TCONS_00010835 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010835
Unique NameTCONS_00010835
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1033

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010835 ID=TCONS_00010835|Name=TCONS_00010835|organism=Clytia hemisphaerica|type=transcript|length=1033bp
tttagattttccTTTGAGGTTCAATGGAATTAATTGACAACACataaaaa
gggtaaaaaatcaaatcaacatTGCGACAAATAAAGTCAGTTTGAGAACT
CTACTCGACGCTAGGAGATTGAAACGATGAATATTCTCGTAGTTGCAact
ttttgtgtattttttgTGATCACCCAATCGAAGACAATCGACCATTACAA
AAATGACCTCTTTCAGAACCCGACAGATGACAACGACGATCTTTATCAAG
ATGTCGATTTTGTTGTTAATTCAGTGGCCGATGATGAGGAcgaaattttt
gaagaattaGAGGATCTGGACAGCCAAGGTGTTGGACACCTGGTTTATAA
TGGAGATGAAAATATGGCTCCGACGAAACGCATTTCGACGTCGACTACTT
CGACTGAGACGATTCCAACTACGCAAACTACTACCGAGATTACCCCAAAA
GCCGAAATTATTCCGACAACTGCTACCGAAATTCTTGTGACAACTTCTGA
CGAACCTAAAGCATCCACCGAAAATATTCCCGAAACAATTGAACCCGATC
AAACAAGTGAGAATATTCAATCAAGCTCAACCGATGAAATCCCTGTAACA
ACTTCAGAAAACATTCAATCGACTGACAATGCTGAGACAACCAAAGGTAT
AGTTACCATGACAACTGACATCTCCACTGAAGAACTGCGCATGACAGAAG
AAATTCTCACAACAAAGCCAACTCGCGAAACAACAACCcatggaaaaatc
agaaaaccaaAACTCTCTGCTATCATTCGAATATTGTTGGTTAAGATGAA
AGCGATGGAGAGAAAACAACGTACATTGGGTGCCATTGTCATGAAGCTCA
ACACCAGACTCGTTCGATTGgtgttgaaaacaaaaatgaagaaaatctcG
CTTTAGAATATTCCTTGTAGTAATTTTTGTAGCTTtgttaaattaaaatt
tttcttggttTTTTATTCAATACATATTTTCGATCACAGTTAACGTTACT
ATATCGTACAATACTTTATTATCAAATTTGTCC
Run BLAST on NCBI

protein sequence of TCONS_00010835-protein

>TCONS_00010835-protein ID=TCONS_00010835-protein|Name=TCONS_00010835-protein|organism=Clytia hemisphaerica|type=polypeptide|length=259bp
MNILVVATFCVFFVITQSKTIDHYKNDLFQNPTDDNDDLYQDVDFVVNSV
ADDEDEIFEELEDLDSQGVGHLVYNGDENMAPTKRISTSTTSTETIPTTQ
TTTEITPKAEIIPTTATEILVTTSDEPKASTENIPETIEPDQTSENIQSS
STDEIPVTTSENIQSTDNAETTKGIVTMTTDISTEELRMTEEILTTKPTR
ETTTHGKIRKPKLSAIIRILLVKMKAMERKQRTLGAIVMKLNTRLVRLVL
KTKMKKISL
Run BLAST on NCBI

transcript from alignment at sc0000117:518556..521819-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010835 ID=TCONS_00010835|Name=TCONS_00010835|organism=Clytia hemisphaerica|type=transcript|length=3264bp|location=Sequence derived from alignment at sc0000117:518556..521819- (Clytia hemisphaerica)
TTTAGATTTTCCTTTGAGGTTCAATGGAATTAATTGACAACACATAAAAA
GGGTAAAAAATCAAATCAACATTGCGACAAATAAAGTCAGTTTGAGAACT
CTACTCGACGCTAGGAGATTGAAACGATGAATATTCTCGTAGTTGCAACT
