TCONS_00010873 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010873
Unique NameTCONS_00010873
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4288

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010873 ID=TCONS_00010873|Name=TCONS_00010873|organism=Clytia hemisphaerica|type=transcript|length=4288bp
CCTGAAGAAGATGTGTTAGCAAGtaagaaagaaaatatcaatAACCTTCT
TACCAATGCTGATGGTAAGAATCCAGAATCATTGGAGCAGAATCTGATGA
TGAACCAAGATTCAGCTAAAGGAAGCATTGTTCCGATGTCTGTATCCTTT
GGTGGTTTCAAATCACTCGACGATGCTGTGTTGCAATCGAATATACCAGC
TGAAGTTGATTATCTGAAAGGGAGTTATAATGGGAACAAGGATTTCATGA
AGAGCTTGCAGACGCCAACAGATGGACCTGAAGAGCAAGCAGTTAGTCGA
CAATTAGCAGGGGTCGAAGGACAGAAGACAGAATCGTTGTCCAAATTTAT
AGAGAGTAATGATCCACAGGGGGAATTATCAAAGATCGGTGATTCCTTGA
CGATGTCAAAAATTGAACCAGGAGAGCTTCAAACTGGGGAATCTTCAAAG
ATTAGTGATTCCTTAACCACATCTAAACTTGATTCAGGTGACCCTTCAAA
AATGATGGATTCTATTTTAGAACCAATCAAGACATCAGCGAAATATTCAC
CAACAAGTTTTATGAATACAGAAACAGCCATTAAAGGTGACCCTGCCTTC
TCACAAGCCGTAACCCAAGACaatttactggacaactcagtCAAAGAAGC
TATAAATgcagaaatgaaaaaagatattgaTCTAGCCACGGGTGAAGAGA
AACAAACGGATACACGTTCGTCTGCTTATGAATATAAACCCAAggaatct
tctttttcaaatgtCAAGGAATTCCCTTCTTCTATGGTGGGTGATATCGC
GACTGTAGCGGAGGCGGTTGATAAAGCAGCCGTCAGTCGCTCACATAAAA
TGAAATATAAGAAACAGCGCGAGAAAGTTGGGAAGTCCAAGAAACTAGTC
AAACAGAGGTCTTCGAATAAACATCATAAAACATCGACACGTTCGAAATC
CTTACACTCGCTGCCGACAGTTCCAAAAGTCAAAACAACAGCTCAACAAA
AAGTAGAGGAATCCCCGAAACAAATGACAGGGGAAGCACCATCTATAGAA
GAGCAGCATGTGATTCCCCAATTATCCGATTCCCTGGACGTCAATACACA
TCCTTCGGCACTGACCGCGAGTGAACAGAATCTGATCGCGTCTATCGACC
GCGCGGCCCGAAAGAAGGACGTGGCGAACGAAATGGTTAACCGTATCATG
ATGCCGACTAAAAGTGATCCTTTCTCAGACCAAGCTCTCACTCCACCTGA
ACAACTCCTCGACATGCTCTCCAATGGAAAATTCAACGACCCCTTACCTG
AAAGCGTACTCGACCGCTTATCCAATCTTGATCCGAACAAAGCTATGTTA
CCTGATTCAAACGCTTTCATgcaaccaaaacaaaaaagccCTACTTCAGG
TTTAATGCAAGTTGGGTCTGAATTACTACCAGTCAAAAGCGTCGCTTTAA
ACCAGCCGCAAGTTACACCACAACCGCTTCTAGACACAAGAGAGTTAGCG
AGAGCTGAgaaacaaatgaaaacaaaccCATATTACCTAGCCCAGAATAA
CATGCTGTTAGACGCAAACAATTTCAAAAGCATGCAAGATCTTTCTAATA
TTGGAGAAGCGATGTTTTCTAAGAACGTTATCGACTTAAAACAGCCGATG
ATGATGGGCGGAAACGAATTGGCTGAGGGTGGTTTTAATGATAACACCCT
TTCTTTCGGGGCGTCATTAGGTGAACCGTCTTCCACAAGTAGCACGGCAG
TTGCAAGAAACCAGATGAATAATAATAAAAACCTTCAATCGGTTACCGGT
AAAACAAGATGTCCCAATTGCGTCACCGGTGGACAATATGGTAGCCAAGC
TGCAGGATTTTCTCCACAGCGTTTACTACACAAAGAATCCCACTTTGTAC
