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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010846 ID=TCONS_00010846|Name=TCONS_00010846|organism=Clytia hemisphaerica|type=transcript|length=2081bp
cgcgATAAATATTCTACaacaattatttttagttttacatATATGTCTGT
ATAATGATTAACAATGAATAAATATAAATGAAGGAATAgtcaaacaaact
tttttttcttgaaagggGATTTGTTCATCTTTAACCAATTAGTTCCCTTT
ACagggtgtccgaaaaaaattatcgagtcgaaacacaattatgagtagaa
agttttttatgtgtgtattcacaaaattgattATGTAACACTTTTTCAGA
CTaacttttgtaataagcctgtacGATTGAGTATGTTCTCATATTtcagc
gataacacacacaaacttttctactcaatggTATGTTCAAACccgatact
ttttttcgggacaccctgtatagcgTTTTTATGatgaattcaattttcat
ttaataatttcaattcaaattctgagcaaaaaaaatagcaacaaaatttc
gttgcctctttcaaaatcatCAATGTAAAAAAGGAGACTCCACAGAGATC
GCAAATTAACCATCAAAACACGAGATTATAACAAAAATCTAACTTAAAAA
ATAGTCATTGCCCTGCTTCGACCATGTCCATTGCTCATCGAGGTggtcat
ttttccatttttgtgaatgaattttaaaaagtcAACCGCCCTTTCGTCCG
CCCATGAAGAAGGcgttaaatctttaaaaaatccaCAATGTCCTCCATAT
TCagtggtcagtaaaatacacCATTCCGAAATGCCGAAAAATTCGTATGG
TACTGAAATCTCAGGTATGACTGGATCATCCTTAGCGTGTAAAAACAGGA
CCGGAACTTGAATCCGATTCAAATGAATTAACGGACTGTTATAAttcaaa
tattctttcaaagtttgataCTGATTACTTCGTGCGTGGATTTCATTCTG
TAAGGAAACCATTGTTTGACAGTTTTGTACAGCCTCGCTATCAAACATAT
CATGACAAATTGCATTACTTTGAAAAATGGTTTTGATCTTCTCCGTTATA
ATCGCATTGTACGGTTGTCTCATAGCGTGATCATCAAGCTGATTCTCGCA
CCCGAATGTCGATGACACACAAACAGCACCTGCAATCAGGCTATCTGTTT
TCTCATGCCCTAAATAACTGATGAGATTCCCCGATTCCATTGAAAAAGCC
ATTGCGTAGATACTACTAAATGGGAACTGTGAATTCAGATATTGTAACGT
CTCTTCANGAGAAAGCCATTGCGTAGATACTACTAAACGGGAACTGTGAA
TTCAGATATTGTAGCGTCTCTTCTAGGTCGGAGTGGTCATTATAAGTCGT
TACCTTTGGGGTCGTTAAAACGTTCGAAGCGTAACCACGGCGATTAAAAA
ATAACGGCTTAAATCCGTTTTTAAGAGCGTATAAACATAGATCAGTATAG
TCTTGTACGTTTGTGTTTAAAGCACTTGGAATGATGAGTAGAATAGGTTT
CTCTTTGACcattaatgttttctttttgagCGAGCGGCGTTTTTTGGTTG
AAGCGGCGGCCGCTTCTGAGTCCACTTGACTGACCCATTCGAATGATATT
ATACCCTCGTCTTCCATTTGTAGGTATTCCTTAGTAACTGAAATTTTTGG
ACAATCATGAAAACTGACTATTGTTTTCAACCATGTCTGTAAATGCCCGC
TTGGTGCCCAGAAGGTTGGGATGTAAGGTGCATTGAAGGATTCACACGTG
TCTAAAAGCTTGTGATATAAGACTGATGAGTTTTTGAATGTGATTTCAGG
TGATTTGATGTAATAGTATGCACGAAATTCATTGATGATGTAGAGTACAG
CAGCAATAAAACTGGAGAGTAGGACCAGCTCAATCATCATGATATGTTGA
CCAGAGATGCAACTACCATCGATGTTGAATATGTCTTGGTTTGATGTgca
gtttttcttgtttttatatcTAAGTGAGAAAATATTGTAGAAAATATAAA
ACTGATTAGACTATGCAGCAGGGATCACATGATTACACAGTAAACCTATA
