TCONS_00010860 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010860
Unique NameTCONS_00010860
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3374

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010860 ID=TCONS_00010860|Name=TCONS_00010860|organism=Clytia hemisphaerica|type=transcript|length=3374bp
catcaagcagagtaGACTGATGTTTATGACCATTTTATGCAGATATTCAA
ATTTGACCTCCTCCCCCCCCATGGTGCAATCCCAAGTTTTTACAATACTA
AAACGCTCCATGTGTGTGGACCAAAGTAACATCTTCATTATCATTTCAGA
AAAACTAAAGCAAATTTCCAAAATACACTTAATCAAAGATACAGAcgcaa
aacaaaatggcagccAAGTTATTTACAATCATCTTTCTACTGGTCACCTA
TTCAGCTACCATTTCTAGCATCTCTGTATCCAAGCAAccgaaaaacaaca
acaaagaaaTCACTAACAATAATGGCGGCAGCAATGATGACAATAAAACG
CCTTGTCAGCGAAAAATAGAAGAAGATGAAAAGCGAAGAGCTGCTATTCG
GAAAGACATGTTAGATTTATTTGGTATACAGTTCCGTCCGAACCCCGATC
TTTTCGGACACTTAAGCCGTAACACACTGTCCGCTAAGAAATACATGTAT
GATTTATATAAAACATCAGTGACGTCAGACTGTGTGACGTcacaaccaaa
acaaacgaACGTTACCATGGAAATGATGAAAGATGCGGATACTGTGGTCA
GTTTTGTCAACACTAATGCCTTGGTTCCAAGACCCAATATAAGTGATGAG
GATGGAAGTATGTATTTTGACGTTCAGTCTAATTTTGTCGTGAAGCGTAC
ACTAGCCTCTGAGCTTCGTCTTTACCTTGACGCATCGAATAAAACCGTTC
CTGATTCACGACTCCGTGTAACATTGTACGAAATTGTTGTTCCAAAGAAA
CGGTACCGAAAACTCGTTTCCATAGAGATTAACGCAACAGAATCAGCATG
GCATGGTCTCGATGTCCTTGATGCGACGAAACGTTGGAAACAAGACTCGA
CTACTAATAATGGCGTCTTAGTAGTGTGTCAGACATTGGATAAGAAAATG
AAATCGTTAGCTGATTGTGgattggttgattttaaggGAGAAAATGAGAA
TAAACCGTTTTTGGTCTCGTTTTACCAATCGGGAGACGAAGAAGAGATTT
TGGCTGAGCAAGTCCCTTggaaggaagaagaagaaatttacAAGAGCAGT
GAGCATGCGCGGAGACGGAGAGCGCTTGAAGGGCTAAAAGATCTGTTCCC
GCAGGTGGAAAATATCGCGTCCGGGTTTGGAGGTATGTCCGGAGGGCCTA
ATAAGAAGAATACGtctatttgtaaacgaaaaccACTTTTTATTGGCTTC
AAAGATTTGGGATGGTCGGATTGGATAATGGCACCTGAAGGATACAAAGC
GTCCTATTGTGAGGGCGAGTGTAAGTTCGCCCGCCATGATCACTCAAANN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCGCCATGA
TCATTCGAACGAGAGCACCAACCACGCCCTTATACAAACACTTGTTAACC
TGATGTTCCCTAAATATGTACCACCGCCCTGTTGCGCCCCCATACGGCTG
GAACCACTTCAAGTTTTGTTTTTGGATGAGCGGAATAATGTTATTATGAA
GAAATATGCGAATATGGTTGTCAACGATTGTGCATGTCAGTAAAAATATT
TACAGCAGTAGTGTACATGCGTAGTAAATAATCGTTTTATGCGCATACGT
AGTATAAAAAGATATTACgcttagcaaaaaaaaacaattgctAGATATTA
CGCATTCATTTATGCCGTAATGCAAATATGGAGAAGTTCTGAGGAATAAA
ATTGCCGAGTTTATGTATgagtgtttttctgcgacggagacggtaaggtt
ctagtTTGATCCTGACCAACtaaggacgacggtaaatcaccacttttacc
gtcctcgattttgcaggtcagaactgcgggttattccaaatcgcctcagt
cactttaccgtcctcaaaaacGCAAAtccataaactcgctattattgAAA
GCGCCATAGTAATGGCAACACATGTTAGAAATTGAGAGACCCTTACTTAT
CATACAAATGTAAGGACATCTTTGAAACAAGTTAACGGAAAgacttttga
