TCONS_00010842 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010842
Unique NameTCONS_00010842
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length511

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010842 ID=TCONS_00010842|Name=TCONS_00010842|organism=Clytia hemisphaerica|type=transcript|length=511bp
GCAAGGGAGTTCTTAATTCTGAATAGTGCTTAGTCTGAAAACCCAAAACT
GATGTTATTAAAATTTAAGTTGAGCAGTGTTTAAAATTCATTTGACATTC
ATGTTATATTATACATGATTAGTAAAATTAtattaaacaaatttttataa
cattttataGAGTTGGTTATTTTTTCTATAGCTGGTAATGTTATTTTTCA
TAGTTTACATACATCAaatttcttgaatatttttttggttGAATTATTAA
TTTTATGAGAtaggaaattattttttaaataatataacAGATAGGTTTAT
GCGCGAGAGGCTTACTCCCCTCTACTATTGCGCGACTTGATTGGCTTTTT
TCCGGAGTAATCGTCagttttttgttcaattttccattgcaaaggatgat
ttctcttttattttcacGACATATTACATATTCTGttatattttcacaat
ttttatattaatttgaattttcaacaaaaatctaAGTACAGTTATTTAAC
ttatcaatatt
Run BLAST on NCBI

transcript from alignment at sc0000117:250366..250876

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010842 ID=TCONS_00010842|Name=TCONS_00010842|organism=Clytia hemisphaerica|type=transcript|length=511bp|location=Sequence derived from alignment at sc0000117:250366..250876 (Clytia hemisphaerica)
aatattgataaGTTAAATAACTGTACTtagatttttgttgaaaattcaaa
ttaatataaaaattgtgaaaatataaCAGAATATGTAATATGTCgtgaaa
ataaaagagaaatcatcctttgcaatggaaaattgaacaaaaaactGACG
ATTACTCCGGAAAAAAGCCAATCAAGTCGCGCAATAGTAGAGGGGAGTAA
GCCTCTCGCGCATAAACCTATCTgttatattatttaaaaaataatttcct
aTCTCATAAAATTAATAATTCaaccaaaaaaatattcaagaaattTGATG
TATGTAAACTATGAAAAATAACATTACCAGCTATAGAAAAAATAACCAAC
TCtataaaatgttataaaaatttgtttaataTAATTTTACTAATCATGTA
TAATATAACATGAATGTCAAATGAATTTTAAACACTGCTCAACTTAAATT
TTAATAACATCAGTTTTGGGTTTTCAGACTAAGCACTATTCAGAATTAAG
AACTCCCTTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006083XLOC_006083Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010842-exon-sc0000117-1491911889:250366..250876TCONS_00010842-exon-sc0000117-1491911889:250366..250876Clytia hemisphaericaexon
TCONS_00010842-exon-sc0000117-1510915933:250366..250876TCONS_00010842-exon-sc0000117-1510915933:250366..250876Clytia hemisphaericaexon
TCONS_00010842-exon-sc0000117-1575043694:250366..250876TCONS_00010842-exon-sc0000117-1575043694:250366..250876Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000117supercontigsc0000117:250366..250876 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.234952	0	0.133012	0.260264	0.633692	0.62594	0.906203	0.706981	0.395979	0.367863	0.119019	0.0782383	0.625037	0.243415	0.933894	1.21697	0.176378	0.813516	0.874157	0.392032	0.45433	0	0.538783	0.489832	0.378386	0.562834	0.322166	0.343824	0.651946	0.797076
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010842 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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