AAagcgcttgaaaattaaccgTTGGAGGAAAATTGTCAATTCCataacaa
aaaccttgtttcgcgccatcaaaaatttttt Run BLAST on NCBI protein sequence of TCONS_00010846-protein >TCONS_00010846-protein ID=TCONS_00010846-protein|Name=TCONS_00010846-protein|organism=Clytia hemisphaerica|type=polypeptide|length=211bp
MMIELVLLSSFIAAVLYIINEFRAYYYIKSPEITFKNSSVLYHKLLDTCE
SFNAPYIPTFWAPSGHLQTWLKTIVSFHDCPKISVTKEYLQMEDEGIISF
EWVSQVDSEAAAASTKKRRSLKKKTLMVKEKPILLIIPSALNTNVQDYTD
LCLYALKNGFKPLFFNRRGYASNVLTTPKVTTYNDHSDLEETLQYLNSQF
PFSSIYAMAFX Run BLAST on NCBI transcript from alignment at sc0000117:460508..462588 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010846 ID=TCONS_00010846|Name=TCONS_00010846|organism=Clytia hemisphaerica|type=transcript|length=2081bp|location=Sequence derived from alignment at sc0000117:460508..462588 (Clytia hemisphaerica)
aaaaaatttttgatggcgcgaaacaaggtttttgttatGGAATTGACAAT
TTTCCTCCAAcggttaattttcaagcgctTTTATAGGTTTACTGTGTAAT
CATGTGATCCCTGCTGCATAGTCTAATCAGTTTTATATTTTCTACAATAT
TTTCTCACTTAgatataaaaacaagaaaaactgcACATCAAACCAAGACA
TATTCAACATCGATGGTAGTTGCATCTCTGGTCAACATATCATGATGATT
GAGCTGGTCCTACTCTCCAGTTTTATTGCTGCTGTACTCTACATCATCAA
TGAATTTCGTGCATACTATTACATCAAATCACCTGAAATCACATTCAAAA
ACTCATCAGTCTTATATCACAAGCTTTTAGACACGTGTGAATCCTTCAAT
GCACCTTACATCCCAACCTTCTGGGCACCAAGCGGGCATTTACAGACATG
GTTGAAAACAATAGTCAGTTTTCATGATTGTCCAAAAATTTCAGTTACTA
AGGAATACCTACAAATGGAAGACGAGGGTATAATATCATTCGAATGGGTC
AGTCAAGTGGACTCAGAAGCGGCCGCCGCTTCAACCAAAAAACGCCGCTC
GctcaaaaagaaaacattaatgGTCAAAGAGAAACCTATTCTACTCATCA
TTCCAAGTGCTTTAAACACAAACGTACAAGACTATACTGATCTATGTTTA
TACGCTCTTAAAAACGGATTTAAGCCGTTATTTTTTAATCGCCGTGGTTA
CGCTTCGAACGTTTTAACGACCCCAAAGGTAACGACTTATAATGACCACT
CCGACCTAGAAGAGACGCTACAATATCTGAATTCACAGTTCCCGTTTAGT
AGTATCTACGCAATGGCTTTCTCNTGAAGAGACGTTACAATATCTGAATT
CACAGTTCCCATTTAGTAGTATCTACGCAATGGCTTTTTCAATGGAATCG
GGGAATCTCATCAGTTATTTAGGGCATGAGAAAACAGATAGCCTGATTGC
AGGTGCTGTTTGTGTGTCATCGACATTCGGGTGCGAGAATCAGCTTGATG
ATCACGCTATGAGACAACCGTACAATGCGATTATAACGGAGAAGATCAAA
ACCATTTTTCAAAGTAATGCAATTTGTCATGATATGTTTGATAGCGAGGC
TGTACAAAACTGTCAAACAATGGTTTCCTTACAGAATGAAATCCACGCAC
GAAGTAATCAGtatcaaactttgaaagaatatttgaaTTATAACAGTCCG
TTAATTCATTTGAATCGGATTCAAGTTCCGGTCCTGTTTTTACACGCTAA
GGATGATCCAGTCATACCTGAGATTTCAGTACCATACGAATTTTTCGGCA
TTTCGGAATGgtgtattttactgaccactGAATATGGAGGACATTGtgga
