TCONS_00010878 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010878
Unique NameTCONS_00010878
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length561

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010878 ID=TCONS_00010878|Name=TCONS_00010878|organism=Clytia hemisphaerica|type=transcript|length=561bp
tattttcttattgtcATCACTTCACTGAAGCAAGattttaagaagattaa
aaagcgaaaaaacaCTGAAAATTCAAAAGatGTCAACAAAGATTAGTTGG
CTTTTCTTACTGGTGACGTTCTATGTCTTTACAGAGTCAGAGGGTCATTC
GAAAGAAGATACCAATGTCATGGGTGGGCTTTTGCAAGACCATTTACGAG
GTTCAAAGAGATCTAAACGGTCGTTAAAATGGAATGGGGAAATCATTTGT
TCAGTTCAAGGTAATATCAACGCATTGACCAAATGCAAAAAGAACCCTGA
AAAGATTTCCATGAAGTGTCGGTTGAAGGATGAAGTAACCGTCAGGTGTA
ACCGAGTAGGATCTCATTGGGTGTGCCCAACCCCAAGTCCACCGATCGGC
CAATCAAAAATCGATTGCTGTGACTTGTTCTGTagcatataatttttttt
cttttgaaagatatATTGTGGGTTAAAATGTTTAAAAGCCTGATTTGTTc
tgttactttaatgggataaactttcgcgggaattaaatttcgcggttggg
cctatccgcga
Run BLAST on NCBI

transcript from alignment at sc0000118:120775..124311+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010878 ID=TCONS_00010878|Name=TCONS_00010878|organism=Clytia hemisphaerica|type=transcript|length=3537bp|location=Sequence derived from alignment at sc0000118:120775..124311+ (Clytia hemisphaerica)
tattttcttattgtcATCACTTCACTGAAGCAAGattttaagaagattaa
aaagcgaaaaaacaCTGAAAATTCAAAAGGTATACTATTACTAAGAGAAA
TTGCACATACAGTAACATAAGCCTTAGTAGCTGGCTTCCTAGGCTACGTC
ATGTCTTCCtttgtttcgagcgtaaaactcctactcttcgggatatgagc
actgctcttgttttgaatattgaaattctccggataaaTCGAATGCACag
tgaggttttaatgaaacaatagagagtttcgaatcCTAAGcaaatcagct
gtgttttaatcATCCTTTATtggaaatctctattgataaacatcttttgt
gaaagttgtctattatgtttaaacctatatcaataagcaattcccggtgg
gggttactagtggccgcctatagcagtgcctatagaccaagagtaaggcc
taaaagcctggagctgtctattgtgtagactactgACTTCCTACTTGTCT
CTTGACCTTggaattgtttttagttttacCGAGTTTCGATAACCTTGGAA
AGCTAacttctcttttcttttctttttaagatGTCAACAAAGATTAGTTG
GCTTTTCTTACTGGTGACGTTCTATGTCTTTACAGAGTCAGAGGTTTGTT
TGATATTAATATGATTCCAAATATGAGCCAGATTTTCTatccaaaagcaa
aaaaaatttaaccctCTAGTATGAAGATATATAATTGTGTAGCTTTCTTC
GCATGGACAAAAACAATCATACTTTGAGAGAAATCCACTGAACTTTTATA
TATCACTGGGCAAAGCTAAGAAAGCTTAAGAAATGTGGGGCTTAGAGGGT
ACAAAATACTGGAAACTCagtattttttcataaaataccaGCGTAATAGC
GAAAAAGTTCTCTAATACCGGTCAAAGATGTTCTGAAGAGTATCGGATAT
CCGGCTTTTCAATACCGGAATACCCGGCAATACCGGATCTCGGAAGGCCC
ATAGAACTATCAAGATTGacgtactcttaggtgccaaataaatggccccc
cccgcttgttaatttttcgaaaattttccaacccccccggaccttattag
gaccccccccccctttattaatttttaNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNcccccccgtttatttggcacctaag
agtaatcgCGAGAAGGAAGAAATAACATTCGCTTATATTTTTTCAGGGTC
ATTCGAAAGAAGATACCAATGTCATGGGTGGGCTTTTGCAAGACCATTTA
CGAGGTAAACTTTTTAACCTCTTCCACACATTGGTACATTCATCAAGAAA
AAACAAGACTAGAAAGGGAATCAAAAAAATATAGGATCAATCCTATCAAA
TTGCATGTGTATATTATTAGATAATacaatggagtctccataactcgaac
acgcagggaaacacaaaatgaaggaaatttcgagttatgattggtttata
aggcattgtcaACTAAAAGacccataaaacttgttcgagttaaggaggtt
CGATTTATGGAGACACCACTGTATATTCATTTTTAGAGAAGACCAAAAAT
CGAGCTAAGCGTTCCTTAACACTAACGGAAGTCCACCTCTGTGATATGGG
CAAATATCATACATCgctcaaaagatgtagaaacaGACTTGACAAGCTCT
ATATTCAATGTCGAATAACCGTCACAAGAGAAATGGAGTGTGGTAGAGAG
TACACCGGGAGTCGAGATTTAAAATGCAAAAGGCCGACGACCCAAAAGCA
TCAGATTCATTGTTGCGACCTAAGATGTGCATTTTAAATTGACATATTTT
ATGGTTTATATATCAAATAAACAATATCAAATATATAATATCGCCACCAT
AAACTTTTTATATCGTATGTTTTTCACCCTATCACACAAGGCACCGAAAT
GCTTAATGCCTCACCAAGCTTTGAACTAGACCTTCGTATCCCAAGGTTAT
GACAGTGATTTAAGAATAACTGATTTGATGTGTTTGAGCTTTTCATTCTT
