttataaaagaaccatgaaatttgagttaagcctaggctt
gttcttattttttctattgtctagaaTAATAGACCTATTGTTTCAGTAAG
CCtgattgttctcataaaaaaagagtgtatgctgttaaccctttcagtac
cgagcccttttttctatttttttagcctacacttttttttataagcgtat
CGTAATGCCCGAagtttttatcatcttatcCTGGGTCAAGctgaagtttt
tacaagttctttgatgactctgttggtcgttaaatgtcatccctattgtt
tgaaaataaccaatcagttaagcatgttgtaaaaactccaaggcatctcc
tTATCCTGGAGATCagcttacttttttaaatacagtagagtctcaataac
tcgaacccctattactcgaacgtctccttaactcgaacaaattcgttggc
agcatgaaaatctcctaataaactcttataaaaaacctccATATATCGAA
TGTTCCCCTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNGCGCAAGCCTGGACGGCCTCAagttgaaacgttttttttttcga
tcaggCAGTCCattagtctgattcgcagacctatactttctataggtctg
cttaatagtGTATGGATTGGTTTCCCGGTACGGTGGCTCTTATGGTGGCC
GACTCGTGCTATTTGGCGAGTTGCTAAATTTTATGGGAACTCGAATGCGA
gttaaaagataaacaaaagaaatcaaagtgaagacattCCAGTGTCAGAC
GGATTCCATTTTGCCACTGGCACgccttttcgaatgtttcttttattttc
gaatgtttttttattttcgaatgttttgatattagGAGCTTTAAGTCAAc
gaatttgaatttctcaaaaactttgaaagaaaatttcactATAACTATTT
GTTTCTAAAGAACCCTCTTCAGGCTAGTTAAATGAGACATATTGGGTTtc
atcaataaaactgattccaGCATTCTTCCCGTCCCTGTCAAAGTTtaaca
aaacaaagaataaCAGAATCTGCTGctgcactttttcaaacaacTTTAAG
TAGACACAAAGTAAAAGGGAAGAAGGTTCTCTGGAAAGAGATAAAGCCAC
AAAATGATATTACTTACAACAACAATCTTTCCCTATCATAAGCTTCTAAA
ATAACCACATACCTGTCAAGACCTGTTACTGTATCTTTTCTACATTCGTT
CAAAACGAACAAAATGTccaccaaaacaaatcaaaattccaCATTATAAG
CTTGATAACAAATGTTCTAGACGGTAATTTATTTTATTGGTACACATATT
ATATACTCTAAATCTTGTAATTGTATTAACAAAACTTCTTTCGCCTTAAA
CAAACTACCCCAAATTAAAAACAAGTACTCGAGCTTGACGAAAACCACTT
CCCGCTTCGAcggccatcttgaatttgaacAGCGAAAGCTATGCTACTTC
GTAACAGGTAGAGTACCTTTGCAAATNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNAAATTAATCATCATAAGCACTCGCCAGCAAAAA
TAGCCCTCTCGCCGAATTTCGGCGAGAAGCGGCATTTTGTTGGAAAGAAG
ATTTACCGAGTATTAAGTAGCCTATAtctatcccaacacgcgattttttt
atcactctgtTGTTGATacggtgtcgaggaaaaagccgtggtcgtctggt
acaggctaagtattaagcagcctctataagaaacttttttcgctagagga
tgaacAGAAGCAAGCCTAGCAGTCCATCTGCAAGTGTAaggggaaatatt
tagtcgcatttgtgcgaatcttgttaaataattaaaaatggCACGCGCGC
TGACCGcgtgactacggtcgaaaaggtgtatttctaTGAGCAAATTTATG
CAAATCAATGCACAATTTTTCATCATCTTTTCACTCATCTTTTTTAAGGT
GAAGATTTGCAAGTGTTGGTTGATTCCGACCGGCTGGTACCTACCACGCT
GGTATCTGATCAATGTTTTGAATAAGCGGATCCTCAAATTACACGAGGAT
GATGTCCTCATTTTGAGGGATGGGATTGATACTCTCACACCTGAGTGTAT
TGAACAGGTAATATAAAGtctaaagaaattgaaaatacatTATATAGTTT
ACGCTCTTTAATTCgccgttctactattcgatagctCCATATTTCGATAT
TAAAagccaccgtcaacaagaaactttaaaaacgacgctctactattcgt
gACGCTcccttttttaatgaaaatctgattccccttgaaaatcgaattag
agagcgtaaaCTATATAATGTTACCTCTTTAAAGGCATCATGTTTTTGAG
