TCONS_00010850 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010850
Unique NameTCONS_00010850
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length634

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010850 ID=TCONS_00010850|Name=TCONS_00010850|organism=Clytia hemisphaerica|type=transcript|length=634bp
TAATGAAAGATGCATCGAATAAAGGTGCTTCGATACAATATTCAACAACA
TTCAAATCAAGTGCAcaatttggttgaaaaatatttgataccAACTTATT
ACAAACGTTTGGGAATCAGTGAGACAGAAAGATCAACGTATATGGATTTT
GAAGACTGTTTGGACCCTGGGTATACTCAAAATCAGAAATTTCAGGATGC
CTCGTATATTGCAATAGAGGAATCCGGACGAATTATTGCATGCACTATGA
ATTATTTCGTCCCTAAACAAACATTTCAAAAGGTCTTTATCGATAGTCAA
AAATCGGTTTCAGAGGACAACACATTACCGGACACTGTTCGCAAATACTT
CCGACATCGATATGACGTTTGCCACGATCTTATGAAACCTTTGTATGAGG
ACCATAAATTAGATACTGTATTGTATTTGGAGAGTGGAATAGTTATTCCA
GAGTATCGAAGATTAAAACTCAccaataaaattttatcaaaaatttatgC
AAGATTTGGTGCAGACTATGGAATATTTTGTGAAGGCATGATACCGAATA
AACATGTACTTTCTGGAGAAGTAAATCCCAAATTTATTGTTCCTGGTGTC
GATGGGCTGGACGTGATTAAAAGTTTGCTTTCGT
Run BLAST on NCBI

protein sequence of TCONS_00010850-protein

>TCONS_00010850-protein ID=TCONS_00010850-protein|Name=TCONS_00010850-protein|organism=Clytia hemisphaerica|type=polypeptide|length=208bp
MHRIKVLRYNIQQHSNQVHNLVEKYLIPTYYKRLGISETERSTYMDFEDC
LDPGYTQNQKFQDASYIAIEESGRIIACTMNYFVPKQTFQKVFIDSQKSV
SEDNTLPDTVRKYFRHRYDVCHDLMKPLYEDHKLDTVLYLESGIVIPEYR
RLKLTNKILSKIYARFGADYGIFCEGMIPNKHVLSGEVNPKFIVPGVDGL
DVIKSLLS
Run BLAST on NCBI

transcript from alignment at sc0000117:499092..499725

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010850 ID=TCONS_00010850|Name=TCONS_00010850|organism=Clytia hemisphaerica|type=transcript|length=634bp|location=Sequence derived from alignment at sc0000117:499092..499725 (Clytia hemisphaerica)
ACGAAAGCAAACTTTTAATCACGTCCAGCCCATCGACACCAGGAACAATA
AATTTGGGATTTACTTCTCCAGAAAGTACATGTTTATTCGGTATCATGCC
TTCACAAAATATTCCATAGTCTGCACCAAATCTTGcataaatttttgata
aaattttattggTGAGTTTTAATCTTCGATACTCTGGAATAACTATTCCA
CTCTCCAAATACAATACAGTATCTAATTTATGGTCCTCATACAAAGGTTT
CATAAGATCGTGGCAAACGTCATATCGATGTCGGAAGTATTTGCGAACAG
TGTCCGGTAATGTGTTGTCCTCTGAAACCGATTTTTGACTATCGATAAAG
ACCTTTTGAAATGTTTGTTTAGGGACGAAATAATTCATAGTGCATGCAAT
AATTCGTCCGGATTCCTCTATTGCAATATACGAGGCATCCTGAAATTTCT
GATTTTGAGTATACCCAGGGTCCAAACAGTCTTCAAAATCCATATACGTT
GATCTTTCTGTCTCACTGATTCCCAAACGTTTGTAATAAGTTggtatcaa
atatttttcaaccaaattgTGCACTTGATTTGAATGTTGTTGAATATTGT
ATCGAAGCACCTTTATTCGATGCATCTTTCATTA

Coding sequence (CDS) from alignment at sc0000117:499092..499725

>TCONS_00010850 ID=TCONS_00010850|Name=TCONS_00010850|organism=Clytia hemisphaerica|type=CDS|length=624bp|location=Sequence derived from alignment at sc0000117:499092..499725 (Clytia hemisphaerica)
CGAAAGCAAACTTTTAATCACGTCCAGCCCATCGACACCAGGAACAATAA
ATTTGGGATTTACTTCTCCAGAAAGTACATGTTTATTCGGTATCATGCCT
TCACAAAATATTCCATAGTCTGCACCAAATCTTGcataaatttttgataa
aattttattggTGAGTTTTAATCTTCGATACTCTGGAATAACTATTCCAC
TCTCCAAATACAATACAGTATCTAATTTATGGTCCTCATACAAAGGTTTC
ATAAGATCGTGGCAAACGTCATATCGATGTCGGAAGTATTTGCGAACAGT
GTCCGGTAATGTGTTGTCCTCTGAAACCGATTTTTGACTATCGATAAAGA
CCTTTTGAAATGTTTGTTTAGGGACGAAATAATTCATAGTGCATGCAATA
ATTCGTCCGGATTCCTCTATTGCAATATACGAGGCATCCTGAAATTTCTG
ATTTTGAGTATACCCAGGGTCCAAACAGTCTTCAAAATCCATATACGTTG
ATCTTTCTGTCTCACTGATTCCCAAACGTTTGTAATAAGTTggtatcaaa
tatttttcaaccaaattgTGCACTTGATTTGAATGTTGTTGAATATTGTA
TCGAAGCACCTTTATTCGATGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006091XLOC_006091Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010850-proteinTCONS_00010850-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010850-exon-sc0000117-1491911889:499092..499725TCONS_00010850-exon-sc0000117-1491911889:499092..499725Clytia hemisphaericaexon
TCONS_00010850-exon-sc0000117-1510915933:499092..499725TCONS_00010850-exon-sc0000117-1510915933:499092..499725Clytia hemisphaericaexon
TCONS_00010850-exon-sc0000117-1575043694:499092..499725TCONS_00010850-exon-sc0000117-1575043694:499092..499725Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000117supercontigsc0000117:499092..499725 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.704946	0.51081	0.417324	0.786895	0.138119	0.282245	0	0.200949	0.140689	0	0	0.0555952	1.20855	0.61363	1.53628	1.99833	0.391189	0.504616	1.09031	1.10017	0.97372	0.666251	0.841285	0.91708	0.448128	0.647043	0	0.610793	3.38486	1.86609
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010850 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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