TCONS_00010877 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010877
Unique NameTCONS_00010877
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2839

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010877 ID=TCONS_00010877|Name=TCONS_00010877|organism=Clytia hemisphaerica|type=transcript|length=2839bp
AGAGTAAACTGATCAAATCcctgttttttattttagtaagtgaaaCCAAA
AAGCTTCGCGTCAAATGTTTGATGTCGGATGACCATTTTCAAGCTAGAAG
TTGACCAAACAACACTAAACACACTGTTTTGTTTTGGGTAAATGTTTATG
TTCGATATGATTTTATAGGGTGGATATCTAATTGTGTATGTATGTTCGAT
TTTGTGATGTTTATTGATTGTTATCGATAAGAATTGCTGTATTTGAAAGG
GAGAAATGGGAGTTCAgaggaaaatttttcgaaatgacCATTTTGCAGAA
GAATCGTTCCAAACAATGAATGAACTTAGGAAAGAGCAGAAGCTTTGCGA
TGTTGTATTAAAAGTGAATAAAAGAGAGTTTCATGTCCATAAAATTGTCC
TTGCTGCAACAAGTCCTTATTTGAAGGCCATGTTTACAAATGGTATGCTT
GAAAGTGTTCAAAAAGTTATCGATATTCATGGTTTAGATGAAAAAACAAT
GGAACTCCTCATTGATTTCTCGTACACAGGAACACTTGAGATTACACAAG
AAAATGTGCAACAAATCTTGGCCGGATCCTCATTATTAAGCATAGAAAGA
TTAAGGACTGCTTGTTCTAGATTCTTGCAAAAACAGCTAGATTCCATGAA
CTGCATCGGTATAAAAGAGTTTGCAACTGTTTACTCCTGTAAAGATTTAG
AAGAGACAGCTACCCAATATTTATATCAACATTTTCTTGCCACCATAAAC
CATGATGAATTCTTACAAATGAAATATGACCAAGTTATCAATCTACTAAG
CAGTGATAGAATACAGGTCAGAAGTGAAGAAGACGTTTACAATGCTCTTG
AAAATTGGCTTTATTATGACTTTGATAAAAGGTTACCTTTTGTACCTGAA
ATTCTGCGATGTATAAGAGTACCACTGCTTTCATTGGAATTTTTACAATA
CAAAGTGTTTGCTGCCTCATTCATTAAATCAGACACAAAATGCCAGCTAA
TACTTGCTCGTGTTATGAAtgaaaaccctgaaaaacttCCTGATTATCTA
TGTACACCAAGAGCTCTCCCACAATCAATTTATGCTATCGGAGGACGGAA
TAGTATGTATTGCCAACTCAGTACAGTAGAAAGATATGATATTTATTTGG
ATCAATGGCATGAAGAATGTAGTTTGAGCATTGCTAGGACAGCAGTAGGT
GCAGCAGTTTTAAATGGTATTTTGTATGCAGTTGCTGGTGAAAGAGCGGT
AAATGAACCTCATGATGATACACTCTATTTGCAATATGTTGAGGCTTACA
ATCCTATTTTACATCAATGGTTTGCTGTTAGTGAGTTGAGTATGCCTCGT
TCATTCGTTTCTGTAGTAGTTTGCAATGGAAAACTTTATGCTCTTGGAGG
AGAAGATAGGACTTCAAGTTATGATATTGTTGAATGTTATTCTCAAGTGA
AAAATCGCTGGACTCGTGTGAAATCAATGCAAAAACGAAGAGCAGGAGCA
GGTGTTACAGAACACGATGGAATGATTTATATCGCTGGTGGTTATGACCG
AACGGTTCATTCTGACCGCGCGTCCGTCGAGTGTTACTGTCCGGATAAAG
ATGAATGGAAGTTTGTTGCTGAGCTGGAAAAAGCAAGATCTGGTCTCAAT
CTATTATCTGTCGATAATTTCATTTATGCCATTGGAGGGCGGAATCGAGG
GAGTGatcaatattttgattattGTGAACGTTATAACCCAGCCACAATGC
