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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010831 ID=TCONS_00010831|Name=TCONS_00010831|organism=Clytia hemisphaerica|type=transcript|length=1236bp
ATGAAACATACTTTTTTATCTTATCAGAAGTAAAAGGGATACGAGGCAAA
CAAATAAGGCAAGGTTCATGTTCTAGCTTCAACAATGCAGAAAATCCTAT
AAAAAGCCAAACCGACTGATCAAAAATGATATCTTTGCAAGCTGCAAAAA
AGAGGAACATGGATCTGAAACTTATCCTTGCTTTCTTGCCGGTCATCCAA
TGTATGGTGGTTGCAAATAACACAAATGACATCACCAAGCTGAAAAGTGA
TTTAAAGCTCCTTGAAGCTAAGTACAGTCGATTGGAGGATGGAATGAAAT
TCTCTTCACCTTATTGCGAAAAATACGTTAAGGGAGCTTGTGGATCATGC
ATTTGTAAAGATGATTTCAACCTTCCCAAGAAGTATTACTGTGATTGCCG
GAACCAATCACCACAACGCGATTGCCTTGCACATCGACAAAATGGGATGA
AGATTGATGGCATTTATGAGATCACGATGAATAGTTATTTGAACACTGTT
GCGTTTTGTGATCAAACAACTTTGGGAGGCGGTTGGACCGTCATTCAAAG
ACGTATGGACGGGTCCACAAACTTCTTCAGAAGTTGGAATGAGTATAAGG
TTGGTTTCGGTCAATTGCATCGAGAATTTTGGTTTGGAAATGACAAGATT
CATTATTTGACTGCCCAGGCAATACTTCCAAAGGGATCAGAAGCTTTGAT
TCAAGTCAAATTTCTCGGGAATGGTTTCAATCCTAACACCATCTACAATA
ACCGATACTCACATTTCCATATCGATAACGAAAAGCACGCTTATGAGCTC
CACGTGACTGGCCCTTCAGGAGGGCATTACCCAGAATATTTtaccaaata
tcaaaataaccaaaaattttCGACCTGGGACCGAGATAACGATCAATCAT
CATCATACAATTGTGCATACAGTTATCAAAAAGCTGGTTGGTGGATCAAC
GGTGATACCAATTCTTGTACAACTGGCCGAGAGTTCAACAGTATCAACAA
TCCTTATGACGCTGCAAACACACAAACATGGTATCACAGAATCTCTTGGT
ATAACTTGAAGGTATCTTTCACTGCCATGAAAGTTCGACGATTACAGTAA
AACGGACGCGaccaaaagaataaaaaacaaacatttattttcgtaaagtt
taaaaaaagtgtaatcttTCAGGGTAATAATTTGGTATGTGGTTCATTTA
AtaggaaaatataaaatatgGTCATTTCAAGCGcaa Run BLAST on NCBI protein sequence of TCONS_00010831-protein >TCONS_00010831-protein ID=TCONS_00010831-protein|Name=TCONS_00010831-protein|organism=Clytia hemisphaerica|type=polypeptide|length=324bp
MISLQAAKKRNMDLKLILAFLPVIQCMVVANNTNDITKLKSDLKLLEAKY
SRLEDGMKFSSPYCEKYVKGACGSCICKDDFNLPKKYYCDCRNQSPQRDC
LAHRQNGMKIDGIYEITMNSYLNTVAFCDQTTLGGGWTVIQRRMDGSTNF
FRSWNEYKVGFGQLHREFWFGNDKIHYLTAQAILPKGSEALIQVKFLGNG
FNPNTIYNNRYSHFHIDNEKHAYELHVTGPSGGHYPEYFTKYQNNQKFST
WDRDNDQSSSYNCAYSYQKAGWWINGDTNSCTTGREFNSINNPYDAANTQ
