TCONS_00010886 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010886
Unique NameTCONS_00010886
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length443

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010886 ID=TCONS_00010886|Name=TCONS_00010886|organism=Clytia hemisphaerica|type=transcript|length=443bp
GAAGGAATAAAATTTACGGTTAACAAAGATCGGCATAATATAGACATAAA
TGTATGTTATAATAAGTGTTCAAATACGGTATGAAAATGGCCCAACACGA
TGTGGTGATGAATGGTCAGACACTAAAGTAATGGAAGCAATTGGTGCCAA
ACTCACTGAAGaGCTGGGTGCCAATTTTAAACATTATGAGTGTCCTGACC
CGCCGAGAGTTGTATTGGATCGTTTAAATAAACTTGGGTTCAAATTCATG
GGCATGACTGGTTGTGGTCAATGTGTCTTATGGACACTATTCAAGGAAGA
TTGAACAGAGACGCCGAGAAAATTGAGGAAATTGCATCAAAATTGCATTG
TACTTAATACTTTAGTCCAATGGTTATTTCTTTCATTGGTTGATAGATTG
AATGATCTTGtcatgttttcttgaaataataatgatatcatgc
Run BLAST on NCBI

transcript from alignment at sc0000118:216923..217649+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010886 ID=TCONS_00010886|Name=TCONS_00010886|organism=Clytia hemisphaerica|type=transcript|length=727bp|location=Sequence derived from alignment at sc0000118:216923..217649+ (Clytia hemisphaerica)
GAAGGAATAAAATTTACGGTTAACAAAGATCGGCATAATATAGACATAAA
TGTATGTTATAATAAGTGTTCAAATACGGTATGAAAATGGCCCAACACGA
TGTGGTGATGAATGGTCAGACACTAAAGTAATGGAAGCAATTGGTGCCAA
ACTCACTGAAGGTACTAAATTTCTAATCCCTGATTTTACACCATATATAT
TAcaagttgtattttttaatgGTGTATTCAACAATAGATTGAAATTGATT
TGGATATTACTAAATTCTAAAGTAAGATTTTGGTCACTCTCTACTTACTG
CACTGCTCAGTAAAACTTTATTTCTCTTgaactatttttttcaaatggaa
AAATAGGACTTTCAACTGCTTTAAACCAGCAATAGTTAATTGGTAGCTAC
AAAAGTTACACCACATTCTCATTAAAtgcctttcaattttttcagaGCTG
GGTGCCAATTTTAAACATTATGAGTGTCCTGACCCGCCGAGAGTTGTATT
GGATCGTTTAAATAAACTTGGGTTCAAATTCATGGGCATGACTGGTTGTG
GTCAATGTGTCTTATGGACACTATTCAAGGAAGATTGAACAGAGACGCCG
AGAAAATTGAGGAAATTGCATCAAAATTGCATTGTACTTAATACTTTAGT
CCAATGGTTATTTCTTTCATTGGTTGATAGATTGAATGATCTTGtcatgt
tttcttgaaataataatgatatcatgc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006113XLOC_006113Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010886-exon-sc0000118-1491911889:216923..217083TCONS_00010886-exon-sc0000118-1491911889:216923..217083Clytia hemisphaericaexon
TCONS_00010886-exon-sc0000118-1510915933:216923..217083TCONS_00010886-exon-sc0000118-1510915933:216923..217083Clytia hemisphaericaexon
TCONS_00010886-exon-sc0000118-1575043694:216923..217083TCONS_00010886-exon-sc0000118-1575043694:216923..217083Clytia hemisphaericaexon
TCONS_00010886-exon-sc0000118-1491911889:217368..217649TCONS_00010886-exon-sc0000118-1491911889:217368..217649Clytia hemisphaericaexon
TCONS_00010886-exon-sc0000118-1510915933:217368..217649TCONS_00010886-exon-sc0000118-1510915933:217368..217649Clytia hemisphaericaexon
TCONS_00010886-exon-sc0000118-1575043694:217368..217649TCONS_00010886-exon-sc0000118-1575043694:217368..217649Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000118supercontigsc0000118:216923..217649 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
21.3776	18.481	22.4882	28.3832	17.788	15.3489	18.9076	21.8983	24.0193	21.2061	13.8245	9.69353	6.95754	7.22547	8.35089	9.05417	17.3001	13.5323	4.99625	4.04765	10.701	8.58013	8.86574	12.3274	6.1857	8.28088	6.2368	4.43739	7.40432	7.88673
Blast
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BLAST of TCONS_00010886 vs. Swiss-Prot (Human)
Match: GFRP (GTP cyclohydrolase 1 feedback regulatory protein OS=Homo sapiens GN=GCHFR PE=1 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 1.561e-22
Identity = 40/78 (51.28%), Postives = 51/78 (65.38%), Query Frame = 2 
Query:   65 SVQIRYENGPTRCGDEWSDTKVMEAIGAKLTEELGANFKHYECPDPPRVVLDRLNKLGFKFMGMTGCGQCVLWTLFKE 298
            S QIR E GPT  GDE SD ++M+ +GA     LG NF  Y   DPPR+VLD+L + GF+ + MTG GQ ++W L KE
Sbjct:    7 STQIRMEVGPTMVGDEQSDPELMQHLGASKRRALGNNFYEYYVDDPPRIVLDKLERRGFRVLSMTGVGQTLVWCLHKE 84
The following BLAST results are available for this feature:
BLAST of TCONS_00010886 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GFRP1.561e-2251.28GTP cyclohydrolase 1 feedback regulatory protein O... [more]
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