ATAATGATATCGATCCTTTAGTGTTGGAGCAGATCCGACATCTACCGACA
GTGAATATGAAGAAATTGATAGAAACACACAGGAAGAAGACTGGACACAA
CAAACACAAAGGGAAAACAACTTTCCAAGATGCAATGTCTGATACGAGTG
TCTCACATAACACGGACGATGAATTCGTACCTGAGAAAATTGTCACTCTT
CCTGAAGAGCACGTCAATCACGGGTACGCAGTTTGCAAGTATGGACCTTG
TTTGAATGGAGGTGTTTGTACAGCGCATCCAGATAAATATTATTGCAGTT
GTTTGCCTGGTTGGATCGGAACCAATTGTGAACGACGGAACGCGTGTTTT
CCGAATCCATGTCATTACGGAATTTGTTCACCGAATATGGACGGGTTCAC
ATGCACGTGCAAAGCTGGATTCAAAGGGAATCTCTGTAATGTACTGGATC
ATTGCCATCCGAATCCATGCCATAACAACGGTTTGTGTACAGAAACACAA
CATGGTGTACAATGTGAATGTTCACCTGGTTTCAAGGGAAGGCTCTGTGA
AATGGAATCAAAATGCGAGCCGATCAATCCATGCTTGAATGGAGGGACGT
GTCGAGAATTTGTGGATCATTATTACTGCGCATGTCCGTTGAGTTTCCGA
GGTGTTAATTGTGAAGATTACATCAGCCCGACAAAGCCACCGCCTACCAT
TCCATTGAAACAAGTTGGTCCACAGGCTATTCCCGCCCCAATGAACGCCC
CAAATAGTGACATCCGTGATGTTTTCACATACCGGTCTACGGATCAATAC
GGAAATCCGTATTCGGAAACCCACGAAGAGATACGGAAAGGGCCGCAAGG
GTTAGTAAACCCAGGCGCTAGTTTAGTTCCGCATCCAGTTGCGCTTGCTG
CAATGAATGAAGCTCCAGGTACCCATTTTGTCGGAGCACCGAATCTTGCA
GAACACGGTGACGTCATCATGCATTCATCCCGGGAAGACGATAAAGCGGT
TGTCAGTACATCAACAAGCGAAGACGAAATTAAAAATCTTCCGGAAAACA
TCAAAGATGACCGGTATCAAACACATTTCGTAGAAGTTGATAAGGATAAT
GAAGGTCATGAATACAAACATAAATCATTAAGTCATAACCATCTCCATGT
GGGTGAATCAGTGGGCGTTGGTGAATACGCCCAACAAAAACACGCCCCTA
ATAATGATGAAGAGGCGGGGAAAGTGATTTCGGATGTAGAAAAACATCAT
GAAGAAATAAAGGAGAATTCGCATCAGCAACATGACCACGATGAACACAT
TTCAAACGAAAAACACGTCCCACAGAATGTTTTTGTAGATCATTCATACC
TCGATTTACCACACCACGCTCGTCAACATGAACAATCgagcaaaacgttc
gaaacaaaacaaactatCGAGGCACAAGCAAGCGAAAGATCAAAACTCGA
TCGACCAGATGCAGAAACATCAGAAATGAGCAAACAGAATTTAAATCGAA
ATGGTAGCCCGAGTAGTGATGATGATAATAAAAGCAATATCAAAACAATA
GGGGACATGTTAAAAATGTTTGACCAAGCTACAAAAACTCTTTCTACAAA
GATCATTAAAAGTGCTAATAAAGTCATGCTCAGAGAGGGAAAAGCACCTT
ACATACCACAAGTAGAAAAGTCGGGAAAATCAAACAGCAATCATCAATCC
CGATCGGGACAAATCGGGAACGCAACACAATCCCCGTTTTCAgaaatgaa
acattttatgCAGAATTTATATAATTTAACCAATAAAATCACAAACATTA
ACAACGCCAAATCGGGTGTTGGGGCGTCGATGAAGGGCGTTAAGAAACAC
GCCCTAGGCGCTACTGACGATCTATACAAACATTTTACAGACCATCAGAA
AAATGCTTATACAAGCTGGAGACGGCAAGCATTGATCAACTACCATGCCC
GTAATCCGGGAAAACCGGTTCCCCGCAATACGGTCTCTTTGTCCGAGAAT
TCATTGTGTCCGAAATTCTGCAGGTTATTTTGTGATCCGTGGTGCGTGAA
GATTGGATGTTGTAAACTTTCACAGGAGAAGTTGAACATTTATAAAGAGA
TAGAGGAAAAGCAAGAagcacatttaaaaaatacgAAACCGTCTGGACTT
TTGTTGCCCGATGAAGGTAGGAAGAAGGCTTGAAATAGTGtatatatacc
ctggacaaagtttCGCGATCacggtgaagaaaaaaagtttttttaatgtg
