TCONS_00010852 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010852
Unique NameTCONS_00010852
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length256

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010852 ID=TCONS_00010852|Name=TCONS_00010852|organism=Clytia hemisphaerica|type=transcript|length=256bp
tcattcctagtccttttagacgaacgcggtccttacgatttcgagatgca
tattcgtcagattgttttgttttcacacatccctttagggCTTAAGTGTA
GGTGGACAGAAAACagtcacaatctgatctcaggttacttTAATGCGGCT
GTTCTGACATTGCCATCGAGGGGAAAATATCATTGTTTAAGCAATACCCC
CTGGAAAGATAATTCAGTGTGCATTTTTGTATTGAAATCTGTTTTCTAAA
AGTACG
Run BLAST on NCBI

transcript from alignment at sc0000117:516966..517221

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010852 ID=TCONS_00010852|Name=TCONS_00010852|organism=Clytia hemisphaerica|type=transcript|length=256bp|location=Sequence derived from alignment at sc0000117:516966..517221 (Clytia hemisphaerica)
CGTACTTTTAGAAAACAGATTTCAATACAAAAATGCACACTGAATTATCT
TTCCAGGGGGTATTGCTTAAACAATGATATTTTCCCCTCGATGGCAATGT
CAGAACAGCCGCATTAaagtaacctgagatcagattgtgactGTTTTCTG
TCCACCTACACTTAAGccctaaagggatgtgtgaaaacaaaacaatctga
cgaatatgcatctcgaaatcgtaaggaccgcgttcgtctaaaaggactag
gaatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006093XLOC_006093Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010852-exon-sc0000117-1491911889:516966..517221TCONS_00010852-exon-sc0000117-1491911889:516966..517221Clytia hemisphaericaexon
TCONS_00010852-exon-sc0000117-1510915933:516966..517221TCONS_00010852-exon-sc0000117-1510915933:516966..517221Clytia hemisphaericaexon
TCONS_00010852-exon-sc0000117-1575043694:516966..517221TCONS_00010852-exon-sc0000117-1575043694:516966..517221Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000117supercontigsc0000117:516966..517221 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	2.54612	1.58049	0.773129	0	1.00082	0	0.840052	3.04375	0	0.707106	0.47803	0	0	0.396313	0.532075	0	0.640645	2.18008	1.13391	0	0	0.800244	0.727538	0	0.668774	0	0	0.774658	1.11403
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010852 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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