AATACTctgcaaaaaaagtttgtttgcaAATTTCAagagaattttttatc
aaagattCAGGAGTAAAAAGATTTCCATTAATCCCTTTCTTGCCCTCTGA
TAGGAGAATAATCTCTCGCAAAAGGATCGAATATAGGGATTGTGTACGTT
TTCTTCAGCAATACTCCATTGCAGTGCTAAAAGTACATCTGAACACATAT
TTATGTCTGAACGAAgtaaaactttcattttcattttccgtCTCGGACGA
ACAACTTGGTTTTGACCCTGCATCGAATAAAAAACTCTTTTCTTACAAAT
TCTTGGTTGGGCTCGATGACCCAAGTTCCTCCTCTCCAACTTGTTGACTC
GATTGTTCAGGTTGTTCACTtgcaatttcattttattttgcagGCAGTTC
ATGTTCGAGGCTTAGACGAAGCTTCGTTGAATGATGAATCGAAGAAGTTT
TGGTTGAAAGATTGGATCGAACTTTCCTCTAACGTTAAAGGTGATTATAC
CTGCAGCGAACTGggtttttacaaaattcttttttcgttttttttttttt
tttttttttttttttttttttttttttttttggtttgacgtaagaacaat
ttttgaatttgctTCAGTAAGGgttgagaaatttaaaatttacttttaag
aaattccaaagccttaaaaactttttaagtatGTCTTCACCTATCTACTC
AGTCCAAGGACAAAGGGATGTTCTAATGGAGGGTAACATCAGCGCCATGA
GCTTCAAAACATTATTCATAGTGttcccccctttataaagggggattctg
attttgcCCCATTTTTTAAGTTATGGGgggaaatgaaaaatttatgggGG
AAATAAAAAGGGGGGGAAACcataaattttgattgggggaacttcactga
tcCCAAGGTAATCTCATAGAAGACCagtttaagcaataaaatcagcaaac
cTTACTTGAACCaaaccaatttttcaataaaacttcattttcaagcagtt
tccaGGCTATAAtttcaagctttccaaaactttaaacttgatttaaggca
tttttatgttaaccatatggggGAACTGCATAATAGTCAAATAActgggg
aaagcaaaaaagaggggggaaccgaaaaatttttaaatatggtgagggat
aaaaaagaggggggttggggggtacttaggcaaatggagggtacggtatg
tgccgcccttaagggtaccttttttggacttccaaagtcccgctaagggt
cggaaaaatcagaaaatcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNACTTCATTTTCAAGCAGTTTCAA
GGCTATAAtttcaagctttccaaaactttaaacttgatttaaggcatttt
tatgttaaccatatggggGAACTGCATAATAGTCAAATAActggggaaag
caaaaaagaggggggatccaacccaggaggacactatgttaTTCCGAAAG
TAATTATAGTAGATGTTTTCATCTAAGTTTCTCACATCAGATATTCTAGT
CTAGAAACTTAATTGGTCTTccgttatttttgttttttcttttgttcagG
CAAAGATATCTCTTTCTTGGCACACAGTGCGGTCTTCAAAGCGGCCAACT
TTGAAATGTTGCAACAAAATGGTAGCAAAGTAGTGGATCAAGTGGAATCA
CGTTGAAGTCAAAGAGTTGTGTGTTTTGATGTCGTGCAGGTATCAAATTG
GATGTGTCTGTCCATGAATAGAAGTTGTAGTCGACTGATTCTATTGACAT
ATCAAGAAAATACAGAACAGGGCAATAAAGCAGGAACAAACCTTTAGTCT
GtatgaaaaatttcatcaagcTATACTTGCTCTTAGACGATGTTGGTAAA
GGGAATGACAGAGCTTATGGTGTTGTGTTTGTGAACTAGATGGTAAAGAA
GATGTTCCTAAAAAACGATGCTTCGACTTTAACCCTAGTTGGCTCTGTAC
CGAGAAACGCTGATTCTTGATATCATTGCATTCATATTGATATTCATGCA
CTTCATACCTGGATATactaatgtttaaaaatgttgATACCTATAATGCT
CGTCCAAAAGAAGGTAAAGAAGGAACTACTTTTCTTTGTTTCATGGTTGA
GAATGTTGTTTTTACTTAGAGGAAAGGTACTAAGAGCTCCCATGCTATGA
AGTGAAGATTTGTTTCAGGTTGGCAATGAAGGAACTAAGCCGAACACTTT
CAGTTTATGCTACCATTTTATCTATAATGAGACCCCCAGctgttttcgtg
atggcgtgatttgGCGTTTTTCAAGTTtgtgatttcgtgatttaagattt
taaagtgcgtGATTGCTGCGTGATCGGAGGAACCAACGTGATTAACGTGA