tttttgtgagaGAAAAACGAAGAGCCAAAAagagttttatttattttttt
tgtagttTTACGTTAGTACTAAAGTTATCTTAAATGAACTGAATATAGAC
TTTTGCgggaatttcttaaaaaaaggctaagagatgcttaggtcgaaagc
ttaataaggctgaaaaatgcttgagggatgcttatatcctaatacttaat
actgcTTATACTGCTATACTACTATAAAACTACTTATATCCATTCTACAA
AGTAacttatacttttttcataggctcgaggtaatgcttagcatatgctt
aatttttccccatatctaagcctagatatgcttacaagtgcaatgcttat
aaaaaacatgtactagTTTTGCGAGATGATGGGTATGGCCGAGCTAATGT
TCAAAAATCAACCCTGTGACTATTGGAAgagattaaaaatgtttttaaaa
tgttcttattttcaccattttatgagtatttttgaaacatttctgCGATC
TTCTAAGAAAGAGGTGTTTTAGAGCGTAAAGCCTTGAAATACTCATGAAT
TCTTTTGGCCGTCGAAACCCTGATGTgcttatacagtttgttcttataaa
aacgtgtatctagaaaagaaaatattgcaCGTGCGGGAAAAACAATTGTC
CTGGAATTCTGCGTCAGTTTCAAACATTTTTGGCAAGAATTAATTTTGAC
GAACGACCCATTTCATAGGCGTAGcaagataccctgcaaaatttatggat
gagagtggtttttacgacactgtaattattgtctttgttttatcaaaaga
taatgaatgtcataaacgtctgcactccttcataaattttgcagggtatc
tcgctacgcctatgcatttttgttcaatattttagctgaagAAAGAGGGG
AAAAGGGttttaggagaaatagagactaaattgaaagaaaattaaatttg
acgggaatttgGTGAAGAacctataaatttaaatttggcggaaagaaatt
ttttcccttaaggtaaattTTATTTAAGACGACAAATGTAAGGAGCAGGT
TTTCTAATTTGGCTTTCTAGAAATCTCAAACCCTGTTTTGAAACCTTCAA
ATCGCCAGTGGGAAACCGTAGATTTAAGCATACTTTAATCGGAATATTTT
TCGCGAGATTTCATTTCGTaaaaaaaaaatcgcgaaaacttcgatattta
ttttgaaagataattttaGATATGCGTATCccaaagaaaaattattgaat
GTGGCCCTGTAAACATGGTGTATT
Run BLAST on NCBI

protein sequence of TCONS_00010860-protein

>TCONS_00010860-protein ID=TCONS_00010860-protein|Name=TCONS_00010860-protein|organism=Clytia hemisphaerica|type=polypeptide|length=478bp
MAAKLFTIIFLLVTYSATISSISVSKQPKNNNKEITNNNGGSNDDNKTPC
QRKIEEDEKRRAAIRKDMLDLFGIQFRPNPDLFGHLSRNTLSAKKYMYDL
YKTSVTSDCVTSQPKQTNVTMEMMKDADTVVSFVNTNALVPRPNISDEDG
SMYFDVQSNFVVKRTLASELRLYLDASNKTVPDSRLRVTLYEIVVPKKRY
RKLVSIEINATESAWHGLDVLDATKRWKQDSTTNNGVLVVCQTLDKKMKS
LADCGLVDFKGENENKPFLVSFYQSGDEEEILAEQVPWKEEEEIYKSSEH
ARRRRALEGLKDLFPQVENIASGFGGMSGGPNKKNTSICKRKPLFIGFKD
LGWSDWIMAPEGYKASYCEGECKFARHDHSXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXRHDHSNESTNHALIQTLVNLMFPKYVPPPCCAPIRLEP
LQVLFLDERNNVIMKKYANMVVNDCACQ
Run BLAST on NCBI

transcript from alignment at sc0000118:24055..32147+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010860 ID=TCONS_00010860|Name=TCONS_00010860|organism=Clytia hemisphaerica|type=transcript|length=8093bp|location=Sequence derived from alignment at sc0000118:24055..32147+ (Clytia hemisphaerica)
catcaagcagagtaGACTGATGTTTATGACCATTTTATGCAGATATTCAA