AATGGACCGCTATATCCACTATGCTTTCACCAAGAGCGTGGTGTGGGGCG
GGAATTCTTGGGAATCATATTTTCGTTGTGGGTGGTTTCGATGGCGTGAA
TCGATTGAGTTCAGTTGAGACATATAACCCTGAAACGAATCGCTGGAAGC
GTGTTGCGAATATGAATTTTGCGAGGGCGGGTTGTGGCGTGGCTGTAATG
TGAATTAATGAACGTTTGTTTTTATTAACGAGGCAAAACTTTTTCGGGAA
CACCTTTTATAACTGTTTGTACTCACTTCGGTCTAACACACAAAGTACGT
GTTTAAATTCTCAAGGCTAGTGATTAAGTCTTCGTAATAATTAAAATTCT
TTTCACTTGGACCTAATAAAAGCATAAACCGCTTTGTTtctccaaatttt
tttcttatttttgtgtCGATGCTTTGAAGTTTaagtttggaaaaatgttt
tatatttaaacacccctgtctcgcagcccccGTTGAACTTTTTGtctcaa
tggggatgaaaatttctatcgaaatcccgatgggattagaaaatctatta
tttcCAAATCTAAAATACCAGTGGGGATGGCTTTAGAGTGCAGTATTTAC
CACTTAATTTCAGATGGAGATGCAATCGTAGGGCAATATTCCAGTGGGTT
TGAAATTTAAGGGTTTTTTTCCAGCGGGAAGaatgttttggccaattttt
ccagtggggctttgctgctactgggtctgtgacaccGGGGTTTATTTAAA
AGCGCTTTAAATTCGTTTGTTTATATGAGGATGGTAatgtaaatatttga
aaatagttTATTTTACAAGAGAGATTAGTTGATTTTCTatacatataaaa
aaaattatttttttcggtTTGTCATTTAGATTTTAATAAGCAATGCAATT
CTTTTTGTAACTAAattagttttatttttgtttaaaaaatattttagctt
tttttctaaGAGTGATTTTTAGTTCAGTTTTTCTCAGGCTTTGAAAAGAT
GCCTACTTTTTCGAAAAGATTTTATAGACTTaacctttaaatttttcaaa
gggAGTTTTAAGTGTGTTTAATTGCTCACTATCAGTTGC
Run BLAST on NCBI

protein sequence of TCONS_00010877-protein

>TCONS_00010877-protein ID=TCONS_00010877-protein|Name=TCONS_00010877-protein|organism=Clytia hemisphaerica|type=polypeptide|length=565bp
MGVQRKIFRNDHFAEESFQTMNELRKEQKLCDVVLKVNKREFHVHKIVLA
ATSPYLKAMFTNGMLESVQKVIDIHGLDEKTMELLIDFSYTGTLEITQEN
VQQILAGSSLLSIERLRTACSRFLQKQLDSMNCIGIKEFATVYSCKDLEE
TATQYLYQHFLATINHDEFLQMKYDQVINLLSSDRIQVRSEEDVYNALEN
WLYYDFDKRLPFVPEILRCIRVPLLSLEFLQYKVFAASFIKSDTKCQLIL
ARVMNENPEKLPDYLCTPRALPQSIYAIGGRNSMYCQLSTVERYDIYLDQ
WHEECSLSIARTAVGAAVLNGILYAVAGERAVNEPHDDTLYLQYVEAYNP
ILHQWFAVSELSMPRSFVSVVVCNGKLYALGGEDRTSSYDIVECYSQVKN
RWTRVKSMQKRRAGAGVTEHDGMIYIAGGYDRTVHSDRASVECYCPDKDE
WKFVAELEKARSGLNLLSVDNFIYAIGGRNRGSDQYFDYCERYNPATMQW
TAISTMLSPRAWCGAGILGNHIFVVGGFDGVNRLSSVETYNPETNRWKRV
ANMNFARAGCGVAVM
Run BLAST on NCBI

transcript from alignment at sc0000118:106886..111596+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010877 ID=TCONS_00010877|Name=TCONS_00010877|organism=Clytia hemisphaerica|type=transcript|length=4711bp|location=Sequence derived from alignment at sc0000118:106886..111596+ (Clytia hemisphaerica)
