TCONS_00010867 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010867
Unique NameTCONS_00010867
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3456

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010867 ID=TCONS_00010867|Name=TCONS_00010867|organism=Clytia hemisphaerica|type=transcript|length=3456bp
AGACTCGATTACATTCTCGATGCCGAGactattttttggcttttttggcT
CGTAAAAATGAGTTTATCACGCGTAacttgacattaaaatttgacgTAAA
TTTTCGTTGGTATTGGGATTGTAATCATGAGGCTATTTTGCTTGATTGGA
TTTTGGCTCAGTCTGGGGTgtgtattttgcagaccagatttGTTCCACGA
GAATGATGATGATGACGGGTACGCAGTTTGCAAGTATGGACCTTGTTTGA
ATGGAGGTGTTTGTACAGCGCATCCAGATAAATATTATTGCAGTTGTTTG
CCTGGTTGGATCGGAACCAATTGTGAACGACGGAACGCGTGTTTTCCGAA
TCCATGTCATTACGGAATTTGTTCACCGAATATGGACGGGTTCACATGCA
CGTGCAAAGCTGGATTCAAAGGGAATCTCTGTAATGTACTGGATCATTGC
CATCCGAATCCATGCCATAACAACGGTTTGTGTACAGAAACACAACATGG
TGTACAATGTGAATGTTCACCTGGTTTCAAGGGAAGGCTCTGTGAAATGG
AATCAAAATGCGAGCCGATCAATCCATGCTTGAATGGAGGGACGTGTCGA
GAATTTGTGGATCATTATTACTGCGCATGTCCGTTGAGTTTCCGAGGTGT
TAATTGTGAAGATTACATCAGCCCGACAAAGCCACCGCCTACCATTCCAT
TGAAACAAGTTGGTCCACAGGCTATTCCCGCCCCAATGAACGCCCCAAAT
AGTGACATCCGTGATGTTTTCACATACCGGTCTACGGATCAATACGGAAA
TCCGTATTCGGAAACCCACGAAGAGATACGGAAAGGGCCGCAAGGGTTAG
TAAACCCAGGCGCTAGTTTAGTTCCGCATCCAGTTGCGCTTGCTGCAATG
AATGAAGCTCCAGGTACCCATTTTGTCGGAGCACCGAATCTTGCAGAACA
CGGTGACGTCATCATGCATTCATCCCGGGAAGACGATAAAGCGGTTGTCA
GTACATCAACAAGCGAAGACGAAATTAAAAATCTTCCGGAAAACATCAAA
GATGACCGGTATCAAACACATTTCGTAGAAGTTGATAAGGATAATGAAGG
TCATGAATACAAACATAAATCATTAAGTCATAACCATCTCCATGTGGGTG
AATCAGTGGGCGTTGGTGAATACGCCCAACAAAAACACGCCCCTAATAAT
GATGAAGAGGCGGGGAAAGTGATTTCGGATGTAGAAAAACATCATGAAGA
AATAAAGGAGAATTCGCATCAGCAACATGACCACGATGAACACATTTCAA
ACGAAAAACACGTCCCACAGAATGTTTTTGTAGATCATTCATACCTCGAT
TTACCACACCACGCTCGTCAACATGAACAATCgagcaaaacgttcgaaac
aaaacaaactatCGAGGCACAAGCAAGCGAAAGATCAAAACTCGATCGAC
CAGATGCAGAAACATCAGAAATGAGCAAACAGAATTTAAATCGAAATGGT
AGCCCGAGTAGTGATGATGATAATAAAAGCAATATCAAAACAATAGGGGA
CATGTTAAAAATGTTTGACCAAGCTACAAAAACTCTTTCTACAAAGATCA
TTAAAAGTGCTAATAAAGTCATGCTCAGAGAGGGAAAAGCACCTTACATA
CCACAAGTAGAAAAGTCGGGAAAATCAAACAGCAATCATCAATCCCGATC
GGGACAAATCGGGAACGCAACACAATCCCCGTTTTCAgaaatgaaacatt
ttatgCAGAATTTATATAATTTAACCAATAAAATCACAAACATTAACAAC
GCCAAATCGGGTGTTGGGGCGTCGATGAAGGGCGTTAAGAAACACGCCCT
AGGCGCTACTGACGATCTATACAAACATTTTACAGACCATCAGAAAAATG
CTTATACAAGCTGGAGACGGCAAGCATTGATCAACTACCATGCCCGTAAT
CCGGGAAAACCGGTTCCCCGCAATACGGTCTCTTTGTCCGAGAATTCATT
GTGTCCGAAATTCTGCAGGTTATTTTGTGATCCGTGGTGCGTGAAGATTG
GATGTTGTAAACTTTCACAGGAGAAGTTGAACATTTATAAAGAGATAGAG
GAAAAGCAAGAagcacatttaaaaaatacgAAACCGTCTGGACTTTTGTT
GCCCGATGAAGTCGAAGAAAACGTACAGACGACAAAACGACAACATAATA
ACGACAATGACGTCACTTTAACACGACAACCGACGGCGACAAATAACGAG
ACTTTAAACGACAATTGTCGGAAATGTAACGAGAATGCAGACTGTGTACA
GGGGAGTGAACAGAAAGGTTGTGTCTGTAAACCGGGGTTCAGCGGTGACG
GAAAAGTGTGCACAGTGGACACGTGCATGTTATGTCATTTGGACGCTGAA
TGTGAGGGTGAAAGATGtttctgtaaaaataatttcgaaGGAGATGGATA
CGAGTGTCGACCTTTGCACGCCTCGAAACGGAACCAATGTTCAGATTGTC
ATTTAAAGGCTGATTGTACATCAGGAGAATGTGTTTGCAGTATGGGTTAC