ttttttaaagatttaacgCCTTCTTCATGGGCGGACGAAAGGGCGGTTga
ctttttaaaattcattcacaaaaatggaaaaatgaccACCTCGATGAGCA
ATGGACATGGTCGAAGCAGGGCAATGACTATTTTTTAAGTTAGATTTTTG
TTATAATCTCGTGTTTTGATGGTTAATTTGCGATCTCTGTGGAGTCTCCT
TTTTTACATTGatgattttgaaagaggcaacgaaattttgttgctatttt
ttttgctcagaatttgaattgaaattattaaatgaaaattgaattcatCA
TAAAAAcgctatacagggtgtcccgaaaaaaagtatcggGTTTGAACATA
ccattgagtagaaaagtttgtgtgtgttatcgctgaAATATGAGAACATA
CTCAATCgtacaggcttattacaaaagttAGTCTGAAAAAGTGTTACATa
atcaattttgtgaatacacacataaaaaactttctactcataattgtgtt
tcgactcgataatttttttcggacaccctGTAAAGGGAACTAATTGGTTA
AAGATGAACAAATCccctttcaagaaaaaaaagtttgtttgacTATTCCT
TCATTTATATTTATTCATTGTTAATCATTATACAGACATATatgtaaaac
taaaaataattgttGTAGAATATTTATcgcg Coding sequence (CDS) from alignment at sc0000117:460508..462588 >TCONS_00010846 ID=TCONS_00010846|Name=TCONS_00010846|organism=Clytia hemisphaerica|type=CDS|length=636bp|location=Sequence derived from alignment at sc0000117:460508..462588 (Clytia hemisphaerica)
ATGATGATTGAGCTGGTCCTACTCTCCAGTTTTATTGCTGCTGTACTCTA
CATCATCAATGAATTTCGTGCATACTATTACATCAAATCACCTGAAATCA
CATTCAAAAACTCATCAGTCTTATATCACAAGCTTTTAGACACGTGTGAA
TCCTTCAATGCACCTTACATCCCAACCTTCTGGGCACCAAGCGGGCATTT
ACAGACATGGTTGAAAACAATAGTCAGTTTTCATGATTGTCCAAAAATTT
CAGTTACTAAGGAATACCTACAAATGGAAGACGAGGGTATAATATCATTC
GAATGGGTCAGTCAAGTGGACTCAGAAGCGGCCGCCGCTTCAACCAAAAA
ACGCCGCTCGctcaaaaagaaaacattaatgGTCAAAGAGAAACCTATTC
TACTCATCATTCCAAGTGCTTTAAACACAAACGTACAAGACTATACTGAT
CTATGTTTATACGCTCTTAAAAACGGATTTAAGCCGTTATTTTTTAATCG
CCGTGGTTACGCTTCGAACGTTTTAACGACCCCAAAGGTAACGACTTATA
ATGACCACTCCGACCTAGAAGAGACGCTACAATATCTGAATTCACAGTTC
CCGTTTAGTAGTATCTACGCAATGGCTTTCTCNTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010846-exon-sc0000117-1491911889:460508..462588 | TCONS_00010846-exon-sc0000117-1491911889:460508..462588 | Clytia hemisphaerica | exon |
| TCONS_00010846-exon-sc0000117-1510915933:460508..462588 | TCONS_00010846-exon-sc0000117-1510915933:460508..462588 | Clytia hemisphaerica | exon |
| TCONS_00010846-exon-sc0000117-1575043694:460508..462588 | TCONS_00010846-exon-sc0000117-1575043694:460508..462588 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000117 | supercontig | sc0000117:460508..462588 . |
Blast
The following BLAST results are available for this feature:
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