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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010865 ID=TCONS_00010865|Name=TCONS_00010865|organism=Clytia hemisphaerica|type=transcript|length=1454bp
ATCTTTGTCATCATTACAGAAAAGAAAAGAGAGTTTTGAAGAGGTGGGTT
GCAGGAGGtgtagcctagttaactaagttGCACGGCTTCGCCACACGGTT
TACTGCAATATAGCATTTTCGGCGccttaaagatttttttataattacGG
GTTTtgaagtttgccttggaatactgcaCTTATTTAAGACAAACGACTTA
CAAGCAGATTTATTCCACTGATCGAATCAAAGTAACTTTCTAGGCCGAAG
GAGTTGCACATTGTGAATGCAGAATTTGCTCCAGTATTTTGAAGAAGCAT
GGACTCTAGTGCCACCACCTTGTTGATGGTTTATCTTGGCGTTGTTGATG
CAGGCATTGTACCATCAAATCCAACTCCGCCCTCCAACTATACCACACCG
CCCGCTACAAACGCCCCTCCACCACAAAGAAATGGTATTGGTAATTTGCA
GATCTGGGAAATATCGTTTATCTGTATCGGCATTATTCTGTTTCTGGTAA
CCATGGCAATAGTGGTGGGTTGGTTCGCTAATAAGAATAAACGAGTCAAT
TATGATGAACTCGATGATTCAAACAAGTTGTTTTTGGGGAATCGGAAATA
TTATTTCTGGGAAAGTGAAACGGAAAAGTAActcaacgttgttttaacgt
tcatgtaacgttatatggacgttaggGACGCCAGATGGACGTTATAATGA
CGTTCTCTGTGTCAGCTGGGATGTTAATAGCTGAGGATAATGGAATTCAT
AGAAGGAATGTTCAAACAAGATTCCAACAACACGACGATGTGAAAATCCA
AGATATGATGAAACATTGACACAATTCCATATAACTGCGTAGCAATATCA
AAGAAAAGCGAAGAGCTGATGATATCATATAAAAGTAATAACTTGGGAGA
AGAAAGGTTAAAGAAAGTTTCACCAGTAAGACAATATGAAACTTTTAGCG
AGATATTCTTTACTTTGCGAAATAAAATCAGAAGAAGATCTCATCTCATC
TTATGGCAAACTAATGTTCATATTCTACGAGAGTCGAATGAAAACTAAGC
CAATTATTGTCAATAATGGAAAATTGGCATAATGCTTACAAAATTGAATT
TAACAATCGTTAAAAAACTATTCAGATAAATGATTAACCAACATAACACA
CGCATGAAAAAACTTGGCAAAAAGGTGAGATAATCGAGCAAAGTTAAGAT
AGATGATCGAGTCAAATGATATCCCGTTATTGGATTATCTAAAAAATATG
AACCAGCATAATAAACTGGTTCCCTTAAAAAGACATCTGGTGACAATCTT
TAACATCCGACGAACGTCTAAATTAAGTTGTGTGTTAGTGGAGATGGAAC
TTGAAAGAAAACTAATTTTGTATACAATATTTTGCGATTTTTGTAAAGAT
gttaaaatttgttgaaaataaCTTAAACGGATTTATCTATTTATCGGGTA
TGGG Run BLAST on NCBI protein sequence of TCONS_00010865-protein >TCONS_00010865-protein ID=TCONS_00010865-protein|Name=TCONS_00010865-protein|organism=Clytia hemisphaerica|type=polypeptide|length=110bp
MDSSATTLLMVYLGVVDAGIVPSNPTPPSNYTTPPATNAPPPQRNGIGNL
QIWEISFICIGIILFLVTMAIVVGWFANKNKRVNYDELDDSNKLFLGNRK
YYFWESETEK Run BLAST on NCBI transcript from alignment at sc0000118:62364..64409+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010865 ID=TCONS_00010865|Name=TCONS_00010865|organism=Clytia hemisphaerica|type=transcript|length=2046bp|location=Sequence derived from alignment at sc0000118:62364..64409+ (Clytia hemisphaerica)
ATCTTTGTCATCATTACAGAAAAGAAAAGAGAGTTTTGAAGAGGTGGGTT
GCAGGAGGtgtagcctagttaactaagttGCACGGCTTCGCCACACGGTT
TACTGCAATATAGCATTTTCGGCGccttaaagatttttttataattacGG
GTTTtgaagtttgccttggaatactgcaCTTATTTAAGACAAACGACTTA
CAAGCAGATTTATTCCACTGATCGAATCAAAGTAACTTTCTAGGCCGAAG
GAGTTGCACATTGTGAATGCAGAATTTGCTCCAGTATTTTGAAGAAGCAT
GGACTCTAGTGCCACCACCTTGTTGATGGTTTATCTTGGCGTTGTTGATG
CAGGTACCATTTTTTCCCCAAAGTTCTTTCGAGAATGGCGATAACGAAAG
TGACACCTTCAGACAAGGACATACgtcaccttttttataagaataaacta
tataagaacattttgaggatttacggactctaaaatacccaatttcttag
aaaaatagccaaaaatactcacaaaatggtgaaattaagaacatgtttaa
aAGAGCATTTTTAttcttaaaacttaaaaagttaagactttctccgaaga
cttcaaaaactttaaatgttcttataaaaaatggcGACAGGTTTGCAAGA
TGTCCatgccaaaatttaaaaattggtCCTGAGAGAGACTATTTTCCCAA
AGTCCAAACTTTCCCCCAAACTATGAGAACTCATGACCCTTTGAAGAAGT
CGATTTTAAGAGACTTTCGTGAGTGCAAAAAAGGGAGCGCGcatacccga
cacccattttgcctaagtacttCCCCTCAGGGAATTTAATAAGGATATGA
CGTACACTTCTATACAAAACTTTGTAAACTAGATGATAAGAATTTGTATA