TWYHRISWYNLKVSFTAMKVRRLQ Run BLAST on NCBI transcript from alignment at sc0000117:349034..351012- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010831 ID=TCONS_00010831|Name=TCONS_00010831|organism=Clytia hemisphaerica|type=transcript|length=1979bp|location=Sequence derived from alignment at sc0000117:349034..351012- (Clytia hemisphaerica)
ATGAAACATACTTTTTTATCTTATCAGAAGTAAAAGGGATACGAGGCAAA
CAAATAAGGCAAGGTTCATGTTCTAGCTTCAACAATGCAGAAAATCCTAT
AAAAAGCCAAACCGACTGATCAAAAATGATATCTTTGCAAGCTGCAAAAA
AGAGGAACATGGATCTGAAACTTATCCTTGCTTTCTTGCCGGTCATCCAA
TGTATGGTGGTTGCAAATAACACAAATGACATCACCAAGCTGAAAAGTGA
TTTAAAGCTCCTTGAAGCTAAGTACAGTCGATTGGAGGATGGAATGAAAT
TCTCTTCACCTTATTGCGAAAAATACGTTAAGGGAGCTTGTGGATCATGC
ATTTGTAAAGATGATTTCAACCTTCCCAAGAAGTATTACTGTGATTGCCG
GAACCAATCACCACAACGCGATTGCCTTGCACATCGACAAAATGGGATGA
AGATTGATGGCATTTATGAGATCACGATGAATAGTTATTTGAACACTGTT
GCGTTTTGTGATCAAACAACTTTGGGAGGCGGTTGGACCGTCATTCAAAG
ACGTATGGACGGGTCCACAAACTTCTTCAGAAGTTGGAATGAGTATAAGG
TATGAAAAATGTTATTTTATTGCTTCACTTTTCTTTACTGTATCGCTATA
CTTTATCACCCGAGGAAGTTTTTATCTTTTAGGTAATGAATAATTCTCAT
CTAATTCAAATACCGGGTGCACCAAAAAAAAGNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNGTATAGAGGATGCTCTAACTTGAATTTTGAGCTATTATA
CATTAAATTTGAAAACGTAGTTCGAAAATTATTTAAAAAAAACTGACTTT
TTTTTAATGTCGACATTTAAATCCTGAAGCTCACAATATCTCGACAAACC
TGTATACTTTTTTATGGTGCACCCGGTAGATTTCTTGTATTTTCATGAAA
TGAAAGCTTTCCATGGATTACTTTTTAAATAGAACACCTATCGAATATAG
TTAATATGATATCGAGAAATAAAGACCTGGCTGACAAATTTATAGATAAA
CCCTATCAACCCTTGCAGAGCAATTATTGCCATATATTGAATCTTTGAGA
GCTTTTCTTTGTTATTTTACTATGTAAGTTATAACCATTTTTGTCTGATC
ACATTTTTTTTGTTCATCCTGTAATTTTTATCTCAATATCAGGTTGGTTT
CGGTCAATTGCATCGAGAATTTTGGTTTGGAAATGACAAGATTCATTATT
TGACTGCCCAGGCAATACTTCCAAAGGGATCAGAAGCTTTGATTCAAGTC
AAATTTCTCGGGAATGGTTTCAATCCTAACACCATCTACAATAACCGATA
CTCACATTTCCATATCGATAACGAAAAGCACGCTTATGAGCTCCACGTGA
CTGGCCCTTCAGGAGGGCATTACCCAGAATATTTTACCAAATATCAAAAT
AACCAAAAATTTTCGACCTGGGACCGAGATAACGATCAATCATCATCATA
CAATTGTGCATACAGTTATCAAAAAGCTGGTTGGTGGATCAACGGTGATA
CCAATTCTTGTACAACTGGCCGAGAGTTCAACAGTATCAACAATCCTTAT
GACGCTGCAAACACACAAACATGGTATCACAGAATCTCTTGGTATAACTT
GAAGGTATCTTTCACTGCCATGAAAGTTCGACGATTACAGTAAAACGGAC
GCGACCAAAAGAATAAAAAACAAACATTTATTTTCGTAAAGTTTAAAAAA
AGTGTAATCTTTCAGGGTAATAATTTGGTATGTGGTTCATTTAATAGGAA
