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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010854 ID=TCONS_00010854|Name=TCONS_00010854|organism=Clytia hemisphaerica|type=transcript|length=1532bp
AGAAATTGGTTGATATAAGGTTATCTGAAAATATAAGTCTAAGATATTTT
TCCCTACTACATTTTTAAAAGTTCGATAATATTTTACATTAATGTATATT
TTAAATTTCCATGTCTTATCATTAtaattatttaatattttcaaagattt
tttaaagcagaTATAAAATAACATGTAAATATTNcaaaacacttgaaagg
cttctatttttcgaaaatcgtcaaagtggaactcactaagaaacgagatg
aaaaatcccggtttttagtgaggtgctcgctaacaTTAAAGAGTCTATTT
TTGCGTCGTTTATGTCGCAGGTTTCACGTCTTTTTCGATGATGGTAATCC
ATAAAGTTGTGACGTCAAGTTCTGTTTATCAACCATCATCCCATTCTCAA
TAAGTGCACGTTGTTCTAAAAATCTCAAACATCGATCTTGTTTCACTGGA
TGTGTAACCATTAAATGTTCATTGTACTCACACCAGTTATTCCACATATA
GAAACCACGTACCGATTTTGCTTTATATCCCGATCGGAATACTAAATGTC
CAATATAAGCGTCATCAATCTTAAGCGGGGTTAACCAATCAAACAACGAA
ATCATTCTACTGATTGCAACATTTGAGAGAATGAATCCGCCTCCGGAACA
ATACGGGTCAAAACGATCATTCTTATGTTCCTCTGCCGTAAGCCCGTAAC
GACCCTTACGTTCCACCGGCTGTCCTGACATGACGGATCCAATATAATGC
TCATTTCGAAAATCACCATCTAATTTTGCTAACACCCTGTCTACATGTAC
AAAAACATCGTCGTCACCTTTTAAGACAAAATCAAATTTAAGGGCAAAGA
AAGCCCAGTGTAAACCAACCATTACTTTGAAAGACAGTTGATAAAAACTT
TCAGGAACATCTTCCAAGATGACGTCACCGTGCGTTTTGGATTCTTTCTT
GATTTTCAGCATTGTGTTTTTATTGTCAATAACACCCAAAACGAAAACAA
ctttccattttttattttgtgtaaTCCACATTGATGCATTACCCCATGTT
CGACGGATTTTTTCTCGCCGCTCAAAATGCGCTGCGTGTGATGAGATTAA
TATGATCAGGTCATAACGTGTACTACAGTCAAGTTTTACATCATCTAACA
CGATATGTGGATTCCTTAAATCCGCTTTGGGTGGACTTTTCTCGTCAAGC
GTCTTCCATAACTCCATTCGATCAATTTGTATTTTCTCCCAAGCTTTCAT
TCCATACACGCCTTCCTTTACTGACGTCATTTCTTTACGTATCTCTTTCA
AATACgtttcgaatttttcaaaatggcggcttAAGTTTTGACGTTCCTCG
TTTTGCTTGTTGTTATGGATATAGACATGCTTTGTTGGGTTTGAGTTCCC
TGCACCAGTAATGAATAAATTCAGGTTAACAGTCATAAAAGCGGTCATTA
TGAAACCGACCATAAAGGTCATCGCTAGCATCATGTATTTCACCATTCTT
GTTGAAAAAGTAATCCCGATGTTTGTTTTCTG Run BLAST on NCBI protein sequence of TCONS_00010854-protein >TCONS_00010854-protein ID=TCONS_00010854-protein|Name=TCONS_00010854-protein|organism=Clytia hemisphaerica|type=polypeptide|length=402bp
QKTNIGITFSTRMVKYMMLAMTFMVGFIMTAFMTVNLNLFITGAGNSNPT
KHVYIHNNKQNEERQNLSRHFEKFETYLKEIRKEMTSVKEGVYGMKAWEK
IQIDRMELWKTLDEKSPPKADLRNPHIVLDDVKLDCSTRYDLIILISSHA
AHFERREKIRRTWGNASMWITQNKKWKVVFVLGVIDNKNTMLKIKKESKT
HGDVILEDVPESFYQLSFKVMVGLHWAFFALKFDFVLKGDDDVFVHVDRV
LAKLDGDFRNEHYIGSVMSGQPVERKGRYGLTAEEHKNDRFDPYCSGGGF
ILSNVAISRMISLFDWLTPLKIDDAYIGHLVFRSGYKAKSVRGFYMWNNW
CEYNEHLMVTHPVKQDRCLRFLEQRALIENGMMVDKQNLTSQLYGLPSSK
KT Run BLAST on NCBI transcript from alignment at sc0000117:539576..541107 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010854 ID=TCONS_00010854|Name=TCONS_00010854|organism=Clytia hemisphaerica|type=transcript|length=1532bp|location=Sequence derived from alignment at sc0000117:539576..541107 (Clytia hemisphaerica)