TATGGAAACGGCAAAAATTGTTGGCCCATACCCATCATTTGAATATGAAA
AAGTAGATTCTTCTGGGCTACAGTTTTATCTAAATCTTCAAAACCATGAT
ATGCNGATAGGAACTAACGCTCACTGGATATATGAAAAAGTTGATTCTTC
TGGGCTACAGTTTTATGTGAATCTTCAAAACCATATTGGCTACTTCAAAA
TATACAGAATTGGGATTAACGCCGTCTGGATTCTATCTCATCTGCGCGCC
AGGATATTCGCTCCATTTATCACCACCAAAACATCTGTTTACAGTAAAAC
TGCTTGTTGTTAGAATCGCTTAGGTGATGTCTAAGAGTCTAGGGCAAATT
CATGTAATCTGAGACAAAAAACAGAAGCATTTTGTAAACCGCGTCCCCGT
GTGTctcaggctttatttacgttgaTGATTGACGCCAGggaattatctag
cgctatcagtaagaataaaaaagctgataatgcacagggaacgaggttgg
caTTTTGTGTATGGATAACATTGGTTTGTTTCGAATCGCTGAAATCCATG
AAGGATAATTCTTCTCCTCACtgggcaatatattgaaaatcgGAGACGAT
TCACGGCTAATTAATGGAATCGCTATGAGACTAACCTAGCCTGTACCACC
CCGCCAACGGGTGTTTTTCATATATTTGGCAAACCGAACTTTATCTTTTT
TAGTCATCGAAGAAGAGTCTGGTACAGGCTAAGACTAACCCTattgaaaa
aacatttacacagCAACGTTTACGCAGTGAGTTGAATCGGCAATAAACTC
ATTTATCACAACAAGCTTTGATAATATGATGGaaatttttgtaatataat
tTTTTATGTTCTTGATGAAATGCATATACAGTAAAGTAAACAAAGGTTTG
ATAAGT
Run BLAST on NCBI

transcript from alignment at sc0000118:65463..78770+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010867 ID=TCONS_00010867|Name=TCONS_00010867|organism=Clytia hemisphaerica|type=transcript|length=13308bp|location=Sequence derived from alignment at sc0000118:65463..78770+ (Clytia hemisphaerica)
AGACTCGATTACATTCTCGATGCCGAGactattttttggcttttttggcT
CGTAAAAATGAGTTTATCACGCGTAacttgacattaaaatttgacgTAAA
TTTTCGTTGGTATTGGGATTGTAATCATGAGGCTATTTTGCTTGATTGGA
TTTTGGCTCAGTCTGGGGTgtgtattttgcagaccagatttGTTCCACGA
GAATGATGATGATGGTAAGATTTTAAAGACCCAGAAAAGGTCTCATATAC
AACAACATCACCATGACGACACGCAAAAACACAAACGACAGCAAATGACC
AATCATAACGCACGACGCAATACACAACACAAAAGACACTAcatgacaaa
aaataacaatGTTAAGGAGCTTAATACCAAACGACACGCAATTATAAACA
ACGTTAAATCAAGCCACAAAACGACGGCTTCAAAGCGACACACGATCACG
TCAAAACAACATAGAACAGTCACAAAATACCATCCACTACGATCACAACA
TAACGACAAACGTTCCAAAACGCGACAACAAAAACACAAACACTTTACAC
GACATACAATCACTCATCCACAACAGGCACAACACGTGTCAACAAAAAAA
GACAGTCTCACAACACACCAAAAAATCACTAAACCAACAAATTTCACCAA
AGATGAAAACCATAAAAAAGCGGAAGTCTTTTTACTGGATGCATCGAAAA
TTGATGAAGATGGGGTCGTCAGAGGTCGAGACACAACCTCCAGTGCTGTC
GGTAACATTATAGCTCCTGAAGAAGATGTGTTAGCAAGtaagaaagaaaa
tatcaatAACCTTCTTACCAATGCTGATGGTAAGAATCCAGAATCATTGG
AGCAGAATCTGATGATGAACCAAGATTCAGCTAAAGGAAGCATTGTTCCG
ATGTCTGTATCCTTTGGTGGTTTCAAATCACTCGACGATGCTGTGTTGCA
ATCGAATATACCAGCTGAAGTTGATTATCTGAAAGGGAGTTATAATGGGA
ACAAGGATTTCATGAAGAGCTTGCAGACGCCAACAGATGGACCTGAAGAG
CAAGCAGTTAGTCGACAATTAGCAGGGGTCGAAGGACAGAAGACAGAATC
GTTGTCCAAATTTATAGAGAGTAATGATCCACAGGGGGAATTATCAAAGA
TCGGTGATTCCTTGACGATGTCAAAAATTGAACCAGGAGAGCTTCAAACT
GGGGAATCTTCAAAGATTAGTGATTCCTTAACCACATCTAAACTTGATTC
AGGTGACCCTTCAAAAATGATGGATTCTATTTTAGAACCAATCAAGACAT
CAGCGAAATATTCACCAACAAGTTTTATGAATACAGAAACAGCCATTAAA
GGTGACCCTGCCTTCTCACAAGCCGTAACCCAAGACaatttactggacaa
ctcagtCAAAGAAGCTATAAATgcagaaatgaaaaaagatattgaTCTAG
CCACGGGTGAAGAGAAACAAACGGATACACGTTCGTCTGCTTATGAATAT
AAACCCAAggaatcttctttttcaaatgtCAAGGAATTCCCTTCTTCTAT
GGTGGGTGATATCGCGACTGTAGCGGAGGCGGTTGATAAAGCAGCCGTCA
GTCGCTCACATAAAATGAAATATAAGAAACAGCGCGAGAAAGTTGGGAAG