gtaccctaatggtagcctAGATATCTAAGCCAGTTTTCAGTCACTTGCTA
TAAAATATGAaagttaagttgtgactgaaatACTGTTATTCAGCGCTAAC
TTAAATTTCACggatataaaaaaatcattaaagcacCG
Run BLAST on NCBI

transcript from alignment at sc0000118:66228..74995+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010873 ID=TCONS_00010873|Name=TCONS_00010873|organism=Clytia hemisphaerica|type=transcript|length=8768bp|location=Sequence derived from alignment at sc0000118:66228..74995+ (Clytia hemisphaerica)
CCTGAAGAAGATGTGTTAGCAAGtaagaaagaaaatatcaatAACCTTCT
TACCAATGCTGATGGTAAGAATCCAGAATCATTGGAGCAGAATCTGATGA
TGAACCAAGATTCAGCTAAAGGAAGCATTGTTCCGATGTCTGTATCCTTT
GGTGGTTTCAAATCACTCGACGATGCTGTGTTGCAATCGAATATACCAGC
TGAAGTTGATTATCTGAAAGGGAGTTATAATGGGAACAAGGATTTCATGA
AGAGCTTGCAGACGCCAACAGATGGACCTGAAGAGCAAGCAGTTAGTCGA
CAATTAGCAGGGGTCGAAGGACAGAAGACAGAATCGTTGTCCAAATTTAT
AGAGAGTAATGATCCACAGGGGGAATTATCAAAGATCGGTGATTCCTTGA
CGATGTCAAAAATTGAACCAGGAGAGCTTCAAACTGGGGAATCTTCAAAG
ATTAGTGATTCCTTAACCACATCTAAACTTGATTCAGGTGACCCTTCAAA
AATGATGGATTCTATTTTAGAACCAATCAAGACATCAGCGAAATATTCAC
CAACAAGTTTTATGAATACAGAAACAGCCATTAAAGGTGACCCTGCCTTC
TCACAAGCCGTAACCCAAGACaatttactggacaactcagtCAAAGAAGC
TATAAATgcagaaatgaaaaaagatattgaTCTAGCCACGGGTGAAGAGA
AACAAACGGATACACGTTCGTCTGCTTATGAATATAAACCCAAggaatct
tctttttcaaatgtCAAGGAATTCCCTTCTTCTATGGTGGGTGATATCGC
GACTGTAGCGGAGGCGGTTGATAAAGCAGCCGTCAGTCGCTCACATAAAA
TGAAATATAAGAAACAGCGCGAGAAAGTTGGGAAGTCCAAGAAACTAGTC
AAACAGAGGTCTTCGAATAAACATCATAAAACATCGACACGTTCGAAATC
CTTACACTCGCTGCCGACAGTTCCAAAAGTCAAAACAACAGCTCAACAAA
AAGTAGAGGAATCCCCGAAACAAATGACAGGGGAAGCACCATCTATAGAA
GAGCAGCATGTGATTCCCCAATTATCCGATTCCCTGGACGTCAATACACA
TCCTTCGGCACTGACCGCGAGTGAACAGAATCTGATCGCGTCTATCGACC
GCGCGGCCCGAAAGAAGGACGTGGCGAACGAAATGGTTAACCGTATCATG
ATGCCGACTAAAAGTGATCCTTTCTCAGACCAAGCTCTCACTCCACCTGA
ACAACTCCTCGACATGCTCTCCAATGGAAAATTCAACGACCCCTTACCTG
AAAGCGTACTCGACCGCTTATCCAATCTTGATCCGAACAAAGCTATGTTA
CCTGATTCAAACGCTTTCATgcaaccaaaacaaaaaagccCTACTTCAGG
TTTAATGCAAGTTGGGTCTGAATTACTACCAGTCAAAAGCGTCGCTTTAA
ACCAGCCGCAAGTTACACCACAACCGCTTCTAGACACAAGAGAGTTAGCG
AGAGCTGAgaaacaaatgaaaacaaaccCATATTACCTAGCCCAGAATAA
CATGCTGTTAGACGCAAACAATTTCAAAAGCATGCAAGATCTTTCTAATA
TTGGAGAAGCGATGTTTTCTAAGAACGTTATCGACTTAAAACAGCCGATG
ATGATGGGCGGAAACGAATTGGCTGAGGGTGGTTTTAATGATAACACCCT
TTCTTTCGGGGCGTCATTAGGTGAACCGTCTTCCACAAGTAGCACGGCAG
TTGCAAGAAACCAGATGAATAATAATAAAAACCTTCAATCGGTTACCGGT
