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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010843 ID=TCONS_00010843|Name=TCONS_00010843|organism=Clytia hemisphaerica|type=transcript|length=1939bp
GGATAAAGAAGTCCATTCCTATTGAAGATGATGTTTCAGTAGTAATATTC
AATTTATTAGCTGGTTATCTCTTTGCTATGAAACTGTTGACAGATAGACT
ACCATACTGCATTTACTTGATAATGAGGTATGAGGTCTCAGTAACCGCTA
TCTAGAAGTGTTTTATAGTATTACCACTATTTAACGATAACACTGTAACA
ATTAGACGCGATTTCAGAGAAGTCCTTCAGATTTCGACAATTTCATCAAT
TCATTACACAGTGCAGTGGTACTTATCAGGAATAAGGCCCCACTATAACT
AATCGATTTGCAGATTTATAGGCGAGAGACCCATGATTGGGCGCAAACGA
AGCTGGGCTAGAGTGTACTAGGATCAGGTCGCGTCAAGTATCAGATTCTG
AAAGCACACTGATGCAATTTGTTCAGTCACTGTACCAGCTGTACCAttta
atagcgagtttatgtatttgcacttttgaggacggtagagtaactgaagc
gatttggaaaaaacctgcaTTTCTGATCCGCATTATCGAGGaaggtaaaa
gtgctgatttaccgtcgtcctcagttggtcaggatcttgtcaaattagaa
ccttaccgtctccgtcgttgaaaaacacacatacataaactcggtaatat
ccATGCAGGGGCAGGACAAACCTTTTCTCTAAATTGTGCGGGGTTTTTTT
AGTAATGTTACAAAATTTCCAACAAATTCCTGGAAAAAAGGAATCTATTT
CCCTTGGGAAAATACTAttttatgctaaatttaaggtGGACTAACTCCTT
GGAATGTAAACGAGCTTATAGTTTCatccctggaaaaaaaaaaataggtt
AAGCGATGCTTTGTCGTTAAACTTTTTGGAATTTCTTCTTTGTGGACCCC
AAGGAAATGTTCGGCCACCCCTATGTATGGATGTAAAACGAAATGGCCCA
TTTGACCCTAGTGTAGTATACTCAAAACCAATCTCCTCATGTCTGGAGAT
TTGGATCATATTGAAAAAGATATTATTACCATTTATTATATGAGACTTTA
TTATGTTATATATATAGAAATAATTATATGGAGAATTTATGGAATTAAAC
TTCTTTTCGTTTTGTTTCGATTGTTGTAAATAGTTTTCGTAGGAATAATC
TTTATCTACAATGGGCTTTTCGAGAAAATAAATGAAtatgggggggtgga
ggatataatattttttagaaatttattctCCGGACATTGTGGATTTTTat
ccccccccccggacagcaggtcgaacccccggacaaggcagcAAGTTTAC
CCCTCCTCGGACTATTTCCTCCGCCCCCTCATGTACgtacattttctgga
agagcccaattttaGCTTTTCTATAATCACGCTATGGAATTACAGACCGG
GTGGAACTATTACTTCACTGAAAGATCTTGAAAAACTCTCCTGGATTGAG
CTTTTCTAGTAATAAGACCCATTCATTGGGTTTTTAAGGGGTACCGTGAT
TCCGTCATTCCATCATTCCGCCAATAGCTTATTGTTCCGTCGATAGGTTC
CGTCTCAGACAGTGGACTTAATTTTTAGACCTAAATTCTATATTTCTGCG
AATTCCCTCATTCCCGACGAAAAAAATAGCCCCTTTCCGTTAGTTTATTT
AGGACTTCCGCGGAGTTTTCTTTCCATtgatcatttttttataataggGA
AGAATGGTAATGTGTTGGCCTTACCCTATACTTCTGTCCATGTACGTAGC
AATtttattgcatattttagtTTAGATTTAATTTAGTAAATAGATCTATA
AATCGAGTTTTTTCTAATTCTATcttaattttaaatcaatttattgatct
tttttttatttcagtgaaaatttatTCCCAATACTCAatataatattata
ttataaaattacatttcttctgACTCTTTTCCTAGTTCG Run BLAST on NCBI transcript from alignment at sc0000117:253350..255288 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010843 ID=TCONS_00010843|Name=TCONS_00010843|organism=Clytia hemisphaerica|type=transcript|length=1939bp|location=Sequence derived from alignment at sc0000117:253350..255288 (Clytia hemisphaerica)
CGAACTAGGAAAAGAGTcagaagaaatgtaattttataatataatattat