TCCAAGAAACTAGTCAAACAGAGGTCTTCGAATAAACATCATAAAACATC
GACACGTTCGAAATCCTTACACTCGCTGCCGACAGTTCCAAAAGTCAAAA
CAACAGCTCAACAAAAAGTAGAGGAATCCCCGAAACAAATGACAGGGGAA
GCACCATCTATAGAAGAGCAGCATGTGATTCCCCAATTATCCGATTCCCT
GGACGTCAATACACATCCTTCGGCACTGACCGCGAGTGAACAGAATCTGA
TCGCGTCTATCGACCGCGCGGCCCGAAAGAAGGACGTGGCGAACGAAATG
GTTAACCGTATCATGATGCCGACTAAAAGTGATCCTTTCTCAGACCAAGC
TCTCACTCCACCTGAACAACTCCTCGACATGCTCTCCAATGGAAAATTCA
ACGACCCCTTACCTGAAAGCGTACTCGACCGCTTATCCAATCTTGATCCG
AACAAAGCTATGTTACCTGATTCAAACGCTTTCATgcaaccaaaacaaaa
aagccCTACTTCAGGTTTAATGCAAGTTGGGTCTGAATTACTACCAGTCA
AAAGCGTCGCTTTAAACCAGCCGCAAGTTACACCACAACCGCTTCTAGAC
ACAAGAGAGTTAGCGAGAGCTGAgaaacaaatgaaaacaaaccCATATTA
CCTAGCCCAGAATAACATGCTGTTAGACGCAAACAATTTCAAAAGCATGC
AAGATCTTTCTAATATTGGAGAAGCGATGTTTTCTAAGAACGTTATCGAC
TTAAAACAGCCGATGATGATGGGCGGAAACGAATTGGCTGAGGGTGGTTT
TAATGATAACACCCTTTCTTTCGGGGCGTCATTAGGTGAACCGTCTTCCA
CAAGTAGCACGGCAGTTGCAAGAAACCAGATGAATAATAATAAAAACCTT
CAATCGGTTACCGGTAAAACAAGATGTCCCAATTGCGTCACCGGTGGACA
ATATGGTAGCCAAGCTGCAGGATTTTCTCCACAGCGTTTACTACACAAAG
AATCCCACTTTGTACATAATGATATCGATCCTTTAGTGTTGGAGCAGATC
CGACATCTACCGACAGTGAATATGAAGAAATTGATAGAAACACACAGGAA
GAAGACTGGACACAACAAACACAAAGGGAAAACAACTTTCCAAGATGCAA
TGTCTGATACGAGTGTCTCACATAACACGGACGATGAATTCGTACCTGAG
AAAATTGTCACTCTTCCTGAAGAGCACGTCAATCGTAAGTCGGTGTTCTT
TAAGACCTATTCGCACTTTGATACAGTATAGAAAACGCCCTTGCCGCGCA
GCCCTGGCTTACTATTCCCCATAAGTAGTGAGTTAAAAAttcctatcgaa
atcccaatagaatagggatagaaattttattgttcccaGCTCAAAAAAcc
caatggggatggttttggagtgcaattttttatatcaaaattttgaatgg
ggataaAATGAAAGTCCATTTTCAGTTGGCTGAAACtgtagggtattttt
ttcaaccggatatgaaattttggtcaatttttttagTTACCGGGTCTGTA
ACACAGAGAGGTGTGTTCGTAGCCTCTCTAATCAGTAACCAGACCTTACA
ACATAACTGTGACTTTGACGCTGACGTTGACGGTATCGACCACGTcttta
aataaaacaaaaatttcacatATTCACAGTTTTCATATTATTAAACTAAA
GaacgtttttcttttgaatggTAGGAAAAAGTTTCCATAAAAAGTAGGCC
CTTGTTAAACATATTTATTTCTGAATGCTACCTTTCGGCTAACCATTTTT
GGTCCTCAATCACAAACAACTATCCATACAGACTTTCGAACGTCACGTGA
TCTATTTTTAGCAATCTGATTCGTCGAAAACTGTGACGTAACGTATGAAA
ATCCATCCCATCTCACTAGTCTGTCCAGCCCGCCTCAATATAAACAGCAC
CTAATGGATTCTTTTGTTCCGATTCTCAAAATACCAGCCCCTGCCCAACT
GGCACAcgacgtcgtttcaacgttcatttaacgttatatggacgttgtga
acgttagataaacgtctaaaaaacgttgtgtgccagctgggtgacTATAA
GCAAGAAATGTACCCATATGGCTATAGGcaatttcacagtcgcaaagcgt
aatgggtaatcaggaccactgtgCGCTAACGACGatttactattggtcca
aagttttgaaatttttttaagatttttgcgtcCAGCCAACGGGAGGCCGT
TAAAGATGCGCAaacagtcctgattacccatgatccatttcgactgtgaa
atggcctataagCAAGAAATGTACCCATATGAACCATCACTgacttaaaa
aaactttattctcTTTGTTCACAGACGGGTACGCAGTTTGCAAGTATGGA
CCTTGTTTGAATGGAGGTGTTTGTACAGCGCATCCAGATAAATATTATTG
CAGTTGTTTGCCTGGTTGGATCGGAACCAATTGTGAACGTAAGAAGCTCA
TTTGATGAAATAAATTTGTTCTTAGTATGCAATCTCTTAATCACTAGAAT
CTGATGGGTTCTTGAGATTGCAATCTTCTCCATATTTGCACNGCTTAGTA
TGTAGTCTCTTAATCACTAGAATCTGATGGGTTCTTGAGATTACAATCTT
CTCCATATTTGCACGATTCATTTATATTATATTTGCTTATTCCCGAGGTA
TCATAGAAAATCTTTCTAGCTAGCAACTATTGATTCAATTTCTGAATTAA
TTCACTtgtggtgtaaatgcatcgagatcGCTGGAGGATAGAAAGCCCAT
GTTCCGAATCACGAGACCCTAGGTTTGGCTCCCACTACATAATAGTCTAG