ATTTGACCTCCTCCCCCCCCATGGTGCAATCCCAAGTTTTTACAATACTA
AAACGCTCCATGTGTGTGGACCAAAGTAACATCTTCATTATCATTTCAGA
AAAACTAAAGCAAATTTCCAAAATACACTTAATCAAAGATACAGAcgcaa
aacaaaatggcagccAAGTTATTTACAATCATCTTTCTACTGGTCACCTA
TTCAGCTACCATTTCTAGCATCTCTGTATCCAAGCAAccgaaaaacaaca
acaaagaaaTCACTAACAATAATGGCGGCAGCAATGATGACAATAAAACG
CCTTGTCAGCGAAAAATAGAAGAAGATGAAAAGCGAAGAGCTGCTATTCG
GAAAGACATGTTAGATTTATTTGGTATACAGTTCCGTCCGAACCCCGATC
TTTTCGGACACTTAAGCCGTAACACACTGTCCGCTAAGAAATACATGTAT
GATTTATATAAAACATCAGTGACGTCAGACTGTGTGACGTcacaaccaaa
acaaacgaACGTTACCATGGAAATGATGAAAGATGCGGATACTGTGGTCA
GTTTTGTCAACACTAATGGTGAGTCAGCAAAAATACTTTATTAACTGTTG
ACAGTTAACTTTTACTTTTGGATCTTATTTGACAGGTTTCTCTgttattg
cgaagcgaatatacatgagcgaagcagttttgctatcgtgtatatgtacc
tttaaatctcacctacgctggggagcgcaaatgaaaaattacNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGG
AGAGACctggaattacggatggttaaattcgtttttttcaaaaagtgtcg
cctcgtgcgtttagatataccaattcttaaaagctaAGGAGATAATACAC
GCGGTCACCAGTACTAGATAAGCCTTGTTTTTATCTCCTtaaggtttaaa
ttaggaaatctaaagaagaggtcggaaaatcagcgcgggctggaagcgtt
caagaagcgttcaaatggcgctcatttttcaagaagtcattgcattgact
cgagCAAACTCTTTCGAAgggctttcgaacttttccaaattcgaaaGTTG
ACTGAAAACaacattgttttgaaaagagaaattggtgttttgaaaagaga
tggtgcttgatgaaaagaaacgaagaaagcagCTGAACTTGCGGAATGAG
AAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCTATATCTC
AGTTTTCtttatctggtttttctttatttttatctcaggattttacagcg
ctaatagtttagatataattttagaactttgttaaatttAGGATGCAATG
TAATGATACAATATATATTCCTAATTAATATGGTTATCcggttattgaat
tttgaaactacttaagtcaacttatttctattaaattctagtcttgaaat
cctctgtgtttcacatctctgtctcaataaaccgagtgatgtttaaagtt
tgtttaactttttttgattctctgggctctttgcaaggaagaccttttga
agaggctagagaggtattttccctcccgggaagaaattattgccaagttt
tccagcgggtctatgacacaggggtgtttattaGTCAGGCACATCCCGCG
ATCGCGTCatacaggggtgtttatgttaggtaaaaagtttttgaatgtta
tttttattcgaacgttcgaacgttcgaaatttaaaattaattagaaagat
tcgaatgttcgattttgaacgcaaaagttcgaaaccggaagtaaaacgag
tctaaaacaaaaactaagaaataaaaatactcaaggctcagggcggacaa
atgattattgaacttttcacAACGATTCATGAAAAAAACCATATAATTTT
CCTCAAATCCGTAGAAGTAAACGTCGTAAAGAGGCTCGGTCTTCCTGAAC
CTGAGCAGTTGTCGGGGTTTCGCGGggtttacatttacgaattgatcatg
aatctattttaacttgcaatttctagtgtgtgaccctataaatattttgc
ttgcaacttgcgaatcgagtgacttgcctggatcgcttcgcaattcttat
acatatacactagttcatgatatgcaccactggagcgTCCTCcatgattt
tttaaaatttccacccaatacgtcactttttctactttttaagtgacgta
ttcatgatatgcaccattgcaatgtcttctgacattaaaTCACGGACCCA
ACTACCGTGAGTATCAAAGCTCGAACAAAATATcgaatattttaatattt
tctctatGAAAACTTGGCTTCTGGTACTGTAAAATTAGtcaactttcaac
