TCONS_00010830 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010830
Unique NameTCONS_00010830
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1054

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010830 ID=TCONS_00010830|Name=TCONS_00010830|organism=Clytia hemisphaerica|type=transcript|length=1054bp
ATATCATTTTCATCAGCAGAGCacgctttgaaaggtgaaaaggtTTAAGA
ATGAAGATTTTTGCATGTTTACTGTTGCTCCTGTCCATCTATATGGTTAA
TGGAGACAACACCAGTGATATCAAGACGTTGAAAAGCAGTCTCCAGCTTC
TGTTAAAACGCATCGAATTAAAATCCTCTTATTGTTTTGCGCAAGCTCAA
GGACAATGTGGCACGTGCATTTGCAAAGACGATTTCAACCTTCCCAAGAA
GTATTACTGTGATTGCCGGAACCAATCACCACAACGCGATTGCCTTGCAC
ATCGACAAAATGGGATGAAGATTGACGGTTATTATACAGTCACAATGAAT
GGATATCGAACGACTCAAGTTTATTGCGATCAAACAACTTCAGGAGGCGG
TTGGACCGTTATACAAAGACGTATGGATGGATCCACAAATTTCTTCAGAA
GATGGAATGAATATAAGGTTGGATTCGGTAAACTTCATCGAGAATTTTGG
TTGGGCAATGAAAACATACATCTTTTGAGTCTACAAGCTGTTTATCCGAA
AGGCTCAGAATTAATGATAAATATGAGGCTGCAAAGTTACACAGGTAATT
ATTGGAACCGTTACAGTCATTTCCAGGTGGACAGTGAAAGAAGCCATTAT
CTTCTCCATGTTAGTGGACCCTCTGGGAATCTCCACCAGACCTACTTCAC
ATCCTACCAAAACAAGGTTGAATTTTCAACATGGGATAAAGACCGAGACG
GTTCGTCTTCTTATAATTGTGCTAGAGATTACCAATTCTCTGGTTGGTGG
ATCAATGGGGCGGGCAATAGTTGCACAGGTTACCAAGCAGCTGGCTTTAA
TCTAAATGGTCCATACGATAAGTACCGTACTAGAGGGTGGTACCAGAGGA
TCAATACATACGCTAAATATCATCCAACCTTTGTTGAGATGAAAGTACGT
CGCTTGTAAAAATTATATTGATTTGTTTCATTACAATTTTTATTACAATA
GAATCCAAACTATAAGCTTAAATAATTTTGTACTTTATTGTTGTTACATT
TCCC
Run BLAST on NCBI