AACATTTCACATTCTCTTAAAGGACGGAACGCGTGTTTTCCGAATCCATG
TCATTACGGAATTTGTTCACCGAATATGGACGGGTTCACATGCACGTGCA
AAGCTGGATTCAAAGGGAATCTCTGTAATGGTGAgttctttttttctgtt
ttacgTTTTGACGATCACGTGGAACATTCATTTTCTCGGCCGAATACCTA
ATTACACGAATCTTACTAGTCAAGTATTCAACGGCTTtaaaattaacacg
caaaaaaacaacacgaattttatttgctttttcaaggacaccacagctgg
ttttaattaaaggGGTTTTAAATAACACGAAATTTCTTAATTCGTGTTAA
TTACATGTCTACTtattttcgtgtaataaggtaactTTAGAGTTTCATTT
CATGAGCAAATTTTCTCAGTCAAAACGTTCTCTTTTCAAATTTGGGAATA
GAGTTGAACTGTCTTTGACAAGTTATTTTATTGGCTAATAGTGATTTTTG
ATCATGTTTTGTTTAGTTACGTAATAATAATTACATATATAACATAACAT
ATATAACATGAAAGACCTCTATTTTCACGGCAAATAACTTCCAAGCTTGA
ATTCCATCACACCAGCtaatcttttaaaatgtttaataACCTGATGGATC
AGGTCGGGTTATCGTGGTACATTGGTATAACCCGGGCAGTGAAATCCACT
GTCCTGCTTCTTACCCAAACTAGAATTATGCAACACCCATCCACTGTCCC
GTTTCGTACTCAAACTAGAATTATACCACACCCGTCCACTGTGGATGGGC
GTAGTgctgttccaattttttttgcgaagcgggacagtcaAGAAAAGTCG
TTTTGGGTGCGATGCGGGACAGTCAGAAGTGACGGAGAATtgttttggtc
tgtaaaatttatgttGGGCACGAAGTTGCTTTCAGTGTCCGGGTCATACC
CATGTACCACGCTAACCCGACCTGATCACAACAGTCAAACTAACAAGTCA
CTGTTTTGCAAACTAAGATCAAAATAATAATTAGTGCAGTGAAAATAATT
CCACTCAATCATTTCTTCCTACAGTACTGGATCATTGCCATCCGAATCCA
TGCCATAACAACGGTTTGTGTACAGAAACACAACATGGTGTACAATGTGA
ATGTTCACCTGGTTTCAAGGGAAGGCTCTGTGAAAGTAAGTATCATCTTG
TTCAATCCCTCTAATTTAGCCAACAACCAAGCGGTTACATTAAGACTCTC
GCTGTAGCCAAGTTGAAACCGTAGATAAGTCGGGTCAAAAACTTAAAAGT
AAGATCTGACCGTACTGAATATTTTCAAGATTCCGATTTCCAACCTAATT
TGGATTGTATTCGTTTGGATTNTTGTACGTGCAAAGCTGGATTCAAAGGG
AATCTCTGTAATGGTGAGTTCTTTTTCTGTTTTACGTTTTGACGATCACG
TGGAACATTCATTTTCTCGGCCGAATACCTAATTACACGAATCTTACTAG
TCAAGTATTCAACGGTTTtaaaattaacacgcaaaaaaacaacacgaatt
ttatttgctttttcaaggacaccacagctggttttaattaaaggGGTTTT
AAATAACACGAAATTTCTTAATTCGTGTTAATTACATGTCTACTtatttt
cgtgtaataaggtaactTTAGAGTTTCATTTCATGAGCAAATTTTCTCAG
TCAAAACGTTCTCTTTTCAAATTTGGGAATAGAGTTGAACTGTCTTTGAC
AAGTTATTTTATTGGCTAATAGTGATTTTTGATCATGTTTTGTTTAGTTA
CGTAATAATAATTACATATATAACATAACATATATAACATGAAAGACCTC
TATTTTCACGGCAAATAACTTCCAAGCTTGAATTCCATCACACCAGCtaa
tcttttaaaatgtttaataACCTGATGGATCAGGTCGGGTTATCGTGGTA
CATTGGTATAACCCGGGCAGTGAAATCCACTGTCCTGCTTCTTACCCAAA
CTAGAATTATGCAACACCCATCCACTGTCCCGTTTCGTACTCAAACTAGA
ATTATACCACACCCGTCCACTGTGGATGGGCGTAGTgctgttccaatttt
ttttgcgaagcgggacagtcaAGAAAAGTCGTTTTGGGTGCGATGCGGGA
CAGTCAGAAGTGACGGAGAATtgttttggtctgtaaaatttatgttGGGC
ACGAAGTTGCTTTCAGTGTCCGGGTCATACCCATGTACCACGCTAACCCG
ACCTGATCACAACAGTCAAACTAACAAGTCACTGTTTTGCAAACTAAGAT
CAAAATAATAATTAGTGCAGTGAAAATAATTCCACTCAATCATTTCTTCC
TACAGTACTGGATCATTGCCATCCGAATCCATGCCATAACAACGGTTTGT
GTACAGAAACACAACATGGTGTACAATGTGAATGTTCACCTGGTTTCAAG
GGAAGGCTCTGTGAAAGTAAGTATCATCTTGTTCAATCCCTCTAATTTAG
CCAACAACCAAGCGGTTACATTAAGACTCTCGCTGTAGCCAAGTTGAAAC
CGTAGATAAGTCGGGTCAAAAACTTAAAAGTAAGATCTGACCGTACTGAA
TATTTTCAAGATTCCGATTTCCAACCTAATTTGGATTGTATtcgtttgga
tttttttttgaacGTATCGGCAAGTATACAAGCTTAATCCTCTCTGGCGA
TCACACGCCAACTTTTTCGGACGGCACTAAATcttagaaaagtcaaaaaa
gaatCGCATAATAGATCAGCTAAAGATTAGATTTGGTGTTCACGTGCTCG
TAGATAGGAAGTAACAAACCCTGACTCCGTTTAAGTCAACTCTTTTCTTT