AATATAAAATATGGTCATTTCAAGCGCAA Coding sequence (CDS) from alignment at sc0000117:349034..351012- >TCONS_00010831 ID=TCONS_00010831|Name=TCONS_00010831|organism=Clytia hemisphaerica|type=CDS|length=1950bp|location=Sequence derived from alignment at sc0000117:349034..351012- (Clytia hemisphaerica)
GTTGGTTTCGGTCAATTGCATCGAGAATTTTGGTTTGGAAATGACAAGAT
TCATTATTTGACTGCCCAGGCAATACTTCCAAAGGGATCAGAAGCTTTGA
TTCAAGTCAAATTTCTCGGGAATGGTTTCAATCCTAACACCATCTACAAT
AACCGATACTCACATTTCCATATCGATAACGAAAAGCACGCTTATGAGCT
CCACGTGACTGGCCCTTCAGGAGGGCATTACCCAGAATATTTTACCAAAT
ATCAAAATAACCAAAAATTTTCGACCTGGGACCGAGATAACGATCAATCA
TCATCATACAATTGTGCATACAGTTATCAAAAAGCTGGTTGGTGGATCAA
CGGTGATACCAATTCTTGTACAACTGGCCGAGAGTTCAACAGTATCAACA
ATCCTTATGACGCTGCAAACACACAAACATGGTATCACAGAATCTCTTGG
TATAACTTGAAGGTATCTTTCACTGCCATGAAAGTTCGACGATTACAGTA
AATGATATCTTTGCAAGCTGCAAAAAAGAGGAACATGGATCTGAAACTTA
TCCTTGCTTTCTTGCCGGTCATCCAATGTATGGTGGTTGCAAATAACACA
AATGACATCACCAAGCTGAAAAGTGATTTAAAGCTCCTTGAAGCTAAGTA
CAGTCGATTGGAGGATGGAATGAAATTCTCTTCACCTTATTGCGAAAAAT
ACGTTAAGGGAGCTTGTGGATCATGCATTTGTAAAGATGATTTCAACCTT
CCCAAGAAGTATTACTGTGATTGCCGGAACCAATCACCACAACGCGATTG
CCTTGCACATCGACAAAATGGGATGAAGATTGATGGCATTTATGAGATCA
CGATGAATAGTTATTTGAACACTGTTGCGTTTTGTGATCAAACAACTTTG
GGAGGCGGTTGGACCGTCATTCAAAGACGTATGGACGGGTCCACAAACTT
CTTCAGAAGTTGGAATGAGTATAAGGTTGGTTTCGGTCAATTGCATCGAG
AATTTTGGTTTGGAAATGACAAGATTCATTATTTGACTGCCCAGGCAATA
CTTCCAAAGGGATCAGAAGCTTTGATTCAAGTCAAATTTCTCGGGAATGG
TTTCAATCCTAACACCATCTACAATAACCGATACTCACATTTCCATATCG
ATAACGAAAAGCACGCTTATGAGCTCCACGTGACTGGCCCTTCAGGAGGG
CATTACCCAGAATATTTTACCAAATATCAAAATAACCAAAAATTTTCGAC
CTGGGACCGAGATAACGATCAATCATCATCATACAATTGTGCATACAGTT
ATCAAAAAGCTGGTTGGTGGATCAACGGTGATACCAATTCTTGTACAACT
GGCCGAGAGTTCAACAGTATCAACAATCCTTATGACGCTGCAAACACACA
AACATGGTATCACAGAATCTCTTGGTATAACTTGAAGGTATCTTTCACTG
CCATGAAAGTTCGACGATTACAGTAAATGATATCTTTGCAAGCTGCAAAA
AAGAGGAACATGGATCTGAAACTTATCCTTGCTTTCTTGCCGGTCATCCA
ATGTATGGTGGTTGCAAATAACACAAATGACATCACCAAGCTGAAAAGTG
ATTTAAAGCTCCTTGAAGCTAAGTACAGTCGATTGGAGGATGGAATGAAA
TTCTCTTCACCTTATTGCGAAAAATACGTTAAGGGAGCTTGTGGATCATG
CATTTGTAAAGATGATTTCAACCTTCCCAAGAAGTATTACTGTGATTGCC
GGAACCAATCACCACAACGCGATTGCCTTGCACATCGACAAAATGGGATG
AAGATTGATGGCATTTATGAGATCACGATGAATAGTTATTTGAACACTGT
TGCGTTTTGTGATCAAACAACTTTGGGAGGCGGTTGGACCGTCATTCAAA