TCGTTTAACTCGGAAATTTAACTCGTg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010888-exon-sc0000118-1491911889:217821..218192 | TCONS_00010888-exon-sc0000118-1491911889:217821..218192 | Clytia hemisphaerica | exon |
| TCONS_00010888-exon-sc0000118-1510915933:217821..218192 | TCONS_00010888-exon-sc0000118-1510915933:217821..218192 | Clytia hemisphaerica | exon |
| TCONS_00010888-exon-sc0000118-1575043694:217821..218192 | TCONS_00010888-exon-sc0000118-1575043694:217821..218192 | Clytia hemisphaerica | exon |
| TCONS_00010888-exon-sc0000118-1491911889:221349..221498 | TCONS_00010888-exon-sc0000118-1491911889:221349..221498 | Clytia hemisphaerica | exon |
| TCONS_00010888-exon-sc0000118-1510915933:221349..221498 | TCONS_00010888-exon-sc0000118-1510915933:221349..221498 | Clytia hemisphaerica | exon |
| TCONS_00010888-exon-sc0000118-1575043694:221349..221498 | TCONS_00010888-exon-sc0000118-1575043694:221349..221498 | Clytia hemisphaerica | exon |
| TCONS_00010888-exon-sc0000118-1491911889:222320..222402 | TCONS_00010888-exon-sc0000118-1491911889:222320..222402 | Clytia hemisphaerica | exon |
| TCONS_00010888-exon-sc0000118-1510915933:222320..222402 | TCONS_00010888-exon-sc0000118-1510915933:222320..222402 | Clytia hemisphaerica | exon |
| TCONS_00010888-exon-sc0000118-1575043694:222320..222402 | TCONS_00010888-exon-sc0000118-1575043694:222320..222402 | Clytia hemisphaerica | exon |
| TCONS_00010888-exon-sc0000118-1491911889:225461..225635 | TCONS_00010888-exon-sc0000118-1491911889:225461..225635 | Clytia hemisphaerica | exon |
| TCONS_00010888-exon-sc0000118-1510915933:225461..225635 | TCONS_00010888-exon-sc0000118-1510915933:225461..225635 | Clytia hemisphaerica | exon |
| TCONS_00010888-exon-sc0000118-1575043694:225461..225635 | TCONS_00010888-exon-sc0000118-1575043694:225461..225635 | Clytia hemisphaerica | exon |
| TCONS_00010888-exon-sc0000118-1491911889:226320..226424 | TCONS_00010888-exon-sc0000118-1491911889:226320..226424 | Clytia hemisphaerica | exon |
| TCONS_00010888-exon-sc0000118-1510915933:226320..226424 | TCONS_00010888-exon-sc0000118-1510915933:226320..226424 | Clytia hemisphaerica | exon |
| TCONS_00010888-exon-sc0000118-1575043694:226320..226424 | TCONS_00010888-exon-sc0000118-1575043694:226320..226424 | Clytia hemisphaerica | exon |
| TCONS_00010888-exon-sc0000118-1491911889:232369..232527 | TCONS_00010888-exon-sc0000118-1491911889:232369..232527 | Clytia hemisphaerica | exon |