TACTAAACGTTTTAGTGGAATCAAAATGCGAGCCGATCAATCCATGCTTG
AATGGAGGGACGTGTCGAGAATTTGTGGATCATTATTACTGCGCATGTCC
GTTGAGTTTCCGAGGTGTTAATTGTGAAGGTTCGTATTAGAGGAATTACT
TTACAAATAGTTTTTTGTAATTCCAGAGCAAAGCTCAGTTTAAATGCAGT
CACCCCAAGGTTTAAGAAGATATAATCAAAGCTAGTGGCAAAGCTAAAAG
AAAATAGGAAGTGGTCTTTTTATGACCTCATCGCACGAAACCAAGAAAAT
CCAGAAACTACAATctaaaaaagacgaaaaaactaTGCACAAAAGTCACC
AAATTAGTACAATCTAGTTGGAATGTAACTATTAGCATCtagtcaaaata
caaaatagcCAGTCTCAAAACAAAACTGCTCAACCAGTAACATTTCACCT
TTTCCTCATAGATTACATCAGCCCGACAAAGCCACCGCCTACCATTCCAT
TGAAACAAGTTGGTCCACAGGCTATTCCCGCCCCAATGAACGCCCCAAAT
AGTGACATCCGTGATGTTTTCACATACCGGTCTACGGATCAATACGGAAA
TCCGTATTCGGAAACCCACGAAGAGATACGGAAAGGGCCGCAAGGGTTAG
TAAACCCAGGCGCTAGTTTAGTTCCGCATCCAGTTGCGCTTGCTGCAATG
AATGAAGCTCCAGGTACCCATTTTGTCGGAGCACCGAATCTTGCAGAACA
CGGTGACGTCATCATGCATTCATCCCGGGAAGACGATAAAGCGGTTGTCA
GTACATCAACAAGCGAAGACGAAATTAAAAATCTTCCGGAAAACATCAAA
GATGACCGGTATCAAACACATTTCGTAGAAGTTGATAAGGATAATGAAGG
TCATGAATACAAACATAAATCATTAAGTCATAACCATCTCCATGTGGGTG
AATCAGTGGGCGTTGGTGAATACGCCCAACAAAAACACGCCCCTAATAAT
GATGAAGAGGCGGGGAAAGTGATTTCGGATGTAGAAAAACATCATGAAGA
AATAAAGGAGAATTCGCATCAGCAACATGACCACGATGAACACATTTCAA
ACGAAAAACACGTCCCACAGAATGTTTTTGTAGATCATTCATACCTCGAT
TTACCACACCACGCTCGTCAACATGAACAATCgagcaaaacgttcgaaac
aaaacaaactatCGAGGCACAAGCAAGCGAAAGATCAAAACTCGATCGAC
CAGATGCAGAAACATCAGAAATGAGCAAACAGAATTTAAATCGAAATGGT
AGCCCGAGTAGTGATGATGATAATAAAAGCAATATCAAAACAATAGGGGA
CATGTTAAAAATGTTTGACCAAGCTACAAAAACTCTTTCTACAAAGATCA
TTAAAAGTGCTAATAAAGTCATGCTCAGAGAGGGAAAAGCACCTTACATA
CCACAAGTAGAAAAGTCGGGAAAATCAAACAGCAATCATCAATCCCGATC
GGGACAAATCGGGAACGCAACACAATCCCCGTTTTCAgaaatgaaacatt
ttatgCAGAATTTATATAATTTAACCAATAAAATCACAAACATTAACAAC
GCCAAATCGGGTGTTGGGGCGTCGATGAAGGGCGTTAAGAAACACGCCCT
AGGCGCTACTGACGATCTATACAAACATTTTACAGACCATCAGAAAAATG
CTTATACAAGCTGGAGACGGCAAGCATTGATCAACTACCATGCCCGTAAT
CCGGGAAAACCGGTTCCCCGCAATACGGTCTCTTTGTCCGAGAATTCATT
GTGTCCGAAATTCTGCAGGTTATTTTGTGATCCGTGGTGCGTGAAGATTG
GATGTTGTAAACTTTCACAGGAGAAGTTGAACATTTATAAAGAGATAGAG
GAAAAGCAAGAagcacatttaaaaaatacgAAACCGTCTGGACTTTTGTT
GCCCGATGAAGGTAGGAAGAAGGCTTGAAATAGTGtatatataccctgga
caaagtttCGCGATCacggtgaagaaaaaaagtttttttaatgtggtacc
ctaatggtagcctAGATATCTAAGCCAGTTTTCAGTCACTTGCTATAAAA
TATGAaagttaagttgtgactgaaatACTGTTATTCAGCGCTAACTTAAA
TTTCACggatataaaaaaatcattaaagcacCGAAAACGCTATACATCTT
TATACAGTATATCGCGCGCTGTAATATCTGGCTTCATTAATCAGGccacc
ctaatggtagcacttaTCAAAGTTAGTGaacaattttaaacttttattta
aTTATAAACTGACCCACATCGAGTAgcgctaccattagggtaccactttt
aaaaaaacttcgatcaaagattgcCGATATAGCTTGGTCAAAGTAATACT
GACCTTAGTGGGTTTTCCATGTTTtactaagttacgtaatttacacCATT
ACGGAAGCGTTCGAATATGCAGAGGCGATAACTTgctttcataatggcgg
aaattacgtaacttaatgAAACATAGAAAACCTATAAAGTGAACAAATCT
TCACAACCTCCGCGAGGCCGTTTTCTAACGAAttggaaaaattacaaaaa
agtattttaattTACCTCATTTTGTTATGTAAATACGTCGTAATGAGAGA
ATTCTTCTGTCAATTATAACTTCCAACATGCCTGAAAATATGAATTTATT
ATTGAAGTAACAACATTTAGGAAAAAAACTTActacgttatatggacgtt
atgaacatttagataaacgttgaaactaCGCTTCAACGCTTCAACGTGTC
CATTTTTAATTATTGGCCAGAAGTTcatggagttatcaaaacagtACAAA