CAGAAAACAAACATCGGGATTACTTTTTCAACAAGAATGGTGAAATACAT
GATGCTAGCGATGACCTTTATGGTCGGTTTCATAATGACCGCTTTTATGA
CTGTTAACCTGAATTTATTCATTACTGGTGCAGGGAACTCAAACCCAACA
AAGCATGTCTATATCCATAACAACAAGCAAAACGAGGAACGTCAAAACTT
aagccgccattttgaaaaattcgaaacGTATTTGAAAGAGATACGTAAAG
AAATGACGTCAGTAAAGGAAGGCGTGTATGGAATGAAAGCTTGGGAGAAA
ATACAAATTGATCGAATGGAGTTATGGAAGACGCTTGACGAGAAAAGTCC
ACCCAAAGCGGATTTAAGGAATCCACATATCGTGTTAGATGATGTAAAAC
TTGACTGTAGTACACGTTATGACCTGATCATATTAATCTCATCACACGCA
GCGCATTTTGAGCGGCGAGAAAAAATCCGTCGAACATGGGGTAATGCATC
AATGTGGAttacacaaaataaaaaatggaaagTTGTTTTCGTTTTGGGTG
TTATTGACAATAAAAACACAATGCTGAAAATCAAGAAAGAATCCAAAACG
CACGGTGACGTCATCTTGGAAGATGTTCCTGAAAGTTTTTATCAACTGTC
TTTCAAAGTAATGGTTGGTTTACACTGGGCTTTCTTTGCCCTTAAATTTG
ATTTTGTCTTAAAAGGTGACGACGATGTTTTTGTACATGTAGACAGGGTG
TTAGCAAAATTAGATGGTGATTTTCGAAATGAGCATTATATTGGATCCGT
CATGTCAGGACAGCCGGTGGAACGTAAGGGTCGTTACGGGCTTACGGCAG
AGGAACATAAGAATGATCGTTTTGACCCGTATTGTTCCGGAGGCGGATTC
ATTCTCTCAAATGTTGCAATCAGTAGAATGATTTCGTTGTTTGATTGGTT
AACCCCGCTTAAGATTGATGACGCTTATATTGGACATTTAGTATTCCGAT
CGGGATATAAAGCAAAATCGGTACGTGGTTTCTATATGTGGAATAACTGG
TGTGAGTACAATGAACATTTAATGGTTACACATCCAGTGAAACAAGATCG
ATGTTTGAGATTTTTAGAACAACGTGCACTTATTGAGAATGGGATGATGG
TTGATAAACAGAACTTGACGTCACAACTTTATGGATTACCATCATCGAAA
AAGACGTGAAACCTGCGACATAAACGACGCAAAAATAGACTCTTTAAtgt
tagcgagcacctcactaaaaaccgggatttttcatctcgtttcttagtga
gttccactttgacgattttcgaaaaatagaagcctttcaagtgttttgNA
ATATTTACATGTTATTTTATAtctgctttaaaaaatctttgaaaatatta
aataattaTAATGATAAGACATGGAAATTTAAAATATACATTAATGTAAA
ATATTATCGAACTTTTAAAAATGTAGTAGGGAAAAATATCTTAGACTTAT
ATTTTCAGATAACCTTATATCAACCAATTTCT Coding sequence (CDS) from alignment at sc0000117:539576..541107 >TCONS_00010854 ID=TCONS_00010854|Name=TCONS_00010854|organism=Clytia hemisphaerica|type=CDS|length=1209bp|location=Sequence derived from alignment at sc0000117:539576..541107 (Clytia hemisphaerica)
CAGAAAACAAACATCGGGATTACTTTTTCAACAAGAATGGTGAAATACAT
GATGCTAGCGATGACCTTTATGGTCGGTTTCATAATGACCGCTTTTATGA
CTGTTAACCTGAATTTATTCATTACTGGTGCAGGGAACTCAAACCCAACA
AAGCATGTCTATATCCATAACAACAAGCAAAACGAGGAACGTCAAAACTT
aagccgccattttgaaaaattcgaaacGTATTTGAAAGAGATACGTAAAG
AAATGACGTCAGTAAAGGAAGGCGTGTATGGAATGAAAGCTTGGGAGAAA
ATACAAATTGATCGAATGGAGTTATGGAAGACGCTTGACGAGAAAAGTCC
ACCCAAAGCGGATTTAAGGAATCCACATATCGTGTTAGATGATGTAAAAC
TTGACTGTAGTACACGTTATGACCTGATCATATTAATCTCATCACACGCA
GCGCATTTTGAGCGGCGAGAAAAAATCCGTCGAACATGGGGTAATGCATC
AATGTGGAttacacaaaataaaaaatggaaagTTGTTTTCGTTTTGGGTG
TTATTGACAATAAAAACACAATGCTGAAAATCAAGAAAGAATCCAAAACG
CACGGTGACGTCATCTTGGAAGATGTTCCTGAAAGTTTTTATCAACTGTC