| TCONS_00010888-exon-sc0000118-1510915933:232369..232527 | TCONS_00010888-exon-sc0000118-1510915933:232369..232527 | Clytia hemisphaerica | exon |
| TCONS_00010888-exon-sc0000118-1575043694:232369..232527 | TCONS_00010888-exon-sc0000118-1575043694:232369..232527 | Clytia hemisphaerica | exon |
| TCONS_00010888-exon-sc0000118-1491911889:233164..233260 | TCONS_00010888-exon-sc0000118-1491911889:233164..233260 | Clytia hemisphaerica | exon |
| TCONS_00010888-exon-sc0000118-1510915933:233164..233260 | TCONS_00010888-exon-sc0000118-1510915933:233164..233260 | Clytia hemisphaerica | exon |
| TCONS_00010888-exon-sc0000118-1575043694:233164..233260 | TCONS_00010888-exon-sc0000118-1575043694:233164..233260 | Clytia hemisphaerica | exon |
| TCONS_00010888-exon-sc0000118-1491911889:234670..235497 | TCONS_00010888-exon-sc0000118-1491911889:234670..235497 | Clytia hemisphaerica | exon |
| TCONS_00010888-exon-sc0000118-1510915933:234670..235497 | TCONS_00010888-exon-sc0000118-1510915933:234670..235497 | Clytia hemisphaerica | exon |
| TCONS_00010888-exon-sc0000118-1575043694:234670..235497 | TCONS_00010888-exon-sc0000118-1575043694:234670..235497 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000118 | supercontig | sc0000118:217821..235497 + |
Blast
BLAST of TCONS_00010888 vs. Swiss-Prot (Human)
Match: LTMD1 (LETM1 domain-containing protein 1 OS=Homo sapiens GN=LETMD1 PE=1 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 8.603e-31 Identity = 75/287 (26.13%), Postives = 146/287 (50.87%), Query Frame = 1
Query: 364 FQKVRYMVDIFWAGCKALFRDVRLALKTRRKLGLYHVRDYSRLTREELRHLRQTRQDVVKTFPVALLFMVPFIGYTAPILAYFYPRQLLSQQFWHPDQKKEF--VLEEYEKRS--------QYYLPLIKECGITAKEIVNKDLLNFCLKTIDGSYPENEELLHFENVFSQHEDFSLQKMPRYHLVKICKCWLIPTGWYLPRWYLINVLNKRILKLHEDDVLILRDGIDTLTPECIEQAVHVRGLDEASLNDESKKFWLKDWIELSSNVKGKDISFLAHSAVFKAANF 1194
F + + IF G + L+ D + A + + + ++++ + +L E+ HLRQ RQDV K + ++ + PF Y +L Y +PRQLL + FW P Q+ +F + + K+S + +PLI + G+ + L + C K G++P ++L FS H + ++ H+ + + L+ + YLP L + L +H+ D + + GI LT + ++ A ++RGL+ + ++ + WL +W+++S ++K ++S L H+ V + N+
Sbjct: 79 FPRFYVLYTIFMKGLQMLWADAKKARRIKTNMWKHNIK-FHQLPYREMEHLRQFRQDVTKCLFLGIISIPPFANYLVFLLMYLFPRQLLIRHFWTPKQQTDFLDIYHAFRKQSHPEIISYLEKVIPLISDAGLRWR------LTDLCTKIQRGTHPAIHDILALRECFSNHP-LGMNQLQALHVKALSRAMLLTS--YLPPPLLRHRLKTHTTVIHQLDKALAKLGIGQLTAQEVKSACYLRGLNSTHIGEDRCRTWLGEWLQISCSLKEAELSLLLHNVVLLSTNY 355
The following BLAST results are available for this feature:
|