TTTTGTGTATTTTTTGGTAAGTGAAAACCTTATGAGTTCAAATGTTTTTC
ACATGATTGTTTAATTTTCAGAATATAAAACTTAGGTTCTTATGTCAAAT
TAGAGAAACTCCTTTTTGCTATTCCTATGAAGAAGAGTCTGGTATACCTC
AGTTTTATGTGCTTTATATGGAATTTTAACAGTTTTCATTGTCGGATAAT
ATTTTGAAAACGCCTCTAATTATGCTAGATTTGTTCCAGACTTTCGTTAA
AAAGCTTTTATATTTACTTAGCCTACCTTTCGCATTATAGTGATCACCCA
ATCGAAGACAATCGACCATTACAAAAATGACCTCTTTCAGAACCCGACAG
ATGACAACGACGATCTTTATCAAGATGTCGATTTTGTTGTTAATTCAGTG
GCCGATGATGAGGACGAAATTTTTGAAGAATTAGAGGATCTGGACAGCCA
AGGTGTTGGACACCTGGTTTATAATGGAGATGAAAATATGGCTCCGACGA
AACGCATTTCGACGTCGACTACTTCGACTGAGACGATTCCAACTACGCAA
ACTACTACCGAGATTACCCCAAAAGCCGAAATTATTCCGACAACTGCTAC
CGAAATTCTTGTGACAACTTCTGACGAACCTAAAGCATCCACCGAAAATA
TTCCCGAAACAATTGAACCCGATCAAACAAGTGAGAATATTCAATCAAGC
TCAACCGATGAAATCCCTGTAACAACTTCAGAAAACATTCAATCGACTGA
CAATGCTGAGACAACCAAAGGTATAGTTACCATGACAACTGACATCTCCA
CTGAAGAACTGCGCATGACAGAAGAAATTCTCACAACAAAGCCAACTCGC
GAAACAACAACCCATGGAAAAATCAGAAAACCAAAACTCTCTGCTATCAT
TCGAAGTGAGTTATTGTTACACTGCAAAAAATCATTTCTTAAAGAAAGTC
ACACATCTTATAGCAAGAAAGTTAAACTCCTAATAAGGAATTAAGTCTTA
ATACAAGAAAACGCCATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAGT
AATATTTTCCTTTTTCTTATAAATAGTAGCGTATTCTATTACCGATAATT
TATGTGAACTTTTTCTTGATTTAAGAAAATTAAAGAAGATATTTTCTCAT
CACAAGAAAATATTTATTTATAAAGTTAAGTAAAAAATACTTGACATAAG
AAAAATTTTCTTAATGGTATAAGAAAAATTATCTTAAAAGAATTTTAAGA
AAATTTTTCTTACCTATCGGAATAGAAAATATTTCTCATCTTAAGTAAGT
TTTTACTTAACTCGTTATTTTTTTTCTTCTAACAAGAAATGATTTTTTGC
AGTGTAATATGAAATCCTTTAAAATATCGAGAGTTCCTTTAATCGAGCAA
GCTTTTGCAAGATTTAATTTCGTGAGCCGAAAAATTTTGGTTCATTTTCA
CAGTCATTATTTTGAACAATTTTGCGTGGATTTAAATTTGCGAGTTGGCG
CTCTCACGTTATTTCGCGAGTTTTTTTTCGCAAAAATTGGCAAAAATTCG
AGAAATTAAATCTTACGAAACGTACACCGGTCGAAGTATCTTCTTTTTTT
GATGATTTAAGTTTATTTACCTAACTTTGTTGGGTAGGCAAAAATAACTA
CTGTAATCGGTATTCAGGAATGCGAATGGAAATTTTGGTTGAATGTCTTA
GAGGATACACATTTTCTATAAGCTACTCCAATTTCTGGTTAGGGCTGGAA
TTGCAAAGCATTTAGCTCATTTTTGAAAAAATTTACTTTGACCGTGCCTG
ATATTACACCATATATGTGCTTATCGGGACATGGTTTATATCGTTCGAAA
TATTTAAATTTTACTTTACGAAACGGTGAAAAATTTGGCTAATTCTAATG
CTCGAGCCTTAGCAACCTGGTTGCCTATATAAAAAAATGTGCAGAGGATA
TCAACATATGGATAAACTAGCGTTTCAGCTAGAGACTTAATCTGTGTAAA
TTTTCTTCTTAGTATTGTTGGTTAAGATGAAAGCGATGGAGAGAAAACAA
CGTACATTGGGTGCCATTGTCATGAAGCTCAACACCAGACTCGTTCGATT
GGTGTTGAAAACAAAAATGAAGAAAATCTCGCTTTAGAATATTCCTTGTA
GTAATTTTTGTAGCTTTGTTAAATTAAAATTTTTCTTGGTTTTTTATTCA
ATACATATTTTCGATCACAGTTAACGTTACTATATCGTACAATACTTTAT
