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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010840 ID=TCONS_00010840|Name=TCONS_00010840|organism=Clytia hemisphaerica|type=transcript|length=1757bp
taatttttcaacttttaaagactttttcttccagttttttaaattactaa
tttttttaataaaactatgtaacaaaataaaacaagttTATTCGCTAGTT
TCGGACTGTCCTTTATGGAGAAAATTTGACCAGCATTTTCTTAGTATTTC
TTAGTGCAAGAATTAACACAGGCGAAGAATAACTCGAACTTAATCGACCG
AATAATTCggttaatttcgcgaattttactGGATCGAGTATTTTCGAGTT
GAAAAAAATCGTTTGGAAAGTTCGAGTAAAACAGTctggtattcatgata
ttcatgacgtaatgttttctacggaaagaccccggtttttgccagtagtg
acaaattttatacaacttttttcaagtttaaatttgccactactggctac
aaCCGatgtatttccgtagaaaacattacatcatgaatatcataaatACG
AGTTATTCAATGGTAAAATAATGACGTTAAatgataatcagatggtttcg
GTATATATTCGGTATGTCATTTTttcgttcattcattcattcattcattc
attcattcatccttCGATCTAGGTCTTTGAAGACCTAGGTCGGAAAGATA
TTTGGTATGTAGATACCTTCTTCTATCCTGAGGAAAAGCTGTTTTTacct
aactattttccaaagtggaATATTCAAGTCTTTACTATTAGCAAGAAAAA
ATATAGTTTTAACGTAAGAACtgtgtaagaacccatttttggaaatttca
agtcaaatttcattatctttagaatttagaaaaaagttcgagacaaaaat
acttgGAGGTTTTACCAATGCagaatatctcaaaccatctgattatccct
ttaataaTGGTCACATCATTAGATAGCTAggtgtttttcaaatttttgta
attCGCTTATTCTTGCACTAATTTCGTGTTAACGAGGAAAAGATCCCTCa
acaatttttacaatatttgATATGATAATATTATTTACACTAAAATGGAa
tgaagtttcaaaaaaaataaagaaagaaattaaaactaaatttaaaagtt
taaagaagACAACTGCAAAATATGGTTTGATTTGACTTCACCTAGTTTTT
GCTTGGTTCTTTTTGtgtaaagaaaaaacaaatagaaactCAACAGAATC
TACGAAACAAGACCTATTAAGTAAAAACTGCAATATTTAACAGCATATAC
ATCTACCAACCCTAAACGGCTTTTAAGGGGTCTGATAATGAATCTACAAC
GAAATGACGTCAAAGTTCTTTAcgcccccttctcatagacccactAGGAC
CCTTCCCactaaaaattggccaaaatagcgtccccagtggaaaactatac
tctaatttttgtccccagtgaaaataatcagataagaaAATCCTCagtac
aaaatattttttctatccCCAGTGTAAAATCTTGCTCGAAAACAATACAA
TTCAAAACCCAGCCTTAAAAAaataggaatatcaatcccaatcGATTTTT
GGTCCGTCGTTTTTACTCTCACTGGTTGAAAAAATCCCActtggtctgtg
agaagggaacGTTTCTTTGTTTCATGAGAATATTAATGCAACAACTTCGA
ACATTTTAACCTCATTCTTCCtggtaaactcgaacccagtccccaGCTGA
CATTCAACGTTGttataacgttcatctaacgttatatggaggttgtgaac
attagataaacgttgaaaaaacgtatTGTGCTAGCTGGGTCTCCTCGCGC
TTTAAAG Run BLAST on NCBI transcript from alignment at sc0000117:147338..149094 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010840 ID=TCONS_00010840|Name=TCONS_00010840|organism=Clytia hemisphaerica|type=transcript|length=1757bp|location=Sequence derived from alignment at sc0000117:147338..149094 (Clytia hemisphaerica)
CTTTAAAGCGCGAGGAGACCCAGCTAGCACAatacgttttttcaacgttt
