TCONS_00010833 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010833
Unique NameTCONS_00010833
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2239

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010833 ID=TCONS_00010833|Name=TCONS_00010833|organism=Clytia hemisphaerica|type=transcript|length=2239bp
GCTTAAATAAAAATATGTAACAAAAACAGTTTGACTTTAATAACAACATT
TACACGGATCCCTTTTCTATGCATTCTTCATCGACCAATAGAAATGTTGA
TACCATCTGAACCAAAATATATTAAGGGTCAAAAGTATGAATCGAAGAGG
CGGTGAGACAGCTGCTTTCGATTTTAGAGATAATTCATCAGCGAGTGAAA
CATCTATTTTCTCGACAGTCTCTTGGTACCGATTGGAATATGCATTTGAA
AATGACTGTTTGAAACGATGTTGCTGTATGACACGAAAGCGTCACGAAAG
CATGGAGTCCGACACAGAGGATGATAATGAGGACCGTGGCGGGAACGACC
ATGCAGACACGGAAGATACGAAACCGTTGTTCCCTAAAGCTACCATTTCT
ATTAACACGTTGAAAAGGAAGAACAAGAAATCGAAGAAGAAGGAGTATAA
AAGGAAGATTAGTTATTATGGGACTGTTCATCGTAATCTGGCACAGCAAA
CTGATCCCATCGTTGATGAATGAGTGAAAGATAAGCCAAGTCAACATCGT
CCCCCAGTATATTCTAGGCTTTATTTAAGCTATTATTGGACGCCGGAGAA
TATTATCTGGCACTAACAGGAAACATCGGAAAGCCCATAATACGCATAGC
AGTGATGCCCATGTGACTTGTAGACGAAGTTCTGCTATTTGACTTtgtta
ttcgataatattgaaagtcctCATCGTTGATGAACGAGTGAAAGATAACG
AGGTCAATCTCGTCCCAGTATACTCTGGGCTTTATTTAAGGTGATGATGA
GAATACCCATTTGGCACTATTGTGCATCATAAAGACGATAATACACAAGG
ATGACCACGTGACTTGTAGAATTAATTACAGTTAAAGCTATCNCACTATT
GTGCATCATAAAGACGATAATACACAAGGATGACCACGTGACTTGTAGAA
TTAATTACAGTTAAAGCTCTCTAATCCGACATTTCTATgtgctccattat
tcgataattttgaaagtggtcGTCAACAAAAAACCCTCATAAACAACGGT
CTACCATTCGATgcactcccttattcgatgcaAATCCAATtgcccttgaa
aatcgaattagagagcattgACTGCACCTTTGTTTAGAATTCAAAGATGG
TCATGGTACTCATGATTTATGggaagagaaaaagaaatacTATCTGATGA
TTAAAGTGAAAAACTACCTACGAATTGCAGGTCTCTTTGGGTGCTTTCGT
GTAAAACAGATCGTTACATTGGGCAATTCAAGACTGAGGAAGTGATCAAG
GTAAACTGGACAATAAAAGTGGACAATTGACGTGCGAGTGAAACTGAAAG
GTTTAAGTAGGAGGGGAGAGCGTTTCCATTCATTCAATATTACCTATAAA
ACATACTTCGAGGTAAAAAAACATGATTTAACATGttgcaaaatgaaaaa
ttggaatATTGACTTTCTAGAGATTTTTCTGAATAATGAACAGTCATAAA
AGACTAAAAAAAAATATGAGAGTCAAGTATTTCGGAAGCTGTGAATGTTT
TTTACTCAAGAATTTAGATATTATTACAACATCTTTagttcaaaatcaat
tttcatttaaaagcgTTATATAAATACTTTACAAGAAATATTGTTTGTAT
TTATTCTTCCCCACGGGAACCAGTCGGTTTTCGTGATACTTTTGGCCCAC
GGGTTCCGGTTGGTTTTCGTGATCCTTTTGGTCCACGGGTACCAGTTGGT
TTTCGTGATCCTTTTGGTCCACGGGTACCAGTTGGTTTTCGGGAGCCTCG
TCTTGGGTCTTCTACTTCAGTAGGGCGTGGTCCACGAGTTCCAGTTGGTT
TTCGTGATCCTTTTGGTCCACGGGTTCCGGTTGGTTTTCCCGATCCTTTT
GGTCCACGGGTACCAGTTGGTTTTCGTGATCCTTTTGGTCCACGGGTACC
AGTTGGTTTTCGTGAGCCTTGTCTTGGGTCTTCTACTTCAGTAGGGCGTG
GTCCAAGGGTTCCAGTTGGTTTTCGTGATCCTTTTGGTCCACGGGTTCCG
GTTGGTTTTCGTGATCCTTTTGGTCCACGGGTACCAGTTGGTTTTCGTGA