TATCAAATTTGTCC

Coding sequence (CDS) from alignment at sc0000117:518556..521819-

>TCONS_00010835 ID=TCONS_00010835|Name=TCONS_00010835|organism=Clytia hemisphaerica|type=CDS|length=2340bp|location=Sequence derived from alignment at sc0000117:518556..521819- (Clytia hemisphaerica)
TATTGTTGGTTAAGATGAAAGCGATGGAGAGAAAACAACGTACATTGGGT
GCCATTGTCATGAAGCTCAACACCAGACTCGTTCGATTGGTGTTGAAAAC
AAAAATGAAGAAAATCTCGCTTTAGTGATCACCCAATCGAAGACAATCGA
CCATTACAAAAATGACCTCTTTCAGAACCCGACAGATGACAACGACGATC
TTTATCAAGATGTCGATTTTGTTGTTAATTCAGTGGCCGATGATGAGGAC
GAAATTTTTGAAGAATTAGAGGATCTGGACAGCCAAGGTGTTGGACACCT
GGTTTATAATGGAGATGAAAATATGGCTCCGACGAAACGCATTTCGACGT
CGACTACTTCGACTGAGACGATTCCAACTACGCAAACTACTACCGAGATT
ACCCCAAAAGCCGAAATTATTCCGACAACTGCTACCGAAATTCTTGTGAC
AACTTCTGACGAACCTAAAGCATCCACCGAAAATATTCCCGAAACAATTG
AACCCGATCAAACAAGTGAGAATATTCAATCAAGCTCAACCGATGAAATC
CCTGTAACAACTTCAGAAAACATTCAATCGACTGACAATGCTGAGACAAC
CAAAGGTATAGTTACCATGACAACTGACATCTCCACTGAAGAACTGCGCA
TGACAGAAGAAATTCTCACAACAAAGCCAACTCGCGAAACAACAACCCAT
GGAAAAATCAGAAAACCAAAACTCTCTGCTATCATTCGAAATGAATATTC
TCGTAGTTGCAACTTTTTGTGTATTTTTTGTATTGTTGGTTAAGATGAAA
GCGATGGAGAGAAAACAACGTACATTGGGTGCCATTGTCATGAAGCTCAA
CACCAGACTCGTTCGATTGGTGTTGAAAACAAAAATGAAGAAAATCTCGC
TTTAGTGATCACCCAATCGAAGACAATCGACCATTACAAAAATGACCTCT
TTCAGAACCCGACAGATGACAACGACGATCTTTATCAAGATGTCGATTTT
GTTGTTAATTCAGTGGCCGATGATGAGGACGAAATTTTTGAAGAATTAGA
GGATCTGGACAGCCAAGGTGTTGGACACCTGGTTTATAATGGAGATGAAA
ATATGGCTCCGACGAAACGCATTTCGACGTCGACTACTTCGACTGAGACG
ATTCCAACTACGCAAACTACTACCGAGATTACCCCAAAAGCCGAAATTAT
TCCGACAACTGCTACCGAAATTCTTGTGACAACTTCTGACGAACCTAAAG
CATCCACCGAAAATATTCCCGAAACAATTGAACCCGATCAAACAAGTGAG
AATATTCAATCAAGCTCAACCGATGAAATCCCTGTAACAACTTCAGAAAA
CATTCAATCGACTGACAATGCTGAGACAACCAAAGGTATAGTTACCATGA
CAACTGACATCTCCACTGAAGAACTGCGCATGACAGAAGAAATTCTCACA
ACAAAGCCAACTCGCGAAACAACAACCCATGGAAAAATCAGAAAACCAAA
ACTCTCTGCTATCATTCGAAATGAATATTCTCGTAGTTGCAACTTTTTGT
GTATTTTTTGTATTGTTGGTTAAGATGAAAGCGATGGAGAGAAAACAACG
TACATTGGGTGCCATTGTCATGAAGCTCAACACCAGACTCGTTCGATTGG
TGTTGAAAACAAAAATGAAGAAAATCTCGCTTTAGTGATCACCCAATCGA
AGACAATCGACCATTACAAAAATGACCTCTTTCAGAACCCGACAGATGAC
AACGACGATCTTTATCAAGATGTCGATTTTGTTGTTAATTCAGTGGCCGA
TGATGAGGACGAAATTTTTGAAGAATTAGAGGATCTGGACAGCCAAGGTG
TTGGACACCTGGTTTATAATGGAGATGAAAATATGGCTCCGACGAAACGC
ATTTCGACGTCGACTACTTCGACTGAGACGATTCCAACTACGCAAACTAC