caatcagctgttgggtccgtggaagacattgcaatggtgcatatcatgaa
ttggatggaaaattttaaaagttctcagaagactctccagtggtgcatat
catgactTTGAGCGCTTGTTCATGTACGGGGGGGGGATGACCAACGAATT
ATCCGTACTTCCCAAGCAGTTCCGCAGAAAAGAGggacgcaaaatttgtg
taggaaagcagatttttatgacacagtaatattttcttataatatgaaaa
gataataacattgtcataaaaatctgccctcccacacaaattttgcgccc
ctcttgtctacCCTACTACCCAGGGGGATCGACCCAGGTAGTCGGCGGGG
ATGTACCTTCATGTATGTATAGATTAGCTTTAAGACGCGTCGAGGCTTGT
GAGTACTATCTATAATGGAAAAATGAGTCATAACAAAAAATCGCTAAATC
TTCTGTAATAAAGCGATTTCCCtatcaaaaattttaacactGTCTTCTCA
ACAAATTATCACCTTTCTTTTAATCAACACAAACGATTATCTCGTCAAAG
AATTCTTAAGAGAGAgatttaaatcttcaaaatcctTTAAGAATTTATGC
GGATTTTCATCTTTAGTAGTAGCgcaaatattttgacaaatcatctaaaa
aacatttcaattaaTTTAGCGTACGTGATCACTTCAACCAATCTGAACCG
AAATTCCAATGAGTGAATGAGTTACTCCTTtcatctcatggttgattgaa
attcgattgacgtttttgcttacgttaatttgtaatttcccgcaaacctg
taatttccctcctagcttttgtaattcccctcctagattttgtaatttcc
aacaaaagtgaaatttccatcgtttggaaattcaccatctttttcgaatt
tcttactaacttcgaaggcttaagtaaatggaataccATCCATCtaaaac
tcgattcgcgtttctatgacttttttgaaacctgtttttaaagtttcaga
ttgatttccagtgttaagTTGACGTCTTTCAGAGTTGTTAGAATTACAAT
CCAAACCATGAGgttaaccaggaatcccatgcttgttttcgtgaaattcg
ggataaattaccctcggtcaaatttcgaaatgttttaaatttccaaaGCT
CACGTATAGGGGTTAAACTACCATTTTGGCTagaatttcaaattcatttt
attgaCGCGACTATGATTTATTTAAGACCGCTATCATTTTAATTTGATGT
GATTatagaagagagaaaaagaaaaaggggCGGTTTGTAAAAATAAGTAA
TTTAATTTACGGTTAGTTATACAAAATGATCAttgaatttaaaagatttt
ggagCAAGATAAACATCTGTGGCACGTTCTTATTNGATCAttgaatttaa
agattttggagCAAGATAAGGATCTGTGGCACGTTCTTATTGTTGGTTTA
ATCAAATTTAATGTTCTTTCCAAACCAGCGGGAGGGATAGATTGATAAGC
TTCTTGatatcaaaattatctttttcgtgatattcattacttaatgtttt
ttttacgGAAACACCTCGATTTTTAACCAGTAGTGACAAATTCAAGctac
agaaaaaaaagtttaaaatttgccacttctggcattccatagaaaacatt
acgtcacaaaaatcatgaattccAAAGTGCactattgaaaaattttcaag
taaATTTATGGTGCACGAATCTAAGCCTGTACAAGTTCTTTTGTTGTGTT
CTGAAGTCAGATATAGATAACACATTATTGCTCCAACATGTGAACAAACT
TCCCTGAGACCAGCCATGCAATTACAGTGGGCATTAATGATTTCACAGTC
TGCTTTAATTGAAGTCCAATAATGCAGTGCAGTTTGAGTGAATTGACTTT
GCCCATGCCTCACTCGAACATTACATTCTTTGCGACCTTACCTCGGAATC
CTGGAGATGTAAAAATACTCATTATACACCATATAAGCCTTGTTGTCAAC
ATACTTTTGCTCTAGATACCCGGGATGATGTTGTTTCACTATTTCTATTA
GAATTTTTACGGCTGTTGAAACTGTACATACTTATCCCGTCGATTATAAC
ACGCTAAAGGTGGAAAAATTCGTCGGataaaaatgacgaaaaaacCGTTT
AGTGAGGGCCGACGGATAATGTAGACATATTAGATCTACATCTAACTCTT
TCTCGGACACGTCATTCATGCAACATAATTCACAAAAATGTTCTGCTTTA
AAACCAAATTGATGATTCTCGTTTTGTTGCTTTTTAGCCTTGGTTCCAAG
ACCCAATATAAGTGATGAGGATGGAAGTATGTATTTTGACGTTCAGTCTA