transcript from alignment at sc0000117:342939..344272-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010830 ID=TCONS_00010830|Name=TCONS_00010830|organism=Clytia hemisphaerica|type=transcript|length=1334bp|location=Sequence derived from alignment at sc0000117:342939..344272- (Clytia hemisphaerica)
ATATCATTTTCATCAGCAGAGCACGCTTTGAAAGGTGAAAAGGTTTAAGA
ATGAAGATTTTTGCATGTTTACTGTTGCTCCTGTCCATCTATATGGTTAA
TGGAGACAACACCAGTGATATCAAGACGTTGAAAAGCAGTCTCCAGCTTC
TGTTAAAACGCATCGAATTAAAATCCTCTTATTGTTTTGCGCAAGCTCAA
GGACAATGTGGCACGTGCATTTGCAAAGACGATTTCAACCTTCCCAAGAA
GTATTACTGTGATTGCCGGAACCAATCACCACAACGCGATTGCCTTGCAC
ATCGACAAAATGGGATGAAGATTGACGGTTATTATACAGTCACAATGAAT
GGATATCGAACGACTCAAGTTTATTGCGATCAAACAACTTCAGGAGGCGG
TTGGACCGTTATACAAAGACGTATGGATGGATCCACAAATTTCTTCAGAA
GATGGAATGAATATAAGGTAAATTGTGACTCTTCTTCCCTTTTTCAGTTC
TTTAAGAATATTTCTGTTCAAAATACTCTTCCCAGTCCTTTTTGAATTGT
TGCTGCTTTTTAATCATGCAAATGCCCTTTATAGGTTTTTTGTAGATATT
ATTCATTGACTCTTATTGGTGGGCAGCTTTTATGACAGCGTGCATGATTT
TAATTTTGTTAAATACATCAATGAATTTTTAACATGACCTCCACCTTGTT
GTCAAAGGACCTTTGTTATTTCATATTTTTTGTTACATTTCTTTCAGGTT
GGATTCGGTAAACTTCATCGAGAATTTTGGTTGGGCAATGAAAACATACA
TCTTTTGAGTCTACAAGCTGTTTATCCGAAAGGCTCAGAATTAATGATAA
ATATGAGGCTGCAAAGTTACACAGGTAATTATTGGAACCGTTACAGTCAT
TTCCAGGTGGACAGTGAAAGAAGCCATTATCTTCTCCATGTTAGTGGACC
CTCTGGGAATCTCCACCAGACCTACTTCACATCCTACCAAAACAAGGTTG
AATTTTCAACATGGGATAAAGACCGAGACGGTTCGTCTTCTTATAATTGT
GCTAGAGATTACCAATTCTCTGGTTGGTGGATCAATGGGGCGGGCAATAG
TTGCACAGGTTACCAAGCAGCTGGCTTTAATCTAAATGGTCCATACGATA
AGTACCGTACTAGAGGGTGGTACCAGAGGATCAATACATACGCTAAATAT
CATCCAACCTTTGTTGAGATGAAAGTACGTCGCTTGTAAAAATTATATTG
ATTTGTTTCATTACAATTTTTATTACAATAGAATCCAAACTATAAGCTTA
AATAATTTTGTACTTTATTGTTGTTACATTTCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006072XLOC_006072Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010830-exon-sc0000117-1575043694:343806..344272TCONS_00010830-exon-sc0000117-1575043694:343806..344272Clytia hemisphaericaexon
TCONS_00010830-exon-sc0000117-1575043694:342939..343525TCONS_00010830-exon-sc0000117-1575043694:342939..343525Clytia hemisphaericaexon
TCONS_00010830-exon-sc0000117-1510915933:343806..344272TCONS_00010830-exon-sc0000117-1510915933:343806..344272Clytia hemisphaericaexon
TCONS_00010830-exon-sc0000117-1510915933:342939..343525TCONS_00010830-exon-sc0000117-1510915933:342939..343525Clytia hemisphaericaexon
TCONS_00010830-exon-sc0000117-1491911889:343806..344272TCONS_00010830-exon-sc0000117-1491911889:343806..344272Clytia hemisphaericaexon
TCONS_00010830-exon-sc0000117-1491911889:342939..343525TCONS_00010830-exon-sc0000117-1491911889:342939..343525Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000117supercontigsc0000117:342939..344272 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.114249	0	0.096424	0.117875	0	0	0	0	0.0353804	0	0	0.0559242	91.491	82.7599	591.88	700.303	47.1423	56.6462	22.0085	14.3377	35.7612	32.9724	336.947	305.869	316.546	369.398	22.4989	26.3924	1165.47	1528.53
Blast
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BLAST of TCONS_00010830 vs. Swiss-Prot (Human)
Match: TENR (Tenascin-R OS=Homo sapiens GN=TNR PE=1 SV=3)

HSP 1 Score: 139.043 bits (349), Expect = 2.379e-35
Identity = 88/230 (38.26%), Postives = 118/230 (51.30%), Query Frame = 3 
Query:  279 PQRDCLAHRQNGMKIDGYYTVTMNG--YRTTQVYCDQTTSGGGWTVIQRRMDGSTNFFRRWNEYKVGFGKLHREFWLGNENIHLLSLQAVYPKGSELMINMRLQSYTGNYWNRYSHFQVDSERSHYLLHVSGPSGNLHQTYFTSYQNKVEFSTWDKDRDGSSSYNCARDYQFSGWWINGAGNSCTGYQAAGFNLNGPYDKYRTRGWYQRINTY----AKYHPTFVEMKVR 950
            PQ DC  H  NG  + G Y + +NG   +  QVYCD TT GGGW V QRR +G T+FFR+W +Y+VGFG +  EFWLG +NIH ++ Q  Y    EL ++MR        +  Y  F V+  R+ Y L +   +G    +   SY     FST D+D D + + NCA  Y+   WW      +         NLNG Y + R     Q IN Y     ++   FVEMK+R
Sbjct: 1135 PQ-DCAQHLMNGDTLSGVYPIFLNGELSQKLQVYCDMTTDGGGWIVFQRRQNGQTDFFRKWADYRVGFGNVEDEFWLGLDNIHRITSQGRY----ELRVDMRDGQEAA--FASYDRFSVEDSRNLYKLRIGSYNGTAGDSL--SYHQGRPFSTEDRDNDVAVT-NCAMSYK-GAWWYKNCHRT---------NLNGKYGESRHS---QGINWYHWKGHEFSIPFVEMKMR 1341
The following BLAST results are available for this feature:
BLAST of TCONS_00010830 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TENR2.379e-3538.26Tenascin-R OS=Homo sapiens GN=TNR PE=1 SV=3[more]
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