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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010885 ID=TCONS_00010885|Name=TCONS_00010885|organism=Clytia hemisphaerica|type=transcript|length=1652bp
ATTTGAATCTATCCAAGAGAAAAAGACCAAAAAGTCAACTGTATTTGTCC
AAATGCTGCCTTGAAATTCCCAGTGTTTTGTGTAAGCTACGTCCACATAT
AATtttatactttcactttcacttttaaaCAGTTTCTCGAAATGAACCGA
AATGAACCAAAATGATCCAAAATCGTAGCAAATCATCCTCATCAAACTTC
AAATACATATGCAAACATATCTCATACATNATTTGCGGGGCCAAATTGAT
AGGATGAAGAAAAGTGTGTGATTTGTTAGTGAAAGTAATTCCCAATTAAC
ATTCTGAATTAGGCTTTTAAAAACAGAAGCTAATATTCTGTAGAGTTCta
tgaattttcaaacaaatgaGGTTAAAGTGATCCAACTGCAATCCATTAAT
CAAACTCATTCTTACATCTGATAATGTGAGAGTTCAATGAATTTTAATGG
AACTTAAATTATTGCATGGAGTTAGATTGATACGGTCTGCTTAATCCCAG
CAATTCTCTTACCATTGCTTAAATGGTGTGGCATCAATAAGGATAATGGC
GTTCTTGACCAAAGTTTTGGTACGTACAAGTTCATTGTTGCTAGCATTGT
AGACAACATCAAGGACTCTGGTCTTTCGTGTGaTACTCTCTGATCCCCAG
GAGTAATTTCCAGCATCCAATCGCATGGCTCTGAATTTCAAGTTTCCACC
TCGACATCTCACTGGGTGGATTCGCTTTACACCAATCTGAATTTACAatt
aaatttataaattttcattgTGAAGAGACATTTATCAGTTGCTATTATAT
TTTTCCTTCAAGTGCCTTATAAGAATTAGCCACCCAAAGGCagactaaat
aaaaataatagtaAAAGAACAATTAACAAGATGGCAATGGCATAAATGAT
GAGATCTCTGTAATAATTAGCTATTGCCTTCACCAATCATTAGACTCAAA
CAAATCTGTTTTCATGTCAGTAGTTTGACAAATTAATCTGCTATTCAACA
TCAAAGCACAGACTAACAAAATTATGACAATCATCATCAAAATGTGAATA
TGATAATCATTTCCACTTGACCAACTTTAATGGTTGAACCCAAACCAGTA
TTTGTTTACCTTGGTGTTGGCAGCAGGACGTCCAAGACAGTGCTTCCTCT
TTTTGGTAAGAGGCTTCTTGCGACCTCCAGTGTGTCGGCGTTTATGCCAG
CTATCTCTCGAGATACCTAAAAGTCAAACCGATGAAGGTGGTCAATAACA
TCCAAGTTTAAATTGTCATTCTCAAAACAAGTAGGGCAATACCAGTAAAA
ATCGATACAATGATAACTTTACCAGGCAATTGCGTTGTTTAGGAAGTGCC
AAGCCACTCGATTGGGCAGATTCTTGCTGATAAAGTGTAGTATAATATTG
TAAACCTACCCATCTTGGAGCTGGATAGTAAAAAGACTTCTTGCCCGAAG
TtctgttttgatgttgattcgGTGAGTCTATTTTCAGGAACGTGTTTTTA
TGGTAACAAGCTTCTCCCCCGCATAAAGAAGATAGCGTTCCGAAAAATAC
AATTTTCGTGATATTTCACATGgcaatgaaattctaaaagtgaAAGTATC
TTTGCCTGGAAACTTGCATCACTTTTCTCCGATTGTCGAAGGTTGGATGT
TT Run BLAST on NCBI transcript from alignment at sc0000118:206041..207968+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010885 ID=TCONS_00010885|Name=TCONS_00010885|organism=Clytia hemisphaerica|type=transcript|length=1928bp|location=Sequence derived from alignment at sc0000118:206041..207968+ (Clytia hemisphaerica)
ATTTGAATCTATCCAAGAGAAAAAGACCAAAAAGTCAACTGTATTTGTCC
AAATGCTGCCTTGAAATTCCCAGTGTTTTGTGTAAGCTACGTCCACATAT
AATtttatactttcactttcacttttaaaCAGTTTCTCGAAATGAACCGA
AATGAACCAAAATGATCCAAAATCGTAGCAAATCATCCTCATCAAACTTC
AAATACATATGCAAACATATCTCATACATNATTTGCGGGGCCAAATTGAT
AGGATGAAGAAAAGTGTGTGATTTGTTAGTGAAAGTAATTCCCAATTAAC
ATTCTGAATTAGGCTTTTAAAAACAGAAGCTAATATTCTGTAGAGTTCta
tgaattttcaaacaaatgaGGTTAAAGTGATCCAACTGCAATCCATTAAT
CAAACTCATTCTTACATCTGATAATGTGAGAGTTCAATGAATTTTAATGG
AACTTAAATTATTGCATGGAGTTAGATTGATACGGTCTGCTTAATCCCAG
CAATTCTCTTACCATTGCTTAAATGGTGTGGCATCAATAAGGATAATGGC
GTTCTTGACCAAAGTTTTGGTACGTACAAGTTCATTGTTGCTAGCATTGT
AGACAACATCAAGGACTCTGGTCTTTCGTGTGATACCTGAAGCAAAGTAA