ATATAAGTTGCTTGTTGGAAATTTAgtccatttttgttttatttttcaat
ataatCCTTTATTATAATCTTAATATATGATGAAAATTATGTcaacaaat
aaagaaaaaatcaaattttgaatatattttacaGTCGAAGAAAACGTACA
GACGACAAAACGACAACATAATAACGACAATGACGTCACTTTAACACGAC
AACCGACGGCGACAAATAACGAGACTTTAAACGACAATTGTCGGAAATGT
AACGAGAATGCAGACTGTGTACAGGGGAGTGAACAGAAAGGTTGTGTCTG
TAAACCGGGGTTCAGCGGTGACGGAAAAGTGTGCACAGGTAAGTCAGACT
ACTTTTCTTTTGAACTTTAAAATCTCTTGTCTTCGTCCAAGAATTTCACA
GGCCTCTATAAGCCACTGCACTGTTGCAGAATAGAGTTCTATATTAAACA
GGTTGAGGCCCCTACCACCAGGCAATTTTCATgagttttgtttttatgtt
ttatattgataatattttcaagaattatcaaaaagggGATCCTAACATGG
TCCGGGGATTATAAAATACCAATTATTGGACACTTAGGGAAATTTTATCT
TTGGTCGGTAAAGATATTGCAAGAATAGAGTAGAGGTCCATCTGAAAGCT
CTGGGTAGTTCGGTGAagataccttaagagaagaaattttggcgactgaG
CCCATTTgccaattttggtgcaatttgtcggaatttatttttaataaaat
ttctaaatttggcgcTCGAATAAAATTTGGCGAAtgactaattttttttc
tcaatattttagctgaaaaaagaggaaaaaaaaaggtttttagaaGAAAC
AGAGactaatttgaaagaaaattaaatttggcgagaatctGTTTTGGCGA
GTGACCTATAAAGttaaattcgccaaaatttctttccttaaggCAGAGAT
TCTTTCACCATAATAACCTACGTCCCGACTGGAAGTGATCGGGATTCGAT
TACAGTCCCTTGCCGTACAAGTCTGCAATTTAATCCTTCCTCTGGGTAGT
TTTTTCGTCGTTTACATAATTATGACTTTTTCCTTTCTACTAGTGGACAC
GTGCATGTTATGTCATTTGGACGCTGAATGTGAGGGTGAAAGATGtttct
gtaaaaataatttcgaaGGAGATGGATACGAGTGTCGACCTTTGCACGGT
ATGTATTCTCATCTTCCAACAAGGTTCAGAAAAATGGTacacgtacacgt
ttttttataagaacatccaaacatTTTTAagccttggaatgttcttaaca
tgttcttatttttgctatttttttagtattttagccaattttcctacgaa
atttggtcttcaaagccttcaaatgttgttaactttttcttaagattttg
gctattgaagcctaatgttcttatatagtttattcttataagaaaacgtg
taacaagtgatacttgtcttttataagcacacaAAATTTCGAGAACAGGC
TCGGAGATGCTTAGGACAAGGGCTTGACAgggctgaaaaatgcttataag
gatgaaaaatttgaaggaaATTCTGAAAATCCGAAACAATCCCAGCTAAA
ATcaggaaaatacatttttttcgtaggctcaagctAATGCTTGGCAAATG
CTTATATTtttgccatatctgagcctagatatgcttataagtgcattata
aaaaacatgtacctgGTTAATCTACAGAATATTAGACATATAATTGAAAC
AATTAAGACAGAAAACCCTAAAACCCTTATACTGTAGGCTcgtaaaaata
ataaaaaaacccCTGGAATTTAAGATTCTCATCAATGTAAAATTGCCATC
TATGCCATTCAATAGTCAATCAACGCCAATTATAGTAGGGGCCAACCCCA
AACCCCAATTCCACCAATCAAAACCCGTTTTTAGAAAATTCGACTATAGA
ACATCGAGAGGGGGCAAAAGTTGTGACTGTAACGTCAGTTTATTGTCCAT
AAAAACTTTTAACAGATCTAATTTGCGCCCCCTCTACTgaattataaaat
atttcatcaatTTCACAATCACAAAAAGGAATTTCAGATTCTTTCAAAGa
caattttattttacttttctaGCCTCGAAACGGAACCAATGTTCAGATTG
TCATTTAAAGGCTGATTGTACATCAGGAGAATGTGTTTGCAGTATGGGTT
ACTATGGAAACGGCAAAAATTGTTGGCCCATACCCATCATTTGAATATGA
AAAAGTAGATTCTTCTGGGCTACAGTTTTATCTAAATCTTCAAAACCATG
ATATGCNGATAGGAACTAACGCTCACTGGATATATGAAAAAGTTGATTCT
TCTGGGCTACAGTTTTATGTGAATCTTCAAAACCATATTGGCTACTTCAA
AATATACAGAATTGGGATTAACGCCGTCTGGATTCTATCTCATCTGCGCG
CCAGGATATTCGCTCCATTTATCACCACCAAAACATCTGTTTACAGTAAA
ACTGCTTGTTGTTAGAATCGCTTAGGTGATGTCTAAGAGTCTAGGGCAAA
TTCATGTAATCTGAGACAAAAAACAGAAGCATTTTGTAAACCGCGTCCCC
GTGTGTctcaggctttatttacgttgaTGATTGACGCCAGggaattatct
agcgctatcagtaagaataaaaaagctgataatgcacagggaacgaggtt
ggcaTTTTGTGTATGGATAACATTGGTTTGTTTCGAATCGCTGAAATCCA
TGAAGGATAATTCTTCTCCTCACtgggcaatatattgaaaatcgGAGACG
ATTCACGGCTAATTAATGGAATCGCTATGAGACTAACCTAGCCTGTACCA
CCCCGCCAACGGGTGTTTTTCATATATTTGGCAAACCGAACTTTATCTTT