AGAGTAAACTGATCAAATCcctgttttttattttagtaagtgaaaCCAAA
AAGCTTCGCGTCAAATGTTTGATGTCGGATGACCATTTTCAAGCTAGAAG
TTGACCAAACAACACTAAACACACTGTTTTGTTTTGGGTAAATGTTTATG
TTCGATATGATTTTATAGGGTGGATATCTAATTGTGTATGTATGTTCGAT
TTTGTGATGTTTATTGATTGTTATCGATAAGAATTGCTGTATTTGAAAGG
GAGAAATGGGAGTTCAgaggaaaatttttcgaaatgacCATTTTGCAGAA
GAATCGTTCCAAACAATGAATGAACTTAGGAAAGAGCAGAAGCTTTGCGA
TGTTGTATTAAAAGTGAATAAAAGAGAGTTTCATGTCCATAAAATTGTCC
TTGCTGCAACAAGTCCTTATTTGAAGGCCATGTTTACAAATGGTATGCTT
GAAAGTGTTCAAAAAGTTATCGATATTCATGGTTTAGATGAAAAAACAAT
GGAACTCCTCATTGATTTCTCGTACACAGGAACACTTGAGATTACACAAG
AAAATGTGCAACAAATCTTGGCCGGATCCTCATTATTAAGCATAGAAAGA
TTAAGGACTGCTTGTTCTAGATTCTTGCAAAAACAGCTAGATTCCATGAA
CTGCATCGGTATAAAAGAGTTTGCAACTGTTTACTCCTGTAAAGATTTAG
AAGAGACAGCTACCCAATATTTATATCAACATTTTCTTGCCACCATAAAC
CATGATGAATTCTTACAAATGAAATATGACCAAGTTATCAATCTACTAAG
CAGTGATAGAATACAGGTCAGAAGTGAAGAAGACGTTTACAATGCTCTTG
AAAATTGGCTTTATTATGACTTTGATAAAAGGTTACCTTTTGTACCTGAA
ATTCTGCGATGTATAAGAGTACCACTGCTTTCATTGGAATTTTTACAATA
CAAAGTGTTTGCTGCCTCATTCATTAAATCAGACACAAAATGCCAGCTAA
TACTTGCTCGTGTTATGAAtgaaaaccctgaaaaacttCCTGATTATCTA
TGTACACCAAGAGCTCTCCCACAATCAATTTATGCTATCGGAGGACGGAA
TAGTATGTATTGCCAACTCAGTACAGTAGAAAGATATGATATTTATTTGG
ATCAATGGCATGAAGAATGTAGTTTGAGCATTGCTAGGACAGCAGTAGGT
GCAGCAGTTTTAAATGGTATTTTGTATGCAGTTGCTGGTGAAAGAGCGGT
AAATGAACCTCATGATGATACACTCTATTTGCAATATGTTGAGGCTTACA
ATCCTATTTTACATCAATGGTTTGCTGTTAGTGAGTTGAGTATGCCTCGT
TCATTCGTTTCTGTAGTAGTTTGCAATGGAAAACTTTATGCTCTTGGAGG
AGAAGATAGGACTTCAAGTTATGATATTGTTGAATGTTATTCTCAAGTGA
AAAATCGCTGGACTCGTGTGAAATCAATGCAAAAACGAAGAGCAGGAGCA
GGTGTTACAGAACACGATGGTAAGTTTTTTGTTATGAAAATTATCAttgc
aaaatttttttatcagaacaaaGTTATAGTATATAAATCACATTCCCTAT
tagtgggtgaacaatccaacacttggtgaattctgcttcacaatgatagg
aagagccgacaTCAAAGTAAGCAATTTGAGAACCAAAAAATACAACCCAG
TTTCAAATTAAGATTCatataaaaaagggaaaaaagtaGTTACAATATGC
agttataataaaaataagtatACACGTTGCAGGCATTTGATTGGgtttca
ttgatttttgaaattcatggtaaagacatctttttaaagcaaaCCTGATT
TAAGGCTCAGAGCTGGAACATTCTAGCTTAAGTTCGGAAACATTTACTAA