AAAACAAGATGTCCCAATTGCGTCACCGGTGGACAATATGGTAGCCAAGC
TGCAGGATTTTCTCCACAGCGTTTACTACACAAAGAATCCCACTTTGTAC
ATAATGATATCGATCCTTTAGTGTTGGAGCAGATCCGACATCTACCGACA
GTGAATATGAAGAAATTGATAGAAACACACAGGAAGAAGACTGGACACAA
CAAACACAAAGGGAAAACAACTTTCCAAGATGCAATGTCTGATACGAGTG
TCTCACATAACACGGACGATGAATTCGTACCTGAGAAAATTGTCACTCTT
CCTGAAGAGCACGTCAATCGTAAGTCGGTGTTCTTTAAGACCTATTCGCA
CTTTGATACAGTATAGAAAACGCCCTTGCCGCGCAGCCCTGGCTTACTAT
TCCCCATAAGTAGTGAGTTAAAAAttcctatcgaaatcccaatagaatag
ggatagaaattttattgttcccaGCTCAAAAAAcccaatggggatggttt
tggagtgcaattttttatatcaaaattttgaatggggataaAATGAAAGT
CCATTTTCAGTTGGCTGAAACtgtagggtatttttttcaaccggatatga
aattttggtcaatttttttagTTACCGGGTCTGTAACACAGAGAGGTGTG
TTCGTAGCCTCTCTAATCAGTAACCAGACCTTACAACATAACTGTGACTT
TGACGCTGACGTTGACGGTATCGACCACGTctttaaataaaacaaaaatt
tcacatATTCACAGTTTTCATATTATTAAACTAAAGaacgtttttctttt
gaatggTAGGAAAAAGTTTCCATAAAAAGTAGGCCCTTGTTAAACATATT
TATTTCTGAATGCTACCTTTCGGCTAACCATTTTTGGTCCTCAATCACAA
ACAACTATCCATACAGACTTTCGAACGTCACGTGATCTATTTTTAGCAAT
CTGATTCGTCGAAAACTGTGACGTAACGTATGAAAATCCATCCCATCTCA
CTAGTCTGTCCAGCCCGCCTCAATATAAACAGCACCTAATGGATTCTTTT
GTTCCGATTCTCAAAATACCAGCCCCTGCCCAACTGGCACAcgacgtcgt
ttcaacgttcatttaacgttatatggacgttgtgaacgttagataaacgt
ctaaaaaacgttgtgtgccagctgggtgacTATAAGCAAGAAATGTACCC
ATATGGCTATAGGcaatttcacagtcgcaaagcgtaatgggtaatcagga
ccactgtgCGCTAACGACGatttactattggtccaaagttttgaaatttt
tttaagatttttgcgtcCAGCCAACGGGAGGCCGTTAAAGATGCGCAaac
agtcctgattacccatgatccatttcgactgtgaaatggcctataagCAA
GAAATGTACCCATATGAACCATCACTgacttaaaaaaactttattctcTT
TGTTCACAGACGGGTACGCAGTTTGCAAGTATGGACCTTGTTTGAATGGA
GGTGTTTGTACAGCGCATCCAGATAAATATTATTGCAGTTGTTTGCCTGG
TTGGATCGGAACCAATTGTGAACGTAAGAAGCTCATTTGATGAAATAAAT
TTGTTCTTAGTATGCAATCTCTTAATCACTAGAATCTGATGGGTTCTTGA
GATTGCAATCTTCTCCATATTTGCACNGCTTAGTATGTAGTCTCTTAATC
ACTAGAATCTGATGGGTTCTTGAGATTACAATCTTCTCCATATTTGCACG
ATTCATTTATATTATATTTGCTTATTCCCGAGGTATCATAGAAAATCTTT
CTAGCTAGCAACTATTGATTCAATTTCTGAATTAATTCACTtgtggtgta
aatgcatcgagatcGCTGGAGGATAGAAAGCCCATGTTCCGAATCACGAG
ACCCTAGGTTTGGCTCCCACTACATAATAGTCTAGAACATTTCACATTCT
CTTAAAGGACGGAACGCGTGTTTTCCGAATCCATGTCATTACGGAATTTG
TTCACCGAATATGGACGGGTTCACATGCACGTGCAAAGCTGGATTCAAAG
GGAATCTCTGTAATGGTGAgttctttttttctgttttacgTTTTGACGAT
CACGTGGAACATTCATTTTCTCGGCCGAATACCTAATTACACGAATCTTA
CTAGTCAAGTATTCAACGGCTTtaaaattaacacgcaaaaaaacaacacg