TcaatatttatcattttcaatttttaaatccttttCAAAATAAAGCTTTC
CCTAGTCAAGTTTATTAACTCCTAGTCTGGCTCATTTGGAGATCAGTGTA
ACTATGACAAAACAGGATCAACGGAGTATGATTTGATCAAAACGATCACA
TATCCCTCaatattaaatttcatcatttctcCAATATTTTGTAACAGTAC
TTGTTTGTAACTTGTGTGAAAATTTCCTACTCGAGTAttacattatcaaa
aatataacaTACTCTCTGATCCCCAGGAGTAATTTCCAGCATCCAATCGC
ATGGCTCTGAATTTCAAGTTTCCACCTCGACATCTCACTGGGTGGATTCG
CTTTACACCAATCTGAATTTACAattaaatttataaattttcattgTGAA
GAGACATTTATCAGTTGCTATTATATTTTTCCTTCAAGTGCCTTATAAGA
ATTAGCCACCCAAAGGCagactaaataaaaataatagtaAAAGAACAATT
AACAAGATGGCAATGGCATAAATGATGAGATCTCTGTAATAATTAGCTAT
TGCCTTCACCAATCATTAGACTCAAACAAATCTGTTTTCATGTCAGTAGT
TTGACAAATTAATCTGCTATTCAACATCAAAGCACAGACTAACAAAATTA
TGACAATCATCATCAAAATGTGAATATGATAATCATTTCCACTTGACCAA
CTTTAATGGTTGAACCCAAACCAGTATTTGTTTACCTTGGTGTTGGCAGC
AGGACGTCCAAGACAGTGCTTCCTCTTTTTGGTAAGAGGCTTCTTGCGAC
CTCCAGTGTGTCGGCGTTTATGCCAGCTATCTCTCGAGATACCTAAAAGT
CAAACCGATGAAGGTGGTCAATAACATCCAAGTTTAAATTGTCATTCTCA
AAACAAGTAGGGCAATACCAGTAAAAATCGATACAATGATAACTTTACCA
GGCAATTGCGTTGTTTAGGAAGTGCCAAGCCACTCGATTGGGCAGATTCT
TGCTGATAAAGTGTAGTATAATATTGTAAACCTACCCATCTTGGAGCTGG
ATAGTAAAAAGACTTCTTGCCCGAAGTtctgttttgatgttgattcgGTG
AGTCTATTTTCAGGAACGTGTTTTTATGGTAACAAGCTTCTCCCCCGCAT
AAAGAAGATAGCGTTCCGAAAAATACAATTTTCGTGATATTTCACATGgc
aatgaaattctaaaagtgaAAGTATCTTTGCCTGGAAACTTGCATCACTT
TTCTCCGATTGTCGAAGGTTGGATGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010885-exon-sc0000118-1491911889:206041..206672 | TCONS_00010885-exon-sc0000118-1491911889:206041..206672 | Clytia hemisphaerica | exon |
| TCONS_00010885-exon-sc0000118-1510915933:206041..206672 | TCONS_00010885-exon-sc0000118-1510915933:206041..206672 | Clytia hemisphaerica | exon |
| TCONS_00010885-exon-sc0000118-1575043694:206041..206672 | TCONS_00010885-exon-sc0000118-1575043694:206041..206672 | Clytia hemisphaerica | exon |
| TCONS_00010885-exon-sc0000118-1491911889:206949..207968 | TCONS_00010885-exon-sc0000118-1491911889:206949..207968 | Clytia hemisphaerica | exon |
| TCONS_00010885-exon-sc0000118-1510915933:206949..207968 | TCONS_00010885-exon-sc0000118-1510915933:206949..207968 | Clytia hemisphaerica | exon |
| TCONS_00010885-exon-sc0000118-1575043694:206949..207968 | TCONS_00010885-exon-sc0000118-1575043694:206949..207968 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000118 | supercontig | sc0000118:206041..207968 + |
Blast
BLAST of TCONS_00010885 vs. Swiss-Prot (Human)
Match: RS8 (40S ribosomal protein S8 OS=Homo sapiens GN=RPS8 PE=1 SV=2) HSP 1 Score: 127.872 bits (320), Expect = 1.185e-33 Identity = 58/81 (71.60%), Postives = 71/81 (87.65%), Query Frame = -2
Query: 497 QIGVKRIHPVRCRGGNLKFRAMRLDAGNYSWGSESITRKTRVLDVVYNASNNELVRTKTLVKNAIILIDATPFKQW*ENCW 739
+IG +RIH VR RGGN K+RA+RLD GN+SWGSE TRKTR++DVVYNASNNELVRTKTLVKN I+LID+TP++QW E+ +
Sbjct: 37 KIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHY 117
The following BLAST results are available for this feature:
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