GACCTACCCTAATTATCATATCATAATGATTTTAAAAGGCTTTTCCTCTA
CAAGATAGTAAAAATATTTAAGTCTGAGTTCGAGTTCGAACCTTGTtgct
ttaaaaaaagtgtatttttctgaagatttttgcttttcaaaaaacaaagc
aTTTTTGTaggattttagaaaaatggagCTGTCAACACTGATAGCAGCAG
AAAGTTAAGTTTATTAGGTTAGCCTTGTTAACTCAATTTGTTTACACAGT
CACACgcattttcttttataagaactttggttgagggtgagcattattct
ttattttctattgttctaaacaatgggcctattgttttaaacccaaaatt
tcaccctgatattcttatagaagttattcttataaaagaaaaagcgtgta
atgcAATTTGGTAAATCAGCTAAATCCTTTTCATTTGCACACATGAAACG
TTNTAGAAgttcttcttataaaagaaaaagcgtctAATACAATTTGGTAA
ATCAGCTAAATCCTTTTCCTTTGCACACATGAAACGTTTTAAAACATGTA
AACTATTATCTTAAAATCTAATCGAATTAACCTTATCTGTAAAAAgcgtt
taaaaaatcttttattcaCTTATAATATTTCTAAATGCGCTAATGGCGAG
GTCAGATCATGGCATTAAAATGGAATCGCTCTTGAACGTGTTCGGAAAAT
GAAATGTCTTTTTAATGTCTACtgtaattaaaataattaagatttttgaa
CGGCTTAATGAGTATTTGTTTAATTAATTGACATATGTCATCTTTTGTTT
TTCaaccatttaaaaaaatcgTTTGGTTTTAAAAACTTATTAACAATTTC
CTTTCCGACAaatcttctctttttttcaCCCTTTCAACCGTTCTATTTAC
AAAGAAATGTGGTTATCTTTACGAATGACGTCTTTGTAGTATAACGAATT
AATTTTATTCGAAATTGAGGGTCATACCTACTCATGCTATACATCTTTCA
ATGCTAAAACTTTACCTTGAGAAAAACGAACTtgcctttcttctttctta
aGCAAGGAGTGAGAAAGAAATGGCGCCCTCTTCTACCGTCAGGTAGATAG
cttatcgaaagaggagccttcgggtcgcttccgactgcggtcgcagactt
actacttAAGCAATATTGTCATTTCCCTATTCAATATTTATCCCCATGTT
CTACGGAAACACTACCTATATTAACTTGTACAAGTTCCTCTATGATAAAA
TGGTActtgaaattaaattgatttcCGTTCACTTTTCTCTGATTGCTCAG
TTTAAAAACTTTACGATTCAACTAAGGCTTTCAAGGAGTAAATCGCTAAG
TTTTTACTTTTATAATGATTATTTAGTTGAACTGATTTGAATGATAATCT
TTAGTTTAAAAGGGAGTGTTTCACTACTAGAAGTTTTAGAATTTGTGCTA
ATTTTCCTCTTAAACCTTCTGTCTTTTTTCTATTTCCTCAGGAATGATTT
ATATCGCTGGTGGTTATGACCGAACGGTTCATTCTGACCGCGCGTCCGTC
GAGTGTTACTGTCCGGATAAAGATGAATGGAAGTTTGTTGCTGAGCTGGA
AAAAGCAAGATCTGGTCTCAATCTATTATCTGTCGATAATTTCATTTATG
CCATTGGAGGGCGGAATCGAGGGAGTGatcaatattttgattattGTGAA
CGTTATAACCCAGCCACAATGCAATGGACCGCTATATCCACTATGCTTTC
ACCAAGAGCGTGGTGTGGGGCGGGAATTCTTGGGAATCATATTTTCGTTG
TGGGTGGTTTCGATGGCGTGAATCGATTGAGTTCAGTTGAGACATATAAC
CCTGAAACGAATCGCTGGAAGCGTGTTGCGAATATGAATTTTGCGAGGGC
GGGTTGTGGCGTGGCTGTAATGTGAATTAATGAACGTTTGTTTTTATTAA
CGAGGCAAAACTTTTTCGGGAACACCTTTTATAACTGTTTGTACTCACTT
CGGTCTAACACACAAAGTACGTGTTTAAATTCTCAAGGCTAGTGATTAAG
