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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010826 ID=TCONS_00010826|Name=TCONS_00010826|organism=Clytia hemisphaerica|type=transcript|length=1142bp
ATTTCATCTAAGCTGTCCATAAAAGTAGTTTTTATACTATCTTCGAAAAA
GAAGATCCATAAATCGCGACTTAGGAGCTGATTCTTGGAAAAGCGAAATG
AAAATCTTTGCGTTTCTATTGGTCATTCTACACTCAACCACGACCATCTC
TGGTGATAATACAGCTGATATTCAACAACTGAAGAGTAATTTCCTTCTCC
TACTCAACAACTACAGGGACATCCATAAAAAATATAGTACATTGCAGTCA
AAGTACACTGACTTAGAGAAGAGTGTTAATCTAAAAGCATCTTATTGCCA
GCTTAAGGCTCAAGGCCAATGTGGAGACTGTGTTTGCAGAGATGACTTAA
CACTCACCAAGAAATATTACTGTGATTGCCGGAACCAATCACCACAACGC
GATTGCCTTGCACATCGACAAAATGGGATGAAAATTGATGGTTATTATAC
AGTCACAATGAATGGATATCGAACGACTCTAGTTTATTGTGATCAAACAA
CTTTGGGAGGCGGTTGGACCGTTATACAAAGACGTATGGATGGATCTGTC
AATTTCTACAGGACTTGGGAGCAATACaagATCGGGTTCGGACAACTTCA
CCACGAGTTCTGGCAAGGAAACGAAGAAATACACGTCCTTTGCGCTCAAG
CTCTTTACCCAAAAGGCTCCGAGGCTATGATTCAAATCAAAGTGCAAGGT
CTTGATTACCTATTCACAAACCAATACTCGCATTTCGAAGTCGGCAGTGA
AAGAAGTAATTACTTGTTACAGGTGAGCGGGCCGTCTGGTCATTGGCATC
CGGAATATTTCACCcgatatcaaaacaaagttgaatTTTCGACTTGGGAT
AAGGACAACGACGGAGCTACATCTTACAAATGCGCTTACACGCATCAATT
TTCTGGTTGGTGGATCAATGGCTCAAAGAATAGTTGTACAAATGATGAAG
CAGCCAGTCACAATTTGAACGGCCCGTACGATAAATACCGTACAAAGAAT
TGGTATAATCGGATTACCTTTTTCAGTCAAAACCAGCCGTGGTTCAGTGA
AATTAAGGTTCGCCGTAAAATTTAGTATTTAAACTCAAGTgtaaagtttg
atttttgaagcaAAAGATATAATGAGAAATCATCAATAAACC Run BLAST on NCBI transcript from alignment at sc0000117:335909..337733- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010826 ID=TCONS_00010826|Name=TCONS_00010826|organism=Clytia hemisphaerica|type=transcript|length=1825bp|location=Sequence derived from alignment at sc0000117:335909..337733- (Clytia hemisphaerica)
ATTTCATCTAAGCTGTCCATAAAAGTAGTTTTTATACTATCTTCGAAAAA
GAAGATCCATAAATCGCGACTTAGGAGCTGATTCTTGGAAAAGCGAAATG
AAAATCTTTGCGTTTCTATTGGTCATTCTACACTCAACCACGACCATCTC
TGGTGATAATACAGCTGATATTCAACAACTGAAGAGTAATTTCCTTCTCC
TACTCAACAACTACAGGGACATCCATAAAAAATATAGTACATTGCAGTCA
AAGTACACTGACTTAGAGAAGAGTGTTAATCTAAAAGCATCTTATTGCCA
GCTTAAGGCTCAAGGCCAATGTGGAGACTGTGTTTGCAGAGATGACTTAA
CACTCACCAAGAAATATTACTGTGATTGCCGGAACCAATCACCACAACGC
GATTGCCTTGCACATCGACAAAATGGGATGAAAATTGATGGTTATTATAC
AGTCACAATGAATGGATATCGAACGACTCTAGTTTATTGTGATCAAACAA
CTTTGGGAGGCGGTTGGACCGTTATACAAAGACGTATGGATGGATCTGTC
AATTTCTACAGGACTTGGGAGCAATACAAGGTAATTTTTCTTTTCATAAT
ACGTTTTCTTTTTTTAAAGATTAAACTTGATTATTTATCAATCTAGGTAA
ACAGGAAAGACAACCTCTTTCTCGATATCGAACTTAATCGAGCTTAGTCA
CAAAGAACCATCGGATGGGGGGCACTTGATTCAAAAACAACCATGCATAG
AAAATCTAGTCAAATTTGTGTAAATTCGGGCGAAAAATCGACGGGACCAT
TAAGGACCGCACGTACGGTCGGTTGTTTACCTTGAGTGCCCACTCCCACC
CGGGAAAAAAAGAATAAAAAGATGACTACTGATGTTAATGTATCGTGTTC
TCTTTATCTCGAACTTTCTCAATATACAGCTATACTATTCAATTTGGAGG
TTCTTTTTAACTGAAGCAGCCAGAATAATTGTCCTAATTATAGAGACTCA
TAGAGACACACACTGTAAGGTTATAACATAAGGAGCGATGACCAAGTGGT
CAAAGGCGTCAGCGTCTCAAACCAGGGATTCGTAGTTCGAATCCCCGCTC
CTTCCAATGTTCCGTTCAGTTCATAGATAGCCGAGCCGGCTGGCTGTGGA
CCCCGTGAAAACAATCGAAAGACTGTCTAAAAATCATAGATTACTGGGAT