ATTTTGTCGTGAAGCGTACACTAGCCTCTGAGCTTCGTCTTTACCTTGAC
GCATCGAATAAAACCGTTCCTGATTCACGACTCCGTGTAACATTGTACGA
AATTGTTGTTCCAAAGAAACGGTACCGAAAACTCGTTTCCATAGAGATTA
ACGCAACAGAATCAGCATGGCATGGTCTCGATGTCCTTGATGCGACGAAA
CGTTGGAAACAAGACTCGACTACTAATAATGGCGTCTTAGTAGTGTGTCA
GACATTGGATAAGAAAATGAAATCGTTAGCTGATTGTGgattggttgatt
ttaaggGAGAAAATGAGAATAAACCGTTTTTGGTCTCGTTTTACCAATCG
GGAGACGAAGAAGAGATTTTGGCTGAGCAAGTCCCTTggaaggaagaaga
agaaatttacAAGAGCAGTGAGCATGCGCGGAGACGGAGAGCGCTTGAAG
GGCTAAAAGATCTGTTCCCGCAGGTGGAAAATATCGCGTCCGGGTTTGGA
GGTATGTCCGGAGGGCCTAATAAGAAGAATACGtctatttgtaaacgaaa
accACTTTTTATTGGCTTCAAAGATTTGGGATGGTCGGATTGGATAATGG
CACCTGAAGGATACAAAGCGTCCTATTGTGAGGGCGAGTGTAAGTTCGCC
CGCCATGATCACTCAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNCCCGCCATGATCATTCGAACGAGAGCACCAACCACGCCCTT
ATACAAACACTTGTTAACCTGATGTTCCCTAAATATGTACCACCGCCCTG
TTGCGCCCCCATACGGCTGGAACCACTTCAAGTTTTGTTTTTGGATGAGC
GGAATAATGTTATTATGAAGAAATATGCGAATATGGTTGTCAACGATTGT
GCATGTCAGTAAAAATATTTACAGCAGTAGTGTACATGCGTAGTAAATAA
TCGTTTTATGCGCATACGTAGTATAAAAAGATATTACgcttagcaaaaaa
aaacaattgctAGATATTACGCATTCATTTATGCCGTAATGCAAATATGG
AGAAGTTCTGAGGAATAAAATTGCCGAGTTTATGTATgagtgtttttctg
cgacggagacggtaaggttctagtTTGATCCTGACCAACtaaggacgacg
gtaaatcaccacttttaccgtcctcgattttgcaggtcagaactgcgggt
tattccaaatcgcctcagtcactttaccgtcctcaaaaacGCAAAtccat
aaactcgctattattgAAAGCGCCATAGTAATGGCAACACATGTTAGAAA
TTGAGAGACCCTTACTTATCATACAAATGTAAGGACATCTTTGAAACAAG
TTAACGGAAAgacttttgatttttgtgagaGAAAAACGAAGAGCCAAAAa
gagttttatttattttttttgtagttTTACGTTAGTACTAAAGTTATCTT
AAATGAACTGAATATAGACTTTTGCgggaatttcttaaaaaaaggctaag
agatgcttaggtcgaaagcttaataaggctgaaaaatgcttgagggatgc
ttatatcctaatacttaatactgcTTATACTGCTATACTACTATAAAACT
ACTTATATCCATTCTACAAAGTAacttatacttttttcataggctcgagg
taatgcttagcatatgcttaatttttccccatatctaagcctagatatgc
ttacaagtgcaatgcttataaaaaacatgtactagTTTTGCGAGATGATG
GGTATGGCCGAGCTAATGTTCAAAAATCAACCCTGTGACTATTGGAAgag
attaaaaatgtttttaaaatgttcttattttcaccattttatgagtattt
ttgaaacatttctgCGATCTTCTAAGAAAGAGGTGTTTTAGAGCGTAAAG
CCTTGAAATACTCATGAATTCTTTTGGCCGTCGAAACCCTGATGTgctta
tacagtttgttcttataaaaacgtgtatctagaaaagaaaatattgcaCG
TGCGGGAAAAACAATTGTCCTGGAATTCTGCGTCAGTTTCAAACATTTTT
GGCAAGAATTAATTTTGACGAACGACCCATTTCATAGGCGTAGcaagata
ccctgcaaaatttatggatgagagtggtttttacgacactgtaattattg
tctttgttttatcaaaagataatgaatgtcataaacgtctgcactccttc
ataaattttgcagggtatctcgctacgcctatgcatttttgttcaatatt
ttagctgaagAAAGAGGGGAAAAGGGttttaggagaaatagagactaaat