TCTTCGTAATAATTAAAATTCTTTTCACTTGGACCTAATAAAAGCATAAA
CCGCTTTGTTtctccaaatttttttcttatttttgtgtCGATGCTTTGAA
GTTTaagtttggaaaaatgttttatatttaaacacccctgtctcgcagcc
cccGTTGAACTTTTTGtctcaatggggatgaaaatttctatcgaaatccc
gatgggattagaaaatctattatttcCAAATCTAAAATACCAGTGGGGAT
GGCTTTAGAGTGCAGTATTTACCACTTAATTTCAGATGGAGATGCAATCG
TAGGGCAATATTCCAGTGGGTTTGAAATTTAAGGGTTTTTTTCCAGCGGG
AAGaatgttttggccaatttttccagtggggctttgctgctactgggtct
gtgacaccGGGGTTTATTTAAAAGCGCTTTAAATTCGTTTGTTTATATGA
GGATGGTAatgtaaatatttgaaaatagttTATTTTACAAGAGAGATTAG
TTGATTTTCTatacatataaaaaaaattatttttttcggtTTGTCATTTA
GATTTTAATAAGCAATGCAATTCTTTTTGTAACTAAattagttttatttt
tgtttaaaaaatattttagctttttttctaaGAGTGATTTTTAGTTCAGT
TTTTCTCAGGCTTTGAAAAGATGCCTACTTTTTCGAAAAGATTTTATAGA
CTTaacctttaaatttttcaaagggAGTTTTAAGTGTGTTTAATTGCTCA
CTATCAGTTGC

Coding sequence (CDS) from alignment at sc0000118:106886..111596+

>TCONS_00010877 ID=TCONS_00010877|Name=TCONS_00010877|organism=Clytia hemisphaerica|type=CDS|length=3396bp|location=Sequence derived from alignment at sc0000118:106886..111596+ (Clytia hemisphaerica)
ATGGGAGTTCAgaggaaaatttttcgaaatgacCATTTTGCAGAAGAATC
GTTCCAAACAATGAATGAACTTAGGAAAGAGCAGAAGCTTTGCGATGTTG
TATTAAAAGTGAATAAAAGAGAGTTTCATGTCCATAAAATTGTCCTTGCT
GCAACAAGTCCTTATTTGAAGGCCATGTTTACAAATGGTATGCTTGAAAG
TGTTCAAAAAGTTATCGATATTCATGGTTTAGATGAAAAAACAATGGAAC
TCCTCATTGATTTCTCGTACACAGGAACACTTGAGATTACACAAGAAAAT
GTGCAACAAATCTTGGCCGGATCCTCATTATTAAGCATAGAAAGATTAAG
GACTGCTTGTTCTAGATTCTTGCAAAAACAGCTAGATTCCATGAACTGCA
TCGGTATAAAAGAGTTTGCAACTGTTTACTCCTGTAAAGATTTAGAAGAG
ACAGCTACCCAATATTTATATCAACATTTTCTTGCCACCATAAACCATGA
TGAATTCTTACAAATGAAATATGACCAAGTTATCAATCTACTAAGCAGTG
ATAGAATACAGGTCAGAAGTGAAGAAGACGTTTACAATGCTCTTGAAAAT
TGGCTTTATTATGACTTTGATAAAAGGTTACCTTTTGTACCTGAAATTCT
GCGATGTATAAGAGTACCACTGCTTTCATTGGAATTTTTACAATACAAAG
TGTTTGCTGCCTCATTCATTAAATCAGACACAAAATGCCAGCTAATACTT
GCTCGTGTTATGAAtgaaaaccctgaaaaacttCCTGATTATCTATGTAC
ACCAAGAGCTCTCCCACAATCAATTTATGCTATCGGAGGACGGAATAGTA
TGTATTGCCAACTCAGTACAGTAGAAAGATATGATATTTATTTGGATCAA
TGGCATGAAGAATGTAGTTTGAGCATTGCTAGGACAGCAGTAGGTGCAGC
AGTTTTAAATGGTATTTTGTATGCAGTTGCTGGTGAAAGAGCGGTAAATG
AACCTCATGATGATACACTCTATTTGCAATATGTTGAGGCTTACAATCCT