ATCCAAGTAAAATATCGTTTCTATCTATCTACCTTAAATTGTATTATTTT
TTAATATTGGCAGATCGGGTTCGGACAACTTCACCACGAGTTCTGGCAAG
GAAACGAAGAAATACACGTCCTTTGCGCTCAAGCTCTTTACCCAAAAGGC
TCCGAGGCTATGATTCAAATCAAAGTGCAAGGTCTTGATTACCTATTCAC
AAACCAATACTCGCATTTCGAAGTCGGCAGTGAAAGAAGTAATTACTTGT
TACAGGTGAGCGGGCCGTCTGGTCATTGGCATCCGGAATATTTCACCCGA
TATCAAAACAAAGTTGAATTTTCGACTTGGGATAAGGACAACGACGGAGC
TACATCTTACAAATGCGCTTACACGCATCAATTTTCTGGTTGGTGGATCA
ATGGCTCAAAGAATAGTTGTACAAATGATGAAGCAGCCAGTCACAATTTG
AACGGCCCGTACGATAAATACCGTACAAAGAATTGGTATAATCGGATTAC
CTTTTTCAGTCAAAACCAGCCGTGGTTCAGTGAAATTAAGGTTCGCCGTA
AAATTTAGTATTTAAACTCAAGTGTAAAGTTTGATTTTTGAAGCAAAAGA
TATAATGAGAAATCATCAATAAACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010826-exon-sc0000117-1575043694:337154..337733 | TCONS_00010826-exon-sc0000117-1575043694:337154..337733 | Clytia hemisphaerica | exon |
| TCONS_00010826-exon-sc0000117-1575043694:335909..336470 | TCONS_00010826-exon-sc0000117-1575043694:335909..336470 | Clytia hemisphaerica | exon |
| TCONS_00010826-exon-sc0000117-1510915933:337154..337733 | TCONS_00010826-exon-sc0000117-1510915933:337154..337733 | Clytia hemisphaerica | exon |
| TCONS_00010826-exon-sc0000117-1510915933:335909..336470 | TCONS_00010826-exon-sc0000117-1510915933:335909..336470 | Clytia hemisphaerica | exon |
| TCONS_00010826-exon-sc0000117-1491911889:337154..337733 | TCONS_00010826-exon-sc0000117-1491911889:337154..337733 | Clytia hemisphaerica | exon |
| TCONS_00010826-exon-sc0000117-1491911889:335909..336470 | TCONS_00010826-exon-sc0000117-1491911889:335909..336470 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000117 | supercontig | sc0000117:335909..337733 - |
Blast
BLAST of TCONS_00010826 vs. Swiss-Prot (Human)
Match: FIBG (Fibrinogen gamma chain OS=Homo sapiens GN=FGG PE=1 SV=3) HSP 1 Score: 115.546 bits (288), Expect = 1.900e-28 Identity = 114/358 (31.84%), Postives = 158/358 (44.13%), Query Frame = 2
Query: 92 SEMKIFAFLLVILHSTTTISGDNTADIQQLKSNFLL--LLNNYRDIHKKYST---LQSKY-TDLEKSVNLKASYCQLKAQGQ--CGDCVCRDDLTLTKKYYCDCRNQSPQRDCLAHRQNGMKIDG-YYTVTMNGYRTTLVYCDQTTLGGGWTVIQRRMDGSVNFYRTWEQYKIGFGQLHH----EFWQGNEEIHVLCAQALYPKGSEAMIQIKVQGLDY---LFTNQYSHFEVGSERSNYLLQ----VSGPSGHW----------HPEYFTRYQNKVEFSTWDKDNDGATSYKCAYTHQFSGWWINGSKNSCTNDEAASHNLNGPYDKYRTKNWY-NRITFFSQNQPWFSEIKVRRKI 1072
SE+K + + ++ S N D LKS +L ++ I S+ LQ Y ++ +K VNLK QL+AQ Q C D V D+T +DC G K G Y+ + + LVYC+ G GWTV Q+R+DGSV+F + W QYK GFG L EFW GNE+IH++ Q+ P ++V+ D+ T Y+ F+VG E Y L G +G ++FT + N ++FSTWD DND CA SGWW+N N + G Y K T N Y N I + + W+S K KI
Sbjct: 81 SEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQEPCKDTVQIHDIT--------------GKDCQDIANKGAKQSGLYFIKPLKANQQFLVYCEIDGSGNGWTVFQKRLDGSVDFKKNWIQYKEGFGHLSPTGTTEFWLGNEKIHLISTQSAIPYA------LRVELEDWNGRTSTADYAMFKVGPEADKYRLTYAYFAGGDAGDAFDGFDFGDDPSDKFFTSH-NGMQFSTWDNDNDKFEG-NCA-EQDGSGWWMNKCHAGHLN---GVYYQGGTYSKASTPNGYDNGIIWATWKTRWYSMKKTTMKI 412
The following BLAST results are available for this feature:
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