GACGTATGGACGGGTCCACAAACTTCTTCAGAAGTTGGAATGAGTATAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010831-exon-sc0000117-1575043694:350414..351012 | TCONS_00010831-exon-sc0000117-1575043694:350414..351012 | Clytia hemisphaerica | exon |
| TCONS_00010831-exon-sc0000117-1575043694:349034..349670 | TCONS_00010831-exon-sc0000117-1575043694:349034..349670 | Clytia hemisphaerica | exon |
| TCONS_00010831-exon-sc0000117-1510915933:350414..351012 | TCONS_00010831-exon-sc0000117-1510915933:350414..351012 | Clytia hemisphaerica | exon |
| TCONS_00010831-exon-sc0000117-1510915933:349034..349670 | TCONS_00010831-exon-sc0000117-1510915933:349034..349670 | Clytia hemisphaerica | exon |
| TCONS_00010831-exon-sc0000117-1491911889:350414..351012 | TCONS_00010831-exon-sc0000117-1491911889:350414..351012 | Clytia hemisphaerica | exon |
| TCONS_00010831-exon-sc0000117-1491911889:349034..349670 | TCONS_00010831-exon-sc0000117-1491911889:349034..349670 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000117 | supercontig | sc0000117:349034..351012 - |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00010831 vs. Swiss-Prot (Human)
Match: TENR (Tenascin-R OS=Homo sapiens GN=TNR PE=1 SV=3) HSP 1 Score: 125.946 bits (315), Expect = 1.173e-30 Identity = 82/239 (34.31%), Postives = 118/239 (49.37%), Query Frame = 3
Query: 411 PQRDCLAHRQNGMKIDGIYEITMNSYLNT--VAFCDQTTLGGGWTVIQRRMDGSTNFFRSWNEYKVGFGQLHREFWFGNDKIHYLTAQAI------LPKGSEALIQVKFLGNGFNPNTIYNNRYSHFHIDNEKHAYELHVTGPSGGHYPEYFTKYQNNQKFSTWDRDNDQSSSYNCAYSYQKAGWWINGDTNSCTTGREFNSINNPY-DAANTQ--TWYHRISW--YNLKVSFTAMKVR 1088
PQ DC H NG + G+Y I +N L+ +CD TT GGGW V QRR +G T+FFR W +Y+VGFG + EFW G D IH +T+Q + G EA Y F +++ ++ Y+L + G G + + Y + FST DRDND + + NCA SY+ A W+ N C ++N Y ++ ++Q WYH W + + F MK+R
Sbjct: 1135 PQ-DCAQHLMNGDTLSGVYPIFLNGELSQKLQVYCDMTTDGGGWIVFQRRQNGQTDFFRKWADYRVGFGNVEDEFWLGLDNIHRITSQGRYELRVDMRDGQEAAFA----------------SYDRFSVEDSRNLYKLRI-GSYNGTAGDSLS-YHQGRPFSTEDRDNDVAVT-NCAMSYKGAWWYKN-----CHR----TNLNGKYGESRHSQGINWYH---WKGHEFSIPFVEMKMR 1341
The following BLAST results are available for this feature:
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