ATTTTACATCAATGGTTTGCTGTTAGTGAGTTGAGTATGCCTCGTTCATT
CGTTTCTGTAGTAGTTTGCAATGGAAAACTTTATGCTCTTGGAGGAGAAG
ATAGGACTTCAAGTTATGATATTGTTGAATGTTATTCTCAAGTGAAAAAT
CGCTGGACTCGTGTGAAATCAATGCAAAAACGAAGAGCAGGAGCAGGTGT
TACAGAACACGATGGAATGATTTATATCGCTGGTGGTTATGACCGAACGG
TTCATTCTGACCGCGCGTCCGTCGAGTGTTACTGTCCGGATAAAGATGAA
TGGAAGTTTGTTGCTGAGCTGGAAAAAGCAAGATCTGGTCTCAATCTATT
ATCTGTCGATAATTTCATTTATGCCATTGGAGGGCGGAATCGAGGGAGTG
atcaatattttgattattGTGAACGTTATAACCCAGCCACAATGCAATGG
ACCGCTATATCCACTATGCTTTCACCAAGAGCGTGGTGTGGGGCGGGAAT
TCTTGGGAATCATATTTTCGTTGTGGGTGGTTTCGATGGCGTGAATCGAT
TGAGTTCAGTTGAGACATATAACCCTGAAACGAATCGCTGGAAGCGTGTT
GCGAATATGAATTTTGCGAGGGCGGGTTGTGGCGTGGCTGTAATGTGAAT
GGGAGTTCAgaggaaaatttttcgaaatgacCATTTTGCAGAAGAATCGT
TCCAAACAATGAATGAACTTAGGAAAGAGCAGAAGCTTTGCGATGTTGTA
TTAAAAGTGAATAAAAGAGAGTTTCATGTCCATAAAATTGTCCTTGCTGC
AACAAGTCCTTATTTGAAGGCCATGTTTACAAATGGTATGCTTGAAAGTG
TTCAAAAAGTTATCGATATTCATGGTTTAGATGAAAAAACAATGGAACTC
CTCATTGATTTCTCGTACACAGGAACACTTGAGATTACACAAGAAAATGT
GCAACAAATCTTGGCCGGATCCTCATTATTAAGCATAGAAAGATTAAGGA
CTGCTTGTTCTAGATTCTTGCAAAAACAGCTAGATTCCATGAACTGCATC
GGTATAAAAGAGTTTGCAACTGTTTACTCCTGTAAAGATTTAGAAGAGAC
AGCTACCCAATATTTATATCAACATTTTCTTGCCACCATAAACCATGATG
AATTCTTACAAATGAAATATGACCAAGTTATCAATCTACTAAGCAGTGAT
AGAATACAGGTCAGAAGTGAAGAAGACGTTTACAATGCTCTTGAAAATTG
GCTTTATTATGACTTTGATAAAAGGTTACCTTTTGTACCTGAAATTCTGC
GATGTATAAGAGTACCACTGCTTTCATTGGAATTTTTACAATACAAAGTG
TTTGCTGCCTCATTCATTAAATCAGACACAAAATGCCAGCTAATACTTGC
TCGTGTTATGAAtgaaaaccctgaaaaacttCCTGATTATCTATGTACAC
CAAGAGCTCTCCCACAATCAATTTATGCTATCGGAGGACGGAATAGTATG
TATTGCCAACTCAGTACAGTAGAAAGATATGATATTTATTTGGATCAATG
GCATGAAGAATGTAGTTTGAGCATTGCTAGGACAGCAGTAGGTGCAGCAG
TTTTAAATGGTATTTTGTATGCAGTTGCTGGTGAAAGAGCGGTAAATGAA
CCTCATGATGATACACTCTATTTGCAATATGTTGAGGCTTACAATCCTAT
TTTACATCAATGGTTTGCTGTTAGTGAGTTGAGTATGCCTCGTTCATTCG
TTTCTGTAGTAGTTTGCAATGGAAAACTTTATGCTCTTGGAGGAGAAGAT
AGGACTTCAAGTTATGATATTGTTGAATGTTATTCTCAAGTGAAAAATCG
CTGGACTCGTGTGAAATCAATGCAAAAACGAAGAGCAGGAGCAGGTGTTA
CAGAACACGATGGAATGATTTATATCGCTGGTGGTTATGACCGAACGGTT
CATTCTGACCGCGCGTCCGTCGAGTGTTACTGTCCGGATAAAGATGAATG
GAAGTTTGTTGCTGAGCTGGAAAAAGCAAGATCTGGTCTCAATCTATTAT