aattttatttgctttttcaaggacaccacagctggttttaattaaaggGG
TTTTAAATAACACGAAATTTCTTAATTCGTGTTAATTACATGTCTACTta
ttttcgtgtaataaggtaactTTAGAGTTTCATTTCATGAGCAAATTTTC
TCAGTCAAAACGTTCTCTTTTCAAATTTGGGAATAGAGTTGAACTGTCTT
TGACAAGTTATTTTATTGGCTAATAGTGATTTTTGATCATGTTTTGTTTA
GTTACGTAATAATAATTACATATATAACATAACATATATAACATGAAAGA
CCTCTATTTTCACGGCAAATAACTTCCAAGCTTGAATTCCATCACACCAG
CtaatcttttaaaatgtttaataACCTGATGGATCAGGTCGGGTTATCGT
GGTACATTGGTATAACCCGGGCAGTGAAATCCACTGTCCTGCTTCTTACC
CAAACTAGAATTATGCAACACCCATCCACTGTCCCGTTTCGTACTCAAAC
TAGAATTATACCACACCCGTCCACTGTGGATGGGCGTAGTgctgttccaa
ttttttttgcgaagcgggacagtcaAGAAAAGTCGTTTTGGGTGCGATGC
GGGACAGTCAGAAGTGACGGAGAATtgttttggtctgtaaaatttatgtt
GGGCACGAAGTTGCTTTCAGTGTCCGGGTCATACCCATGTACCACGCTAA
CCCGACCTGATCACAACAGTCAAACTAACAAGTCACTGTTTTGCAAACTA
AGATCAAAATAATAATTAGTGCAGTGAAAATAATTCCACTCAATCATTTC
TTCCTACAGTACTGGATCATTGCCATCCGAATCCATGCCATAACAACGGT
TTGTGTACAGAAACACAACATGGTGTACAATGTGAATGTTCACCTGGTTT
CAAGGGAAGGCTCTGTGAAAGTAAGTATCATCTTGTTCAATCCCTCTAAT
TTAGCCAACAACCAAGCGGTTACATTAAGACTCTCGCTGTAGCCAAGTTG
AAACCGTAGATAAGTCGGGTCAAAAACTTAAAAGTAAGATCTGACCGTAC
TGAATATTTTCAAGATTCCGATTTCCAACCTAATTTGGATTGTATTCGTT
TGGATTNTTGTACGTGCAAAGCTGGATTCAAAGGGAATCTCTGTAATGGT
GAGTTCTTTTTCTGTTTTACGTTTTGACGATCACGTGGAACATTCATTTT
CTCGGCCGAATACCTAATTACACGAATCTTACTAGTCAAGTATTCAACGG
TTTtaaaattaacacgcaaaaaaacaacacgaattttatttgctttttca
aggacaccacagctggttttaattaaaggGGTTTTAAATAACACGAAATT
TCTTAATTCGTGTTAATTACATGTCTACTtattttcgtgtaataaggtaa
ctTTAGAGTTTCATTTCATGAGCAAATTTTCTCAGTCAAAACGTTCTCTT
TTCAAATTTGGGAATAGAGTTGAACTGTCTTTGACAAGTTATTTTATTGG
CTAATAGTGATTTTTGATCATGTTTTGTTTAGTTACGTAATAATAATTAC
ATATATAACATAACATATATAACATGAAAGACCTCTATTTTCACGGCAAA
TAACTTCCAAGCTTGAATTCCATCACACCAGCtaatcttttaaaatgttt
aataACCTGATGGATCAGGTCGGGTTATCGTGGTACATTGGTATAACCCG
GGCAGTGAAATCCACTGTCCTGCTTCTTACCCAAACTAGAATTATGCAAC
ACCCATCCACTGTCCCGTTTCGTACTCAAACTAGAATTATACCACACCCG
TCCACTGTGGATGGGCGTAGTgctgttccaattttttttgcgaagcggga
cagtcaAGAAAAGTCGTTTTGGGTGCGATGCGGGACAGTCAGAAGTGACG
GAGAATtgttttggtctgtaaaatttatgttGGGCACGAAGTTGCTTTCA
GTGTCCGGGTCATACCCATGTACCACGCTAACCCGACCTGATCACAACAG
TCAAACTAACAAGTCACTGTTTTGCAAACTAAGATCAAAATAATAATTAG
TGCAGTGAAAATAATTCCACTCAATCATTTCTTCCTACAGTACTGGATCA
TTGCCATCCGAATCCATGCCATAACAACGGTTTGTGTACAGAAACACAAC
ATGGTGTACAATGTGAATGTTCACCTGGTTTCAAGGGAAGGCTCTGTGAA
AGTAAGTATCATCTTGTTCAATCCCTCTAATTTAGCCAACAACCAAGCGG