CAGTCATCACTGACTTTACCCTAATCTCATGCTTTCACTCTACAGGCATT
GTACCATCAAATCCAACTCCGCCCTCCAACTATACCACACCGCCCGCTAC
AAACGCCCCTCCACCACAAAGAAATGGTATTGGTAATTTGCAGATCTGGG
AAATATCGTTTATCTGTATCGGCATTATTCTGTTTCTGGTAACCATGGCA
ATAGTGGTGGGTTGGTTCGCTAATAAGAATAAACGAGTCAATTATGATGA
ACTCGATGATTCAAACAAGTTGTTTTTGGGGAATCGGAAATATTATTTCT
GGGAAAGTGAAACGGAAAAGTAActcaacgttgttttaacgttcatgtaa
cgttatatggacgttaggGACGCCAGATGGACGTTATAATGACGTTCTCT
GTGTCAGCTGGGATGTTAATAGCTGAGGATAATGGAATTCATAGAAGGAA
TGTTCAAACAAGATTCCAACAACACGACGATGTGAAAATCCAAGATATGA
TGAAACATTGACACAATTCCATATAACTGCGTAGCAATATCAAAGAAAAG
CGAAGAGCTGATGATATCATATAAAAGTAATAACTTGGGAGAAGAAAGGT
TAAAGAAAGTTTCACCAGTAAGACAATATGAAACTTTTAGCGAGATATTC
TTTACTTTGCGAAATAAAATCAGAAGAAGATCTCATCTCATCTTATGGCA
AACTAATGTTCATATTCTACGAGAGTCGAATGAAAACTAAGCCAATTATT
GTCAATAATGGAAAATTGGCATAATGCTTACAAAATTGAATTTAACAATC
GTTAAAAAACTATTCAGATAAATGATTAACCAACATAACACACGCATGAA
AAAACTTGGCAAAAAGGTGAGATAATCGAGCAAAGTTAAGATAGATGATC
GAGTCAAATGATATCCCGTTATTGGATTATCTAAAAAATATGAACCAGCA
TAATAAACTGGTTCCCTTAAAAAGACATCTGGTGACAATCTTTAACATCC
GACGAACGTCTAAATTAAGTTGTGTGTTAGTGGAGATGGAACTTGAAAGA
AAACTAATTTTGTATACAATATTTTGCGATTTTTGTAAAGATgttaaaat
ttgttgaaaataaCTTAAACGGATTTATCTATTTATCGGGTATGGG Coding sequence (CDS) from alignment at sc0000118:62364..64409+ >TCONS_00010865 ID=TCONS_00010865|Name=TCONS_00010865|organism=Clytia hemisphaerica|type=CDS|length=666bp|location=Sequence derived from alignment at sc0000118:62364..64409+ (Clytia hemisphaerica)
ATGGACTCTAGTGCCACCACCTTGTTGATGGTTTATCTTGGCGTTGTTGA
TGCAGGCATTGTACCATCAAATCCAACTCCGCCCTCCAACTATACCACAC
CGCCCGCTACAAACGCCCCTCCACCACAAAGAAATGGTATTGGTAATTTG
CAGATCTGGGAAATATCGTTTATCTGTATCGGCATTATTCTGTTTCTGGT
AACCATGGCAATAGTGGTGGGTTGGTTCGCTAATAAGAATAAACGAGTCA
ATTATGATGAACTCGATGATTCAAACAAGTTGTTTTTGGGGAATCGGAAA
TATTATTTCTGGGAAAGTGAAACGGAAAAGTAAATGGACTCTAGTGCCAC
CACCTTGTTGATGGTTTATCTTGGCGTTGTTGATGCAGGCATTGTACCAT
CAAATCCAACTCCGCCCTCCAACTATACCACACCGCCCGCTACAAACGCC
CCTCCACCACAAAGAAATGGTATTGGTAATTTGCAGATCTGGGAAATATC
GTTTATCTGTATCGGCATTATTCTGTTTCTGGTAACCATGGCAATAGTGG
TGGGTTGGTTCGCTAATAAGAATAAACGAGTCAATTATGATGAACTCGAT
GATTCAAACAAGTTGTTTTTGGGGAATCGGAAATATTATTTCTGGGAAAG
TGAAACGGAAAAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010865-exon-sc0000118-1491911889:62364..62716 | TCONS_00010865-exon-sc0000118-1491911889:62364..62716 | Clytia hemisphaerica | exon |
| TCONS_00010865-exon-sc0000118-1510915933:62364..62716 | TCONS_00010865-exon-sc0000118-1510915933:62364..62716 | Clytia hemisphaerica | exon |
| TCONS_00010865-exon-sc0000118-1575043694:62364..62716 | TCONS_00010865-exon-sc0000118-1575043694:62364..62716 | Clytia hemisphaerica | exon |
| TCONS_00010865-exon-sc0000118-1491911889:63309..64409 | TCONS_00010865-exon-sc0000118-1491911889:63309..64409 | Clytia hemisphaerica | exon |
| TCONS_00010865-exon-sc0000118-1510915933:63309..64409 | TCONS_00010865-exon-sc0000118-1510915933:63309..64409 | Clytia hemisphaerica | exon |
| TCONS_00010865-exon-sc0000118-1575043694:63309..64409 | TCONS_00010865-exon-sc0000118-1575043694:63309..64409 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000118 | supercontig | sc0000118:62364..64409 + |
Blast
The following BLAST results are available for this feature:
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