TCONS_00010844 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010844
Unique NameTCONS_00010844
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length297

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010844 ID=TCONS_00010844|Name=TCONS_00010844|organism=Clytia hemisphaerica|type=transcript|length=297bp
ACTATGAACGAGGCTCATTGTGCAGTTGACCAGAACCAAACGGCTAAAGA
TGAAGAAATCATAAAACTAAAGCAAGAACATACAAAGGAAATCGAAACAT
TGACTCTGGAtcataaaatcaaaatgattgaacttcaaaatgacttaaaa
ttaaaagaaatgGAGAAGACATTtgatttggaaaaagaaaatcaatctcT
TAAACACGAGATTGAAATCATGAAGATAAGAGCAAAACATCAACAAACAG
AAGCCGAACAGAAATTAAAAGAGGAAAACCAGACCTTAAGACACAAA
Run BLAST on NCBI

protein sequence of TCONS_00010844-protein

>TCONS_00010844-protein ID=TCONS_00010844-protein|Name=TCONS_00010844-protein|organism=Clytia hemisphaerica|type=polypeptide|length=99bp
TMNEAHCAVDQNQTAKDEEIIKLKQEHTKEIETLTLDHKIKMIELQNDLK
LKEMEKTFDLEKENQSLKHEIEIMKIRAKHQQTEAEQKLKEENQTLRHK
Run BLAST on NCBI

transcript from alignment at sc0000117:283069..283365

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010844 ID=TCONS_00010844|Name=TCONS_00010844|organism=Clytia hemisphaerica|type=transcript|length=297bp|location=Sequence derived from alignment at sc0000117:283069..283365 (Clytia hemisphaerica)
TTTGTGTCTTAAGGTCTGGTTTTCCTCTTTTAATTTCTGTTCGGCTTCTG
TTTGTTGATGTTTTGCTCTTATCTTCATGATTTCAATCTCGTGTTTAAga
gattgattttctttttccaaatcaAATGTCTTCTCcatttcttttaattt
taagtcattttgaagttcaatcattttgattttatgaTCCAGAGTCAATG
TTTCGATTTCCTTTGTATGTTCTTGCTTTAGTTTTATGATTTCTTCATCT
TTAGCCGTTTGGTTCTGGTCAACTGCACAATGAGCCTCGTTCATAGT

Coding sequence (CDS) from alignment at sc0000117:283069..283365

>TCONS_00010844 ID=TCONS_00010844|Name=TCONS_00010844|organism=Clytia hemisphaerica|type=CDS|length=297bp|location=Sequence derived from alignment at sc0000117:283069..283365 (Clytia hemisphaerica)
TTTGTGTCTTAAGGTCTGGTTTTCCTCTTTTAATTTCTGTTCGGCTTCTG
TTTGTTGATGTTTTGCTCTTATCTTCATGATTTCAATCTCGTGTTTAAga
gattgattttctttttccaaatcaAATGTCTTCTCcatttcttttaattt
taagtcattttgaagttcaatcattttgattttatgaTCCAGAGTCAATG
TTTCGATTTCCTTTGTATGTTCTTGCTTTAGTTTTATGATTTCTTCATCT
TTAGCCGTTTGGTTCTGGTCAACTGCACAATGAGCCTCGTTCATAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006085XLOC_006085Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010844-exon-sc0000117-1491911889:283069..283365TCONS_00010844-exon-sc0000117-1491911889:283069..283365Clytia hemisphaericaexon
TCONS_00010844-exon-sc0000117-1510915933:283069..283365TCONS_00010844-exon-sc0000117-1510915933:283069..283365Clytia hemisphaericaexon
TCONS_00010844-exon-sc0000117-1575043694:283069..283365TCONS_00010844-exon-sc0000117-1575043694:283069..283365Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010844-proteinTCONS_00010844-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000117supercontigsc0000117:283069..283365 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.911184	0	0	0	0	0	0.678151	0.839999	0	0.803943	3.47891	3.61288	6.16904	7.84631	3.92682	1.23842	12.8321	1.79038	1.94521	2.84641	0.922715	2.09721	3.88813	4.24119	0	0.588831	0	0.455022
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010844 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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