TTACATTAAGACTCTCGCTGTAGCCAAGTTGAAACCGTAGATAAGTCGGG
TCAAAAACTTAAAAGTAAGATCTGACCGTACTGAATATTTTCAAGATTCC
GATTTCCAACCTAATTTGGATTGTATtcgtttggatttttttttgaacGT
ATCGGCAAGTATACAAGCTTAATCCTCTCTGGCGATCACACGCCAACTTT
TTCGGACGGCACTAAATcttagaaaagtcaaaaaagaatCGCATAATAGA
TCAGCTAAAGATTAGATTTGGTGTTCACGTGCTCGTAGATAGGAAGTAAC
AAACCCTGACTCCGTTTAAGTCAACTCTTTTCTTTTACTAAACGTTTTAG
TGGAATCAAAATGCGAGCCGATCAATCCATGCTTGAATGGAGGGACGTGT
CGAGAATTTGTGGATCATTATTACTGCGCATGTCCGTTGAGTTTCCGAGG
TGTTAATTGTGAAGGTTCGTATTAGAGGAATTACTTTACAAATAGTTTTT
TGTAATTCCAGAGCAAAGCTCAGTTTAAATGCAGTCACCCCAAGGTTTAA
GAAGATATAATCAAAGCTAGTGGCAAAGCTAAAAGAAAATAGGAAGTGGT
CTTTTTATGACCTCATCGCACGAAACCAAGAAAATCCAGAAACTACAATc
taaaaaagacgaaaaaactaTGCACAAAAGTCACCAAATTAGTACAATCT
AGTTGGAATGTAACTATTAGCATCtagtcaaaatacaaaatagcCAGTCT
CAAAACAAAACTGCTCAACCAGTAACATTTCACCTTTTCCTCATAGATTA
CATCAGCCCGACAAAGCCACCGCCTACCATTCCATTGAAACAAGTTGGTC
CACAGGCTATTCCCGCCCCAATGAACGCCCCAAATAGTGACATCCGTGAT
GTTTTCACATACCGGTCTACGGATCAATACGGAAATCCGTATTCGGAAAC
CCACGAAGAGATACGGAAAGGGCCGCAAGGGTTAGTAAACCCAGGCGCTA
GTTTAGTTCCGCATCCAGTTGCGCTTGCTGCAATGAATGAAGCTCCAGGT
ACCCATTTTGTCGGAGCACCGAATCTTGCAGAACACGGTGACGTCATCAT
GCATTCATCCCGGGAAGACGATAAAGCGGTTGTCAGTACATCAACAAGCG
AAGACGAAATTAAAAATCTTCCGGAAAACATCAAAGATGACCGGTATCAA
ACACATTTCGTAGAAGTTGATAAGGATAATGAAGGTCATGAATACAAACA
TAAATCATTAAGTCATAACCATCTCCATGTGGGTGAATCAGTGGGCGTTG
GTGAATACGCCCAACAAAAACACGCCCCTAATAATGATGAAGAGGCGGGG
AAAGTGATTTCGGATGTAGAAAAACATCATGAAGAAATAAAGGAGAATTC
GCATCAGCAACATGACCACGATGAACACATTTCAAACGAAAAACACGTCC
CACAGAATGTTTTTGTAGATCATTCATACCTCGATTTACCACACCACGCT
CGTCAACATGAACAATCgagcaaaacgttcgaaacaaaacaaactatCGA
GGCACAAGCAAGCGAAAGATCAAAACTCGATCGACCAGATGCAGAAACAT
CAGAAATGAGCAAACAGAATTTAAATCGAAATGGTAGCCCGAGTAGTGAT
GATGATAATAAAAGCAATATCAAAACAATAGGGGACATGTTAAAAATGTT
TGACCAAGCTACAAAAACTCTTTCTACAAAGATCATTAAAAGTGCTAATA
AAGTCATGCTCAGAGAGGGAAAAGCACCTTACATACCACAAGTAGAAAAG
TCGGGAAAATCAAACAGCAATCATCAATCCCGATCGGGACAAATCGGGAA
CGCAACACAATCCCCGTTTTCAgaaatgaaacattttatgCAGAATTTAT
ATAATTTAACCAATAAAATCACAAACATTAACAACGCCAAATCGGGTGTT
GGGGCGTCGATGAAGGGCGTTAAGAAACACGCCCTAGGCGCTACTGACGA
TCTATACAAACATTTTACAGACCATCAGAAAAATGCTTATACAAGCTGGA
GACGGCAAGCATTGATCAACTACCATGCCCGTAATCCGGGAAAACCGGTT
CCCCGCAATACGGTCTCTTTGTCCGAGAATTCATTGTGTCCGAAATTCTG
CAGGTTATTTTGTGATCCGTGGTGCGTGAAGATTGGATGTTGTAAACTTT
CACAGGAGAAGTTGAACATTTATAAAGAGATAGAGGAAAAGCAAGAagca