atctaatgttcacaacctccatataacgttagatgaacgttataaCAACG
TTGAATGTCAGCtggggactgggttcgagtttaccaGGAAGAATGAGGTT
AAAATGTTCGAAGTTGTTGCATTAATATTCTCATGAAACAAAGAAACgtt
cccttctcacagaccaagTGGGATTTTTTCAACCAGTGAGAGTAAAAACG
ACGGACCAAAAATCgattgggattgatattcctattTTTTTAAGGCTGGG
TTTTGAATTGTATTGTTTTCGAGCAAGATTTTACACTGGggatagaaaaa
atattttgtactGAGGATTttcttatctgattattttcactggggacaaa
aattagagtatagttttccactggggacgctattttggccaatttttagt
GGGAAGGGTCCTagtgggtctatgagaagggggcgTAAAGAACTTTGACG
TCATTTCGTTGTAGATTCATTATCAGACCCCTTAAAAGCCGTTTAGGGTT
GGTAGATGTATATGCTGTTAAATATTGCAGTTTTTACTTAATAGGTCTTG
TTTCGTAGATTCTGTTGagtttctatttgttttttctttacaCAAAAAGA
ACCAAGCAAAAACTAGGTGAAGTCAAATCAAACCATATTTTGCAGTTGTc
ttctttaaacttttaaatttagttttaatttctttctttattttttttga
aacttcatTCCATTTTAGTGTAAATAATATTATCATATcaaatattgtaa
aaattgttGAGGGATCTTTTCCTCGTTAACACGAAATTAGTGCAAGAATA
AGCGaattacaaaaatttgaaaaacaccTAGCTATCTAATGATGTGACCA
ttattaaagggataatcagatggtttgagatattctGCATTGGTAAAACC
TCcaagtatttttgtctcgaacttttttctaaattctaaagataatgaaa
tttgacttgaaatttccaaaaatgggttcttacacaGTTCTTACGTTAAA
ACTATATTTTTTCTTGCTAATAGTAAAGACTTGAATATtccactttggaa
aatagttaggtAAAAACAGCTTTTCCTCAGGATAGAAGAAGGTATCTACA
TACCAAATATCTTTCCGACCTAGGTCTTCAAAGACCTAGATCGaaggatg
aatgaatgaatgaatgaatgaatgaatgaacgaaAAAATGACATACCGAA
TATATACcgaaaccatctgattatcatTTAACGTCATTATTTTACCATTG
AATAACTCGTatttatgatattcatgatgtaatgttttctacggaaatac
atCGGttgtagccagtagtggcaaatttaaacttgaaaaaagttgtataa
aatttgtcactactggcaaaaaccggggtctttccgtagaaaacattacg
tcatgaatatcatgaataccagACTGTTTTACTCGAACTTTCCAAACGAT
TTTTTTCAACTCGAAAATACTCGATCCagtaaaattcgcgaaattaaccG
AATTATTCGGTCGATTAAGTTCGAGTTATTCTTCGCCTGTGTTAATTCTT
GCACTAAGAAATACTAAGAAAATGCTGGTCAAATTTTCTCCATAAAGGAC
AGTCCGAAACTAGCGAATAaacttgttttattttgttacatagttttatt
aaaaaaattagtaatttaaaaaactggaagaaaaagtctttaaaagttga
aaaatta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010840-exon-sc0000117-1491911889:147338..149094 | TCONS_00010840-exon-sc0000117-1491911889:147338..149094 | Clytia hemisphaerica | exon |
| TCONS_00010840-exon-sc0000117-1510915933:147338..149094 | TCONS_00010840-exon-sc0000117-1510915933:147338..149094 | Clytia hemisphaerica | exon |
| TCONS_00010840-exon-sc0000117-1575043694:147338..149094 | TCONS_00010840-exon-sc0000117-1575043694:147338..149094 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000117 | supercontig | sc0000117:147338..149094 . |
Blast
The following BLAST results are available for this feature:
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