CTGTCGATAATTTCATTTATGCCATTGGAGGGCGGAATCGAGGGAGTGat
caatattttgattattGTGAACGTTATAACCCAGCCACAATGCAATGGAC
CGCTATATCCACTATGCTTTCACCAAGAGCGTGGTGTGGGGCGGGAATTC
TTGGGAATCATATTTTCGTTGTGGGTGGTTTCGATGGCGTGAATCGATTG
AGTTCAGTTGAGACATATAACCCTGAAACGAATCGCTGGAAGCGTGTTGC
GAATATGAATTTTGCGAGGGCGGGTTGTGGCGTGGCTGTAATGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006109XLOC_006109Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010877-proteinTCONS_00010877-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010877-exon-sc0000118-1491911889:106886..108404TCONS_00010877-exon-sc0000118-1491911889:106886..108404Clytia hemisphaericaexon
TCONS_00010877-exon-sc0000118-1510915933:106886..108404TCONS_00010877-exon-sc0000118-1510915933:106886..108404Clytia hemisphaericaexon
TCONS_00010877-exon-sc0000118-1575043694:106886..108404TCONS_00010877-exon-sc0000118-1575043694:106886..108404Clytia hemisphaericaexon
TCONS_00010877-exon-sc0000118-1491911889:110277..111596TCONS_00010877-exon-sc0000118-1491911889:110277..111596Clytia hemisphaericaexon
TCONS_00010877-exon-sc0000118-1510915933:110277..111596TCONS_00010877-exon-sc0000118-1510915933:110277..111596Clytia hemisphaericaexon
TCONS_00010877-exon-sc0000118-1575043694:110277..111596TCONS_00010877-exon-sc0000118-1575043694:110277..111596Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000118supercontigsc0000118:106886..111596 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.17183	1.8811	1.84811	1.65866	3.6565	2.42941	6.27819	6.62443	6.00202	5.53361	6.31407	6.0732	8.23587	7.55611	6.46492	7.44751	6.07597	6.84006	6.98347	5.402	7.99508	8.34018	5.72277	6.25746	7.57473	9.15156	7.17682	5.03382	5.56975	5.99504
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000210BTB/POZ_dom
IPR011705BACK
IPR006652Kelch_1
IPR017096BTB-kelch_protein
IPR015915Kelch-typ_b-propeller
IPR011333SKP1/BTB/POZ
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00010877 vs. Swiss-Prot (Human)
Match: KLH20 (Kelch-like protein 20 OS=Homo sapiens GN=KLHL20 PE=1 SV=4)

HSP 1 Score: 406.371 bits (1043), Expect = 5.052e-129