TACCGAGATTACCCCAAAAGCCGAAATTATTCCGACAACTGCTACCGAAA
TTCTTGTGACAACTTCTGACGAACCTAAAGCATCCACCGAAAATATTCCC
GAAACAATTGAACCCGATCAAACAAGTGAGAATATTCAATCAAGCTCAAC
CGATGAAATCCCTGTAACAACTTCAGAAAACATTCAATCGACTGACAATG
CTGAGACAACCAAAGGTATAGTTACCATGACAACTGACATCTCCACTGAA
GAACTGCGCATGACAGAAGAAATTCTCACAACAAAGCCAACTCGCGAAAC
AACAACCCATGGAAAAATCAGAAAACCAAAACTCTCTGCTATCATTCGAA
ATGAATATTCTCGTAGTTGCAACTTTTTGTGTATTTTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006076XLOC_006076Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010835-proteinTCONS_00010835-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010835-exon-sc0000117-1575043694:521654..521819TCONS_00010835-exon-sc0000117-1575043694:521654..521819Clytia hemisphaericaexon
TCONS_00010835-exon-sc0000117-1575043694:520765..521379TCONS_00010835-exon-sc0000117-1575043694:520765..521379Clytia hemisphaericaexon
TCONS_00010835-exon-sc0000117-1575043694:518556..518807TCONS_00010835-exon-sc0000117-1575043694:518556..518807Clytia hemisphaericaexon
TCONS_00010835-exon-sc0000117-1510915933:521654..521819TCONS_00010835-exon-sc0000117-1510915933:521654..521819Clytia hemisphaericaexon
TCONS_00010835-exon-sc0000117-1510915933:520765..521379TCONS_00010835-exon-sc0000117-1510915933:520765..521379Clytia hemisphaericaexon
TCONS_00010835-exon-sc0000117-1510915933:518556..518807TCONS_00010835-exon-sc0000117-1510915933:518556..518807Clytia hemisphaericaexon
TCONS_00010835-exon-sc0000117-1491911889:521654..521819TCONS_00010835-exon-sc0000117-1491911889:521654..521819Clytia hemisphaericaexon
TCONS_00010835-exon-sc0000117-1491911889:520765..521379TCONS_00010835-exon-sc0000117-1491911889:520765..521379Clytia hemisphaericaexon
TCONS_00010835-exon-sc0000117-1491911889:518556..518807TCONS_00010835-exon-sc0000117-1491911889:518556..518807Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000117supercontigsc0000117:518556..521819 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
979.9	1007.28	580.657	473.601	36.6957	28.3551	4.04089	5.54499	1.0159	5.21318	1.0469	0.315422	0.0286349	0.11895	0.0488967	0	0.0969648	0.0993858	0.137307	0	2.53934	1.70561	307.11	245.008	0	0	16.7667	21.3592	108.814	151.568
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010835 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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