TTCGtgtaaaatatttcattaagTCGTGACGTGCCGgaagcaaaaaagtt
ttcgtttattttgagaAATAGTTTCAGGATGTGTTATCGGCGGAAATATC
GTCGGACACTAAttttttcggccggaaatttcGTCACCGGCTattttttt
cgtcacttttatCCGACGAATTTACCGCCGATAAGGTAACGTAACTAAAT
CACTGACGTCAGCAACAATGATTCGAatccaaaagttgaaaaaaaatcgC
CAAAAAGCCGAAACGAAAAGCTTTATACAATGCCATCGAATGTGactttt
aatttttcgattttctaaCACAAATCGAAAGAAAACAAGTCAAACGTTTT
TCTTATCTTTGATGTTACTTTTTCAACATTGCATTTTAAGGAATCAAAAA
TGTCTGTTTAAATGTCTTATGTCTGAATGTCTATTTTTACTAAACCATTT
ATATTCGGGGTTCGGGGTATGCGTCCATCCTAAGGGTTGGTTCTTCCCGT
CACATGGGGTGTTTAGCAATGCGAGAGGACCTACGCTACGCGATCGATTA
GCATGGAATCTCTTCAATCAGTCGACCACGTCcgccctcgtagggtgcct
tttttggaaaatttggggaaaaagtagaacatttgagaacattttggaat
ttcagttcCATTcaaggtcacttttttcgcaaatttcgacaCCCCGGGCA
TATTATCTCTTACATTAAGATCGTGAAAGTCTTTTAAGTACATAGACTTT
AACATTccaaatttatcttttttcagGTTCAAAGAGATCTAAACGGTCGT
TAAAATGGAATGGGGAAATCATTTGTTCAGTTCAAGGTAATATCAACGCA
TTGACCAAATGCAAAAAGAACCCTGAAAAGATTTCCATGAAGTGTCGGTT
GAAGGATGAAGTAACCGTCAGGTGTAACCGAGTAGGATCTCATTGGGTGT
GCCCAACCCCAAGTCCACCGATCGGCCAATCAAAAATCGATTGCTGTGAC
TTGTTCTGTagcatataattttttttcttttgaaagatatATTGTGGGTT
AAAATGTTTAAAAGCCTGATTTGTTctgttactttaatgggataaacttt
cgcgggaattaaatttcgcggttgggcctatccgcga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006110XLOC_006110Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010878-exon-sc0000118-1491911889:120775..120853TCONS_00010878-exon-sc0000118-1491911889:120775..120853Clytia hemisphaericaexon
TCONS_00010878-exon-sc0000118-1510915933:120775..120853TCONS_00010878-exon-sc0000118-1510915933:120775..120853Clytia hemisphaericaexon
TCONS_00010878-exon-sc0000118-1575043694:120775..120853TCONS_00010878-exon-sc0000118-1575043694:120775..120853Clytia hemisphaericaexon
TCONS_00010878-exon-sc0000118-1491911889:121355..121417TCONS_00010878-exon-sc0000118-1491911889:121355..121417Clytia hemisphaericaexon
TCONS_00010878-exon-sc0000118-1510915933:121355..121417TCONS_00010878-exon-sc0000118-1510915933:121355..121417Clytia hemisphaericaexon
TCONS_00010878-exon-sc0000118-1575043694:121355..121417TCONS_00010878-exon-sc0000118-1575043694:121355..121417Clytia hemisphaericaexon
TCONS_00010878-exon-sc0000118-1491911889:122371..122428TCONS_00010878-exon-sc0000118-1491911889:122371..122428Clytia hemisphaericaexon
TCONS_00010878-exon-sc0000118-1510915933:122371..122428TCONS_00010878-exon-sc0000118-1510915933:122371..122428Clytia hemisphaericaexon
TCONS_00010878-exon-sc0000118-1575043694:122371..122428TCONS_00010878-exon-sc0000118-1575043694:122371..122428Clytia hemisphaericaexon
TCONS_00010878-exon-sc0000118-1491911889:123951..124311TCONS_00010878-exon-sc0000118-1491911889:123951..124311Clytia hemisphaericaexon
TCONS_00010878-exon-sc0000118-1510915933:123951..124311TCONS_00010878-exon-sc0000118-1510915933:123951..124311Clytia hemisphaericaexon
TCONS_00010878-exon-sc0000118-1575043694:123951..124311TCONS_00010878-exon-sc0000118-1575043694:123951..124311Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000118supercontigsc0000118:120775..124311 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.114119	0	0	0	0.132195	0	0	0	0	0.29512	1.64442	3.24278	69.5611	81.3723	9.138	10.693	9.78358	9.73612	2.96633	1.51063	41.5501	41.734	35.2369	45.5423	1.35547	1.38601	179.877	233.505
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010878 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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