Identity = 215/574 (37.46%), Postives = 332/574 (57.84%), Query Frame = 1 
Query:  268 RKIFRNDHFAEESFQTMNELRKEQKLCDVVLKVNKREFHVHKIVLAATSPYLKAMFTNGMLESVQKVIDIHGLDEKTMELLIDFSYTGTLEITQENVQQILAGSSLLSIERLRTACSRFLQKQLDSMNCIGIKEFATVYSCKDLEETATQYLYQHFLATINHDEFLQMKYDQVINLLSSDRIQVRSEEDVYNALENWLYYDFDKRLPFVPEILRCIRVPLLSLEFLQYKVFAASFIKSDTKCQLILARVMNE--NPEKLPDYLCTPRALPQS-------IYAIGGRNSMYCQ---LSTVERYDIYLDQWHEECSLSIARTAVGAAVLNGILYAVAGERAVNEPHDDTLYLQYVEAYNPILHQWFA-VSELSMPRSFVSVVVCNGKLYALGGEDRTSSYDIVECYSQVKNRWTRVKSMQKRRAGAGVTEHDGMIYIAGGYDRTVHSDRASVECYCPDKDEWKFVAELEKARSGLNLLSVDNFIYAIGGRNRGSDQYFDYCERYNPATMQWTAISTMLSPRAWCGAGILGNHIFVVGGFDGVNRLSSVETYNPETNRWKRVANMNFARAGCGVAVM 1950
            R  + +D    ++ + +N LRK ++LCDVVL V  ++ + H+++L+A SPY +AMFT  + ES Q  + I  +DE+ MELLIDF+YT  + + + NVQ +L  + LL +  ++ AC  FL++QLD  NC+GI+ FA  +SC++L   A ++   +F   +  +EF+ +  +Q+I+++SSD + VRSEE V+NA+  W+ Y   +R P +P++L+ +R+PLLS +FL   V +   IKSD +C+ ++    N    P++ P  +  PR  P+        ++A+GG    +C    +S+VERYD   ++W    S+S  R  VG +VL+ +LYAV G       HD + YL  VE Y+P  +QW + V+  S  R+ V V V  G LYA+GG+D  S  +IVE Y   +N+WTRV SM  RR G  V    G +Y  GG D T  S   +VE Y P ++ W  +A +   R  L      + IYA+GGR+  ++      ERYNP T QW+ +  M S R+  G  ++   +  VGGFDG   L ++E ++P+ N W+    MN+ R G GV V+
Sbjct:   42 RMPYISDKHPRQTLEVINLLRKHRELCDVVLVVGAKKIYAHRVILSACSPYFRAMFTGELAESRQTEVVIRDIDERAMELLIDFAYTSQITVEEGNVQTLLPAACLLQLAEIQEACCEFLKRQLDPSNCLGIRAFADTHSCRELLRIADKFTQHNFQEVMESEEFMLLPANQLIDIISSDELNVRSEEQVFNAVMAWVKYSIQERRPQLPQVLQHVRLPLLSPKFLVGTVGSDPLIKSDEECRDLVDEAKNYLLLPQERP-LMQGPRTRPRKPIRCGEVLFAVGG----WCSGDAISSVERYDPQTNEWRMVASMSKRRCGVGVSVLDDLLYAVGG-------HDGSSYLNSVERYDPKTNQWSSDVAPTSTCRTSVGVAVLGGFLYAVGGQDGVSCLNIVERYDPKENKWTRVASMSTRRLGVAVAVLGGFLYAVGGSDGT--SPLNTVERYNPQENRWHTIAPMGTRRKHLGCAVYQDMIYAVGGRDDTTE--LSSAERYNPRTNQWSPVVAMTSRRSGVGLAVVNGQLMAVGGFDGTTYLKTIEVFDPDANTWRLYGGMNYRRLGGGVGVI 599
The following BLAST results are available for this feature:
BLAST of TCONS_00010877 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KLH205.052e-12937.46Kelch-like protein 20 OS=Homo sapiens GN=KLHL20 PE... [more]
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