TCTTTTTGGTCCACGGGTACCAGTTGGTTTTCGTGATCCTCGTCTTGGGT
CTTCTACTTCAGTAGGGCGTGGTCCACGGGTTCCAGTTGGTTTTCGTGAT
CCTTTTGGTCCACGGGTTCCAGTTGGTTTTCGTGATCCN
Run BLAST on NCBI

transcript from alignment at sc0000117:430683..433645-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010833 ID=TCONS_00010833|Name=TCONS_00010833|organism=Clytia hemisphaerica|type=transcript|length=2963bp|location=Sequence derived from alignment at sc0000117:430683..433645- (Clytia hemisphaerica)
GCTTAAATAAAAATATGTAACAAAAACAGTTTGACTTTAATAACAACATT
TACACGGATCCCTTTTCTATGCATTCTTCATCGACCAATAGAAATGTTGA
TACCATCTGAACCAAAATATATTAAGGGTCAAAAGTATGAATCGAAGAGG
CGGTGAGACAGCTGCTTTCGATTTTAGAGATAATTCATCAGCGAGTGAAA
CATCTATTTTCTCGACAGTCTCTTGGTACCGATTGGAATATGCATTTGAA
AATGTAAGGGTGAGTAGAATGAAAAATATTTTTCTTAAACAAGGAAGCTC
CCTCAGTTAGAGAAATCTCTGTCCCCTAGTATACTATCAGTAGGAACCAC
TTTAAGTTTCAAGCCCTACTTTTTCAAGCTTCAAGCTTCTTTTTTCATGC
AGATTTACAGCTGAAAAATATAGTGCACTATAAGGATTGGGTCAATCAAG
AGAAAATGCACTGAAAGGGTACCTTTTCAGCCATATTGAACTGCACTGTA
AGGGTACGATTTTGAAAAGCAGATTTTGCGCGGCACATACCGTCGTTTCG
AAATCAAGTGGCCCCCCGAATCCTATCGTCTACACATTATCACTAAAAAA
TAATTCAGGAGGCGGGATAAATTTGAAAACGGAGTGGCGGAAGTGTTTAC
AGTGTTCCAAATTCTACCATCACCTTTTTCCTGTAAACCGCCCTGACGCC
CTGACTCTGCGCATATATATTTTCCCACGTTTATTGTGACCCGCCAATCC
CTGAAAACGAAGGCCTCTCACTCCAAAATTCTTGACGCGGTCTTGCAAAA
TTCCGTAATCTAAACCTTTATCCAAATGTTGAATTTTTCCGACATTCAAA
GCTTTAGCGTGTTGGATGAAAACTTCTGCATCTGGGGCCAAAAAACTGAT
AAATCAGAACATCAAACAACCGACTGAAGGCCGTTAAACAGTCATATTCT
TTTCATTTTCGTCCCTTTTTGTAATAGGACTGTTTGAAACGATGTTGCTG
TATGACACGAAAGCGTCACGAAAGCATGGAGTCCGACACAGAGGATGATA
ATGAGGACCGTGGCGGGAACGACCATGCAGACACGGAAGATACGAAACCG
TTGTTCCCTAAAGCTACCATTTCTATTAACACGTTGAAAAGGAAGAACAA
GAAATCGAAGAAGAAGGAGTATAAAAGGAAGATTAGTTATTATGGGACTG
TTCATCGTAATCTGGCACAGCAAACTGATCCCATCGTTGATGAATGAGTG
AAAGATAAGCCAAGTCAACATCGTCCCCCAGTATATTCTAGGCTTTATTT
AAGCTATTATTGGACGCCGGAGAATATTATCTGGCACTAACAGGAAACAT
CGGAAAGCCCATAATACGCATAGCAGTGATGCCCATGTGACTTGTAGACG
AAGTTCTGCTATTTGACTTTGTTATTCGATAATATTGAAAGTCCTCATCG
TTGATGAACGAGTGAAAGATAACGAGGTCAATCTCGTCCCAGTATACTCT
GGGCTTTATTTAAGGTGATGATGAGAATACCCATTTGGCACTATTGTGCA
TCATAAAGACGATAATACACAAGGATGACCACGTGACTTGTAGAATTAAT
TACAGTTAAAGCTATCNCACTATTGTGCATCATAAAGACGATAATACACA
AGGATGACCACGTGACTTGTAGAATTAATTACAGTTAAAGCTCTCTAATC
CGACATTTCTATGTGCTCCATTATTCGATAATTTTGAAAGTGGTCGTCAA
CAAAAAACCCTCATAAACAACGGTCTACCATTCGATGCACTCCCTTATTC
GATGCAAATCCAATTGCCCTTGAAAATCGAATTAGAGAGCATTGACTGCA
CCTTTGTTTAGAATTCAAAGATGGTCATGGTACTCATGATTTATGGGAAG
AGAAAAAGAAATACTATCTGATGATTAAAGTGAAAAACTACCTACGAATT