catttaaaaaatacgAAACCGTCTGGACTTTTGTTGCCCGATGAAGGTAG
GAAGAAGGCTTGAAATAGTGtatatataccctggacaaagtttCGCGATC
acggtgaagaaaaaaagtttttttaatgtggtaccctaatggtagcctAG
ATATCTAAGCCAGTTTTCAGTCACTTGCTATAAAATATGAaagttaagtt
gtgactgaaatACTGTTATTCAGCGCTAACTTAAATTTCACggatataaa
aaaatcattaaagcacCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006107XLOC_006107Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010873-exon-sc0000118-1491911889:66228..68346TCONS_00010873-exon-sc0000118-1491911889:66228..68346Clytia hemisphaericaexon
TCONS_00010873-exon-sc0000118-1510915933:66228..68346TCONS_00010873-exon-sc0000118-1510915933:66228..68346Clytia hemisphaericaexon
TCONS_00010873-exon-sc0000118-1575043694:66228..68346TCONS_00010873-exon-sc0000118-1575043694:66228..68346Clytia hemisphaericaexon
TCONS_00010873-exon-sc0000118-1491911889:69487..69600TCONS_00010873-exon-sc0000118-1491911889:69487..69600Clytia hemisphaericaexon
TCONS_00010873-exon-sc0000118-1510915933:69487..69600TCONS_00010873-exon-sc0000118-1510915933:69487..69600Clytia hemisphaericaexon
TCONS_00010873-exon-sc0000118-1575043694:69487..69600TCONS_00010873-exon-sc0000118-1575043694:69487..69600Clytia hemisphaericaexon
TCONS_00010873-exon-sc0000118-1491911889:69985..70092TCONS_00010873-exon-sc0000118-1491911889:69985..70092Clytia hemisphaericaexon
TCONS_00010873-exon-sc0000118-1510915933:69985..70092TCONS_00010873-exon-sc0000118-1510915933:69985..70092Clytia hemisphaericaexon
TCONS_00010873-exon-sc0000118-1575043694:69985..70092TCONS_00010873-exon-sc0000118-1575043694:69985..70092Clytia hemisphaericaexon
TCONS_00010873-exon-sc0000118-1491911889:71037..71096TCONS_00010873-exon-sc0000118-1491911889:71037..71096Clytia hemisphaericaexon
TCONS_00010873-exon-sc0000118-1510915933:71037..71096TCONS_00010873-exon-sc0000118-1510915933:71037..71096Clytia hemisphaericaexon
TCONS_00010873-exon-sc0000118-1575043694:71037..71096TCONS_00010873-exon-sc0000118-1575043694:71037..71096Clytia hemisphaericaexon
TCONS_00010873-exon-sc0000118-1491911889:72378..72428TCONS_00010873-exon-sc0000118-1491911889:72378..72428Clytia hemisphaericaexon
TCONS_00010873-exon-sc0000118-1510915933:72378..72428TCONS_00010873-exon-sc0000118-1510915933:72378..72428Clytia hemisphaericaexon