atTGAGTATTGGGAataaattttcactgaaataaaaaaaagatcaataaa
ttgatttaaaattaagATAGAATTAGAAAAAACTCGATTTATAGATCTAT
TTACTAAATTAAATCTAAactaaaatatgcaataaaATTGCTACGTACAT
GGACAGAAGTATAGGGTAAGGCCAACACATTACCATTCTTCcctattata
aaaaaatgatcaATGGAAAGAAAACTCCGCGGAAGTCCTAAATAAACTAA
CGGAAAGGGGCTATTTTTTTCGTCGGGAATGAGGGAATTCGCAGAAATAT
AGAATTTAGGTCTAAAAATTAAGTCCACTGTCTGAGACGGAACCTATCGA
CGGAACAATAAGCTATTGGCGGAATGATGGAATGACGGAATCACGGTACC
CCTTAAAAACCCAATGAATGGGTCTTATTACTAGAAAAGCTCAATCCAGG
AGAGTTTTTCAAGATCTTTCAGTGAAGTAATAGTTCCACCCGGTCTGTAA
TTCCATAGCGTGATTATAGAAAAGCtaaaattgggctcttccagaaaatg
tacGTACATGAGGGGGCGGAGGAAATAGTCCGAGGAGGGGTAAACTTgct
gccttgtccgggggttcgacctgctgtccggggggggggatAAAAATCCA
CAATGTCCGGagaataaatttctaaaaaatattatatcctccaccccccc
ataTTCATTTATTTTCTCGAAAAGCCCATTGTAGATAAAGATTATTCCTA
CGAAAACTATTTACAACAATCGAAACAAAACGAAAAGAAGTTTAATTCCA
TAAATTCTCCATATAATTATTTCTATATATATAACATAATAAAGTCTCAT
ATAATAAATGGTAATAATATCTTTTTCAATATGATCCAAATCTCCAGACA
TGAGGAGATTGGTTTTGAGTATACTACACTAGGGTCAAATGGGCCATTTC
GTTTTACATCCATACATAGGGGTGGCCGAACATTTCCTTGGGGTCCACAA
AGAAGAAATTCCAAAAAGTTTAACGACAAAGCATCGCTTaacctattttt
ttttttccagggatGAAACTATAAGCTCGTTTACATTCCAAGGAGTTAGT
CCaccttaaatttagcataaaaTAGTATTTTCCCAAGGGAAATAGATTCC
TTTTTTCCAGGAATTTGTTGGAAATTTTGTAACATTACTAAAAAAACCCC
GCACAATTTAGAGAAAAGGTTTGTCCTGCCCCTGCATggatattaccgag
tttatgtatgtgtgtttttcaacgacggagacggtaaggttctaatttga
caagatcctgaccaactgaggacgacggtaaatcagcacttttaccttCC
TCGATAATGCGGATCAGAAAtgcaggttttttccaaatcgcttcagttac
tctaccgtcctcaaaagtgcaaatacataaactcgctattaaaTGGTACA
GCTGGTACAGTGACTGAACAAATTGCATCAGTGTGCTTTCAGAATCTGAT
ACTTGACGCGACCTGATCCTAGTACACTCTAGCCCAGCTTCGTTTGCGCC
CAATCATGGGTCTCTCGCCTATAAATCTGCAAATCGATTAGTTATAGTGG
GGCCTTATTCCTGATAAGTACCACTGCACTGTGTAATGAATTGATGAAAT
TGTCGAAATCTGAAGGACTTCTCTGAAATCGCGTCTAATTGTTACAGTGT
TATCGTTAAATAGTGGTAATACTATAAAACACTTCTAGATAGCGGTTACT
GAGACCTCATACCTCATTATCAAGTAAATGCAGTATGGTAGTCTATCTGT
CAACAGTTTCATAGCAAAGAGATAACCAGCTAATAAATTGAATATTACTA
CTGAAACATCATCTTCAATAGGAATGGACTTCTTTATCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010843-exon-sc0000117-1491911889:253350..255288 | TCONS_00010843-exon-sc0000117-1491911889:253350..255288 | Clytia hemisphaerica | exon |
| TCONS_00010843-exon-sc0000117-1510915933:253350..255288 | TCONS_00010843-exon-sc0000117-1510915933:253350..255288 | Clytia hemisphaerica | exon |
| TCONS_00010843-exon-sc0000117-1575043694:253350..255288 | TCONS_00010843-exon-sc0000117-1575043694:253350..255288 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000117 | supercontig | sc0000117:253350..255288 . |
Blast
The following BLAST results are available for this feature:
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