GCAGGTCTCTTTGGGTGCTTTCGTGTAAAACAGATCGTTACATTGGGCAA
TTCAAGACTGAGGAAGTGATCAAGGTAAACTGGACAATAAAAGTGGACAA
TTGACGTGCGAGTGAAACTGAAAGGTTTAAGTAGGAGGGGAGAGCGTTTC
CATTCATTCAATATTACCTATAAAACATACTTCGAGGTAAAAAAACATGA
TTTAACATGTTGCAAAATGAAAAATTGGAATATTGACTTTCTAGAGATTT
TTCTGAATAATGAACAGTCATAAAAGACTAAAAAAAAATATGAGAGTCAA
GTATTTCGGAAGCTGTGAATGTTTTTTACTCAAGAATTTAGATATTATTA
CAACATCTTTAGTTCAAAATCAATTTTCATTTAAAAGCGTTATATAAATA
CTTTACAAGAAATATTGTTTGTATTTATTCTTCCCCACGGGAACCAGTCG
GTTTTCGTGATACTTTTGGCCCACGGGTTCCGGTTGGTTTTCGTGATCCT
TTTGGTCCACGGGTACCAGTTGGTTTTCGTGATCCTTTTGGTCCACGGGT
ACCAGTTGGTTTTCGGGAGCCTCGTCTTGGGTCTTCTACTTCAGTAGGGC
GTGGTCCACGAGTTCCAGTTGGTTTTCGTGATCCTTTTGGTCCACGGGTT
CCGGTTGGTTTTCCCGATCCTTTTGGTCCACGGGTACCAGTTGGTTTTCG
TGATCCTTTTGGTCCACGGGTACCAGTTGGTTTTCGTGAGCCTTGTCTTG
GGTCTTCTACTTCAGTAGGGCGTGGTCCAAGGGTTCCAGTTGGTTTTCGT
GATCCTTTTGGTCCACGGGTTCCGGTTGGTTTTCGTGATCCTTTTGGTCC
ACGGGTACCAGTTGGTTTTCGTGATCTTTTTGGTCCACGGGTACCAGTTG
GTTTTCGTGATCCTCGTCTTGGGTCTTCTACTTCAGTAGGGCGTGGTCCA
CGGGTTCCAGTTGGTTTTCGTGATCCTTTTGGTCCACGGGTTCCAGTTGG
TTTTCGTGATCCN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006074XLOC_006074Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010833-exon-sc0000117-1575043694:433393..433645TCONS_00010833-exon-sc0000117-1575043694:433393..433645Clytia hemisphaericaexon
TCONS_00010833-exon-sc0000117-1575043694:430683..432668TCONS_00010833-exon-sc0000117-1575043694:430683..432668Clytia hemisphaericaexon
TCONS_00010833-exon-sc0000117-1510915933:433393..433645TCONS_00010833-exon-sc0000117-1510915933:433393..433645Clytia hemisphaericaexon
TCONS_00010833-exon-sc0000117-1510915933:430683..432668TCONS_00010833-exon-sc0000117-1510915933:430683..432668Clytia hemisphaericaexon
TCONS_00010833-exon-sc0000117-1491911889:433393..433645TCONS_00010833-exon-sc0000117-1491911889:433393..433645Clytia hemisphaericaexon
TCONS_00010833-exon-sc0000117-1491911889:430683..432668TCONS_00010833-exon-sc0000117-1491911889:430683..432668Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000117supercontigsc0000117:430683..433645 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.455106	0.367594	0.120008	0	0.526723	0	0	0.0125537	0.754613	0.79033	2.219	1.07953	170.407	83.9883	2.19788	2.9485	1.67715	0.598262	1150.03	976.378	3.58372	3.48361	4.70109	11.701	7.08886	1.85696	0.931798	1.42399	1.55262	0.853829
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010833 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top