tgaaagaaaattaaatttgacgggaatttgGTGAAGAacctataaattta
aatttggcggaaagaaattttttcccttaaggtaaattTTATTTAAGACG
ACAAATGTAAGGAGCAGGTTTTCTAATTTGGCTTTCTAGAAATCTCAAAC
CCTGTTTTGAAACCTTCAAATCGCCAGTGGGAAACCGTAGATTTAAGCAT
ACTTTAATCGGAATATTTTTCGCGAGATTTCATTTCGTaaaaaaaaaatc
gcgaaaacttcgatatttattttgaaagataattttaGATATGCGTATCc
caaagaaaaattattgaatGTGGCCCTGTAAACATGGTGTATT

Coding sequence (CDS) from alignment at sc0000118:24055..32147+

>TCONS_00010860 ID=TCONS_00010860|Name=TCONS_00010860|organism=Clytia hemisphaerica|type=CDS|length=2874bp|location=Sequence derived from alignment at sc0000118:24055..32147+ (Clytia hemisphaerica)
atggcagccAAGTTATTTACAATCATCTTTCTACTGGTCACCTATTCAGC
TACCATTTCTAGCATCTCTGTATCCAAGCAAccgaaaaacaacaacaaag
aaaTCACTAACAATAATGGCGGCAGCAATGATGACAATAAAACGCCTTGT
CAGCGAAAAATAGAAGAAGATGAAAAGCGAAGAGCTGCTATTCGGAAAGA
CATGTTAGATTTATTTGGTATACAGTTCCGTCCGAACCCCGATCTTTTCG
GACACTTAAGCCGTAACACACTGTCCGCTAAGAAATACATGTATGATTTA
TATAAAACATCAGTGACGTCAGACTGTGTGACGTcacaaccaaaacaaac
gaACGTTACCATGGAAATGATGAAAGATGCGGATACTGTGGTCAGTTTTG
TCAACACTAATGCCTTGGTTCCAAGACCCAATATAAGTGATGAGGATGGA
AGTATGTATTTTGACGTTCAGTCTAATTTTGTCGTGAAGCGTACACTAGC
CTCTGAGCTTCGTCTTTACCTTGACGCATCGAATAAAACCGTTCCTGATT
CACGACTCCGTGTAACATTGTACGAAATTGTTGTTCCAAAGAAACGGTAC
CGAAAACTCGTTTCCATAGAGATTAACGCAACAGAATCAGCATGGCATGG
TCTCGATGTCCTTGATGCGACGAAACGTTGGAAACAAGACTCGACTACTA
ATAATGGCGTCTTAGTAGTGTGTCAGACATTGGATAAGAAAATGAAATCG
TTAGCTGATTGTGgattggttgattttaaggGAGAAAATGAGAATAAACC
GTTTTTGGTCTCGTTTTACCAATCGGGAGACGAAGAAGAGATTTTGGCTG
AGCAAGTCCCTTggaaggaagaagaagaaatttacAAGAGCAGTGAGCAT
GCGCGGAGACGGAGAGCGCTTGAAGGGCTAAAAGATCTGTTCCCGCAGGT
GGAAAATATCGCGTCCGGGTTTGGAGGTATGTCCGGAGGGCCTAATAAGA
AGAATACGtctatttgtaaacgaaaaccACTTTTTATTGGCTTCAAAGAT
TTGGGATGGTCGGATTGGATAATGGCACCTGAAGGATACAAAGCGTCCTA
TTGTGAGGGCGAGTGTAAGTTCGCCCGCCATGATCACTCAAANNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCGCCATGATCATTC
GAACGAGAGCACCAACCACGCCCTTATACAAACACTTGTTAACCTGATGT
TCCCTAAATATGTACCACCGCCCTGTTGCGCCCCCATACGGCTGGAACCA
CTTCAAGTTTTGTTTTTGGATGAGCGGAATAATGTTATTATGAAGAAATA
TGCGAATATGGTTGTCAACGATTGTGCATGTCAGTAAatggcagccAAGT
TATTTACAATCATCTTTCTACTGGTCACCTATTCAGCTACCATTTCTAGC
ATCTCTGTATCCAAGCAAccgaaaaacaacaacaaagaaaTCACTAACAA
TAATGGCGGCAGCAATGATGACAATAAAACGCCTTGTCAGCGAAAAATAG
AAGAAGATGAAAAGCGAAGAGCTGCTATTCGGAAAGACATGTTAGATTTA
TTTGGTATACAGTTCCGTCCGAACCCCGATCTTTTCGGACACTTAAGCCG
TAACACACTGTCCGCTAAGAAATACATGTATGATTTATATAAAACATCAG
TGACGTCAGACTGTGTGACGTcacaaccaaaacaaacgaACGTTACCATG