TTTAGTCATCGAAGAAGAGTCTGGTACAGGCTAAGACTAACCCTattgaa
aaaacatttacacagCAACGTTTACGCAGTGAGTTGAATCGGCAATAAAC
TCATTTATCACAACAAGCTTTGATAATATGATGGaaatttttgtaatata
attTTTTATGTTCTTGATGAAATGCATATACAGTAAAGTAAACAAAGGTT
TGATAAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006107XLOC_006107Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010867-exon-sc0000118-1491911889:65463..65676TCONS_00010867-exon-sc0000118-1491911889:65463..65676Clytia hemisphaericaexon
TCONS_00010867-exon-sc0000118-1510915933:65463..65676TCONS_00010867-exon-sc0000118-1510915933:65463..65676Clytia hemisphaericaexon
TCONS_00010867-exon-sc0000118-1575043694:65463..65676TCONS_00010867-exon-sc0000118-1575043694:65463..65676Clytia hemisphaericaexon
TCONS_00010867-exon-sc0000118-1491911889:69487..69600TCONS_00010867-exon-sc0000118-1491911889:69487..69600Clytia hemisphaericaexon
TCONS_00010867-exon-sc0000118-1510915933:69487..69600TCONS_00010867-exon-sc0000118-1510915933:69487..69600Clytia hemisphaericaexon
TCONS_00010867-exon-sc0000118-1575043694:69487..69600TCONS_00010867-exon-sc0000118-1575043694:69487..69600Clytia hemisphaericaexon
TCONS_00010867-exon-sc0000118-1491911889:69985..70092TCONS_00010867-exon-sc0000118-1491911889:69985..70092Clytia hemisphaericaexon
TCONS_00010867-exon-sc0000118-1510915933:69985..70092TCONS_00010867-exon-sc0000118-1510915933:69985..70092Clytia hemisphaericaexon
TCONS_00010867-exon-sc0000118-1575043694:69985..70092TCONS_00010867-exon-sc0000118-1575043694:69985..70092Clytia hemisphaericaexon
TCONS_00010867-exon-sc0000118-1491911889:72318..72428TCONS_00010867-exon-sc0000118-1491911889:72318..72428Clytia hemisphaericaexon
TCONS_00010867-exon-sc0000118-1510915933:72318..72428TCONS_00010867-exon-sc0000118-1510915933:72318..72428Clytia hemisphaericaexon
TCONS_00010867-exon-sc0000118-1575043694:72318..72428TCONS_00010867-exon-sc0000118-1575043694:72318..72428Clytia hemisphaericaexon
TCONS_00010867-exon-sc0000118-1491911889:72828..72941TCONS_00010867-exon-sc0000118-1491911889:72828..72941Clytia hemisphaericaexon
TCONS_00010867-exon-sc0000118-1510915933:72828..72941TCONS_00010867-exon-sc0000118-1510915933:72828..72941Clytia hemisphaericaexon
TCONS_00010867-exon-sc0000118-1575043694:72828..72941TCONS_00010867-exon-sc0000118-1575043694:72828..72941Clytia hemisphaericaexon
TCONS_00010867-exon-sc0000118-1491911889:73274..74773TCONS_00010867-exon-sc0000118-1491911889:73274..74773Clytia hemisphaericaexon
TCONS_00010867-exon-sc0000118-1510915933:73274..74773TCONS_00010867-exon-sc0000118-1510915933:73274..74773Clytia hemisphaericaexon
TCONS_00010867-exon-sc0000118-1575043694:73274..74773TCONS_00010867-exon-sc0000118-1575043694:73274..74773Clytia hemisphaericaexon
TCONS_00010867-exon-sc0000118-1491911889:75797..76000TCONS_00010867-exon-sc0000118-1491911889:75797..76000Clytia hemisphaericaexon
TCONS_00010867-exon-sc0000118-1510915933:75797..76000TCONS_00010867-exon-sc0000118-1510915933:75797..76000Clytia hemisphaericaexon