TCONS_00010873-exon-sc0000118-1575043694:72378..72428TCONS_00010873-exon-sc0000118-1575043694:72378..72428Clytia hemisphaericaexon
TCONS_00010873-exon-sc0000118-1491911889:72828..72941TCONS_00010873-exon-sc0000118-1491911889:72828..72941Clytia hemisphaericaexon
TCONS_00010873-exon-sc0000118-1510915933:72828..72941TCONS_00010873-exon-sc0000118-1510915933:72828..72941Clytia hemisphaericaexon
TCONS_00010873-exon-sc0000118-1575043694:72828..72941TCONS_00010873-exon-sc0000118-1575043694:72828..72941Clytia hemisphaericaexon
TCONS_00010873-exon-sc0000118-1491911889:73274..74995TCONS_00010873-exon-sc0000118-1491911889:73274..74995Clytia hemisphaericaexon
TCONS_00010873-exon-sc0000118-1510915933:73274..74995TCONS_00010873-exon-sc0000118-1510915933:73274..74995Clytia hemisphaericaexon
TCONS_00010873-exon-sc0000118-1575043694:73274..74995TCONS_00010873-exon-sc0000118-1575043694:73274..74995Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000118supercontigsc0000118:66228..74995 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0174507	0.0205758	0	0.181827	0.694672	3.37068e-06	0.195189	0.0468377	5.00887e-05	0.259414	0.762476	1.44835	0.231669	1.14996	0.593521	0.369055	0.237576	0	0.969078	1.0687	0.431854	0.942154	0.65718	0.0220805	1.1095e-05	0.067056	0	0
Blast
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BLAST of TCONS_00010873 vs. Swiss-Prot (Human)
Match: FAT1 (Protocadherin Fat 1 OS=Homo sapiens GN=FAT1 PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 1.406e-25
Identity = 58/148 (39.19%), Postives = 75/148 (50.68%), Query Frame = 1 
Query: 2134 CKYGPCLNGGVCTAHP-DKYYCSCLPGWIGTNCE-RRNACFPNPCHYG-ICSPNMDGFTCTCKAGFKGNLCNVLDHCHPNPCHNNGLCTETQHGVQCECSPGFKGRLCEMESKCEPINPCLNGGTCREFVDHYYCACPLSFRGVNCED 2568
            C   PC NGGVC   P   YYC C   +IGT+CE   N C   PC YG  C  +  GF C C+  + G  C +  +C   PC N G C ++  G  C+C  GF+G  C+ +      NPCL+G  C      Y+C C   +RG +CED
Sbjct: 4017 CASNPCQNGGVCNPSPAGGYYCKCSALYIGTHCEISVNPCSSKPCLYGGTCVVDNGGFVCQCRGLYTGQRCQLSPYCKDEPCKNGGTCFDSLDGAVCQCDSGFRGERCQSDIDECSGNPCLHGALCENTHGSYHCNCSHEYRGRHCED 4164
The following BLAST results are available for this feature:
BLAST of TCONS_00010873 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FAT11.406e-2539.19Protocadherin Fat 1 OS=Homo sapiens GN=FAT1 PE=1 S... [more]
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