GAAATGATGAAAGATGCGGATACTGTGGTCAGTTTTGTCAACACTAATGC
CTTGGTTCCAAGACCCAATATAAGTGATGAGGATGGAAGTATGTATTTTG
ACGTTCAGTCTAATTTTGTCGTGAAGCGTACACTAGCCTCTGAGCTTCGT
CTTTACCTTGACGCATCGAATAAAACCGTTCCTGATTCACGACTCCGTGT
AACATTGTACGAAATTGTTGTTCCAAAGAAACGGTACCGAAAACTCGTTT
CCATAGAGATTAACGCAACAGAATCAGCATGGCATGGTCTCGATGTCCTT
GATGCGACGAAACGTTGGAAACAAGACTCGACTACTAATAATGGCGTCTT
AGTAGTGTGTCAGACATTGGATAAGAAAATGAAATCGTTAGCTGATTGTG
gattggttgattttaaggGAGAAAATGAGAATAAACCGTTTTTGGTCTCG
TTTTACCAATCGGGAGACGAAGAAGAGATTTTGGCTGAGCAAGTCCCTTg
gaaggaagaagaagaaatttacAAGAGCAGTGAGCATGCGCGGAGACGGA
GAGCGCTTGAAGGGCTAAAAGATCTGTTCCCGCAGGTGGAAAATATCGCG
TCCGGGTTTGGAGGTATGTCCGGAGGGCCTAATAAGAAGAATACGtctat
ttgtaaacgaaaaccACTTTTTATTGGCTTCAAAGATTTGGGATGGTCGG
ATTGGATAATGGCACCTGAAGGATACAAAGCGTCCTATTGTGAGGGCGAG
TGTAAGTTCGCCCGCCATGATCACTCAAANNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNCCCGCCATGATCATTCGAACGAGAGCACC
AACCACGCCCTTATACAAACACTTGTTAACCTGATGTTCCCTAAATATGT
ACCACCGCCCTGTTGCGCCCCCATACGGCTGGAACCACTTCAAGTTTTGT
TTTTGGATGAGCGGAATAATGTTATTATGAAGAAATATGCGAATATGGTT
GTCAACGATTGTGCATGTCAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006101XLOC_006101Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010860-proteinTCONS_00010860-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010860-exon-sc0000118-1491911889:24055..24672TCONS_00010860-exon-sc0000118-1491911889:24055..24672Clytia hemisphaericaexon
TCONS_00010860-exon-sc0000118-1510915933:24055..24672TCONS_00010860-exon-sc0000118-1510915933:24055..24672Clytia hemisphaericaexon
TCONS_00010860-exon-sc0000118-1575043694:24055..24672TCONS_00010860-exon-sc0000118-1575043694:24055..24672Clytia hemisphaericaexon
TCONS_00010860-exon-sc0000118-1491911889:29392..32147TCONS_00010860-exon-sc0000118-1491911889:29392..32147Clytia hemisphaericaexon
TCONS_00010860-exon-sc0000118-1510915933:29392..32147TCONS_00010860-exon-sc0000118-1510915933:29392..32147Clytia hemisphaericaexon
TCONS_00010860-exon-sc0000118-1575043694:29392..32147TCONS_00010860-exon-sc0000118-1575043694:29392..32147Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000118supercontigsc0000118:24055..32147 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0603047	0.0990608	0.20977	0.241086	1.88752	1.42944	2.39376	2.87798	2.60477	2.67682	2.37488	3.08947	15.7994	16.1018	3.80817	2.73659	21.047	19.577	18.6862	23.0477	15.1876	14.3421	3.99415	5.28704	15.2125	12.2383	1.58738	0.653117	0.126283	0.0953509