TCONS_00010867-exon-sc0000118-1575043694:75797..76000TCONS_00010867-exon-sc0000118-1575043694:75797..76000Clytia hemisphaericaexon
TCONS_00010867-exon-sc0000118-1491911889:76756..76860TCONS_00010867-exon-sc0000118-1491911889:76756..76860Clytia hemisphaericaexon
TCONS_00010867-exon-sc0000118-1510915933:76756..76860TCONS_00010867-exon-sc0000118-1510915933:76756..76860Clytia hemisphaericaexon
TCONS_00010867-exon-sc0000118-1575043694:76756..76860TCONS_00010867-exon-sc0000118-1575043694:76756..76860Clytia hemisphaericaexon
TCONS_00010867-exon-sc0000118-1491911889:77785..78770TCONS_00010867-exon-sc0000118-1491911889:77785..78770Clytia hemisphaericaexon
TCONS_00010867-exon-sc0000118-1510915933:77785..78770TCONS_00010867-exon-sc0000118-1510915933:77785..78770Clytia hemisphaericaexon
TCONS_00010867-exon-sc0000118-1575043694:77785..78770TCONS_00010867-exon-sc0000118-1575043694:77785..78770Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000118supercontigsc0000118:65463..78770 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.00576418	0.00915912	0.00172298	0	1.2127e-08	1.84015e-06	0.00299029	0.000435635	0	0	9.39486e-08	1.20759e-09	8.40677e-11	3.10831e-06	0.0226968	1.02201e-06	0.068081	0	0.00241097	0.000115905	0.000283238	2.51414e-05	0	0	0.0848027	0	0	0
Blast
[Close]
BLAST of TCONS_00010867 vs. Swiss-Prot (Human)
Match: FAT4 (Protocadherin Fat 4 OS=Homo sapiens GN=FAT4 PE=1 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 7.781e-28
Identity = 60/169 (35.50%), Postives = 79/169 (46.75%), Query Frame = 1 
Query:  229 CKYGPCLNGGVC---------------------TAHP-DKYYCSCLPGWIGTNCERR-NACFPNPCHYG-ICSPNMDGFTCTCKAGFKGNLCNV-LDHCHPNPCHNNGLCTETQHGVQCECSPGFKGRLCEMESKCEPINPCLNGGTCREFVDHYYCACPLSFRGVNCE 660
            C +GPC NGG C                        P   + C CLPG+ G+ CE   + C P+PCH G  C   + GF+C+C  GF G  C   ++ C  +PC N  +C        C C  G+ G++CE        NPC NGG+C+  VD YYC CP    G +CE
Sbjct: 3806 CVHGPCQNGGSCLRRLAVSSVLKSRESLPVIIVANEPLQPFLCKCLPGYAGSWCEIDIDECLPSPCHSGGTCHNLVGGFSCSCPDGFTGRACERDINECLQSPCKNGAICQNFPGSFNCVCKTGYTGKMCESSVNYCECNPCFNGGSCQSGVDSYYCHCPFGVFGKHCE 3974

HSP 2 Score: 85.1149 bits (209), Expect = 2.432e-16
Identity = 42/112 (37.50%), Postives = 54/112 (48.21%), Query Frame = 1 
Query:  229 CKYGPCLNGGVCTAHPDKYYCSCLPGWIGTNCERR-NACFPNPCHYGICSPNMDG-FTCTCKAGFKGNLC-NVLDHCHPNPCHNNGLCTETQHGVQCECSPGFKGRLCEMES 555
            C   PC +GG C      + CSC  G+ G  CER  N C  +PC  G    N  G F C CK G+ G +C + +++C  NPC N G C        C C  G  G+ CE+ S
Sbjct: 3866 CLPSPCHSGGTCHNLVGGFSCSCPDGFTGRACERDINECLQSPCKNGAICQNFPGSFNCVCKTGYTGKMCESSVNYCECNPCFNGGSCQSGVDSYYCHCPFGVFGKHCELNS 3977
The following BLAST results are available for this feature:
BLAST of TCONS_00010867 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FAT47.781e-2835.50Protocadherin Fat 4 OS=Homo sapiens GN=FAT4 PE=1 S... [more]
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