TTTCAAAGTAATGGTTGGTTTACACTGGGCTTTCTTTGCCCTTAAATTTG
ATTTTGTCTTAAAAGGTGACGACGATGTTTTTGTACATGTAGACAGGGTG
TTAGCAAAATTAGATGGTGATTTTCGAAATGAGCATTATATTGGATCCGT
CATGTCAGGACAGCCGGTGGAACGTAAGGGTCGTTACGGGCTTACGGCAG
AGGAACATAAGAATGATCGTTTTGACCCGTATTGTTCCGGAGGCGGATTC
ATTCTCTCAAATGTTGCAATCAGTAGAATGATTTCGTTGTTTGATTGGTT
AACCCCGCTTAAGATTGATGACGCTTATATTGGACATTTAGTATTCCGAT
CGGGATATAAAGCAAAATCGGTACGTGGTTTCTATATGTGGAATAACTGG
TGTGAGTACAATGAACATTTAATGGTTACACATCCAGTGAAACAAGATCG
ATGTTTGAGATTTTTAGAACAACGTGCACTTATTGAGAATGGGATGATGG
TTGATAAACAGAACTTGACGTCACAACTTTATGGATTACCATCATCGAAA
AAGACGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010854-exon-sc0000117-1491911889:539576..541107 | TCONS_00010854-exon-sc0000117-1491911889:539576..541107 | Clytia hemisphaerica | exon |
| TCONS_00010854-exon-sc0000117-1510915933:539576..541107 | TCONS_00010854-exon-sc0000117-1510915933:539576..541107 | Clytia hemisphaerica | exon |
| TCONS_00010854-exon-sc0000117-1575043694:539576..541107 | TCONS_00010854-exon-sc0000117-1575043694:539576..541107 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000117 | supercontig | sc0000117:539576..541107 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002659 | Glyco_trans_31 |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008378 | galactosyltransferase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006486 | protein glycosylation |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006486 |
protein glycosylation |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0008378 |
galactosyltransferase activity |
Blast
BLAST of TCONS_00010854 vs. Swiss-Prot (Human)
Match: B3GN4 (N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 4 OS=Homo sapiens GN=B3GNT4 PE=1 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 1.539e-27 Identity = 73/226 (32.30%), Postives = 111/226 (49.12%), Query Frame = -1
Query: 501 RNPHIVLDDVKLDCSTRYDLIILISSHAAHFERREKIRRTWGNASMWITQNKKWKVVFVLGVIDNKNTMLKIKKESKTHGDVILEDVPESFYQLSFKVMVGLHWAFFAL-KFDFVLKGDDDVFVHVDRVLAKLDG-DFRNEHYIGSVMSGQPVER--KGRYGLTAEEHKNDRFDPYCSGGGFILSNVAISRMISLFDWLTPLKIDDAYIGHLVFRSGYKAKSVRGF 1166
RN I+L+ CS L++ I S H ERR IR TWG W + ++ K+VF+LGV + + ES+ D++ D E F+ L+ K + W A + F+LKGDDDVFVHV VL LDG D + +G V+ R K +Y + ++ + PY GGG+++S + R+ ++ + IDD ++G + R G GF
Sbjct: 103 RNFSILLEPS--GCSKDTFLLLAIKSQPGHVERRAAIRSTWGRVGGW-ARGRQLKLVFLLGVAGSAPPAQLLAYESREFDDILQWDFTEDFFNLTLKELHLQRWVVAACPQAHFMLKGDDDVFVHVPNVLEFLDGWDPAQDLLVGDVIRQALPNRNTKVKYFIPPSMYRATHYPPYAGGGGYVMSRATVRRLQAIMEDAELFPIDDVFVGMCLRRLGLSPMHHAGF 325
The following BLAST results are available for this feature:
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