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001839TGF-b_C
IPR029034Cystine-knot_cytokine
IPR001111TGF-b_propeptide
IPR017948TGFb_CS
Vocabulary: Molecular Function
TermDefinition
GO:0008083growth factor activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008083 growth factor activity
Blast
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BLAST of TCONS_00010860 vs. Swiss-Prot (Human)
Match: BMP5 (Bone morphogenetic protein 5 OS=Homo sapiens GN=BMP5 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 2.379e-47
Identity = 131/481 (27.23%), Postives = 202/481 (42.00%), Query Frame = 3 
Query:  360 RKIEEDEKRRAAIRKDMLDLFGIQFRPNPDLFGHLSRNTLSAKKYMYDLY------------------------------------------KTSVTSDCVTSQPKQTNVT-MEMMKDADTVVSFVNTNALVPRPNISDEDGSMY----FDVQSNFVVKRTLASELRLYLDASNKTVPDSRLRVTLYEIVVPKKRYRK-------LVSIEINATESAWHGLDVLDATKRWKQDSTTNNGVLVVCQTLDKKMKSLADCGLVDFKGENENKPFLVSFYQSGDEEEILAEQVPWKEEEEIYKSSEHARRRRALEGLKDLFPQVENIASGFGGMSGGPNKKNTSICKRKPLFIGFKDLGWSDWIMAPEGYKASYCEGECKFARHDHSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHDHSNESTNHALIQTLVNLMFPKYVPPPCCAPIRLEPLQVLFLDERNNVIMKKYANMVVNDCACQ 1640
            R++   E+R   I++++L + G+  RP P   G   +   SA  +M DLY                                          + S T+   T  P   ++     + DAD V+SFVN   LV R          Y    FD+      +   A+E R+Y D SN    +  +++++Y+I+   K Y         L + +  A +  W   D+   +  W  +   N G+ +  +T D +  ++   GLV  +G    +PF+V+F+               K  E + +S   A +R+     K    Q  +  S  G  +    K+    CK+  L++ F+DLGW DWI+APEGY A YC+GEC F  + H                                        +TNHA++QTLV+LMFP +VP PCCAP +L  + VL+ D+ +NVI+KKY NMVV  C C 
Sbjct:   41 RRLRNHERRE--IQREILSILGLPHRPRPFSPG---KQASSAPLFMLDLYNAMTNEENPEESEYSVRASLAEETRGARKGYPASPNGYPRRIQLSRTTPLTTQSPPLASLHDTNFLNDADMVMSFVN---LVERDKDFSHQRRHYKEFRFDLTQIPHGEAVTAAEFRIYKDRSNNRFENETIKISIYQII---KEYTNRDADLFLLDTRKAQALDVGWLVFDITVTSNHWVINPQNNLGLQLCAETGDGRSINVKSAGLVGRQGPQSKQPFMVAFF---------------KASEVLLRSVRAANKRKNQNRNKSSSHQDSSRMSSVGDYNTSEQKQ---ACKKHELYVSFRDLGWQDWIIAPEGYAAFYCDGECSFPLNAHM--------------------------------------NATNHAIVQTLVHLMFPDHVPKPCCAPTKLNAISVLYFDDSSNVILKKYRNMVVRSCGCH 454
The following BLAST results are available for this feature:
BLAST of TCONS_00010860 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BMP52.379e-4727.23Bone morphogenetic protein 5 OS=Homo sapiens GN=BM... [more]
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