TCONS_00010824 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010824
Unique NameTCONS_00010824
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length992

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010824 ID=TCONS_00010824|Name=TCONS_00010824|organism=Clytia hemisphaerica|type=transcript|length=992bp
AATTGAATCAaaatggacttgaaatttgttATTATAGTTTTAACTCTATG
TTTGGTCAAAGCTGGAAACAGCTTTGACGAGTTAGAGATATTGAAAAACA
ATGTCCAAACTCTTATCAGCAATTTTAAGACCATGCAGACGAATTACAAC
AAGTTGCAATCTAAATACGTGAGACTGGAAGAGGTACAACAACTCAATTC
CCAATATTGTAAATACAGTGTTGATGGTTTTTGTGGACCCTGTATTTGTA
AGGATGATTTCAGTCTTCCCAAGAAATATTATTGTGATTGCCGGAACCAA
TCACCACAACGCGATTGCCTTGCACATCGACATAACGGAATGTCAATCGA
TGGTTACTATACAGTTACAATGAATGGATATCGAATGACTCAAGTTTATT
GTGATCAAACAACTTCAGGAGGCGGTTGGACCGTCATTCAAAGACGTATG
GATGGATCGGTCAATTTCTTTCGTGAATGGAAAGATTATCGCCGAGGCTT
TGGTCATCTTCACCACGAATTTTGGCAAGGAAATGATGACATACACCTTC
TTACTAAACAAGCAATGAATAATTCTGAATTGATGATTCAAATGAAGATC
CAACATTTAAATATCCTTTTTACCAACCGCTATTCACATTTCAATGTCCT
CGATGAAGAGAATCGATATCAATTAGAAGTTGCCGGACCCTCTGGTAATC
TGAACCCAAAATTCTTTACACAATTTCAACATAACCAACGATTCTCAACT
TGGGATTGGCCCCACGACGGCGCTGACCCGTTTGTCAGCTGCGCATCCAA
ACATCAGTTTGCAGGCTGGTGGATAAATGGCTCCTCTAACAATTGCACCG
GCTATGAAGCGGCTGCTCACAATTTGAACGGCCCATATGACGCGTTCAGA
ACAAGGAAATGGTATCAGAGAATAAACTATTATTTTAAATATCATCCATA
TTTTACTGAGATTAAAGTACGCCGAAAATTGTAAATTGTCAA
Run BLAST on NCBI

transcript from alignment at sc0000117:332193..333184-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010824 ID=TCONS_00010824|Name=TCONS_00010824|organism=Clytia hemisphaerica|type=transcript|length=992bp|location=Sequence derived from alignment at sc0000117:332193..333184- (Clytia hemisphaerica)
AATTGAATCAAAATGGACTTGAAATTTGTTATTATAGTTTTAACTCTATG
TTTGGTCAAAGCTGGAAACAGCTTTGACGAGTTAGAGATATTGAAAAACA
ATGTCCAAACTCTTATCAGCAATTTTAAGACCATGCAGACGAATTACAAC
AAGTTGCAATCTAAATACGTGAGACTGGAAGAGGTACAACAACTCAATTC
CCAATATTGTAAATACAGTGTTGATGGTTTTTGTGGACCCTGTATTTGTA
AGGATGATTTCAGTCTTCCCAAGAAATATTATTGTGATTGCCGGAACCAA
TCACCACAACGCGATTGCCTTGCACATCGACATAACGGAATGTCAATCGA
TGGTTACTATACAGTTACAATGAATGGATATCGAATGACTCAAGTTTATT
GTGATCAAACAACTTCAGGAGGCGGTTGGACCGTCATTCAAAGACGTATG
GATGGATCGGTCAATTTCTTTCGTGAATGGAAAGATTATCGCCGAGGCTT
TGGTCATCTTCACCACGAATTTTGGCAAGGAAATGATGACATACACCTTC
TTACTAAACAAGCAATGAATAATTCTGAATTGATGATTCAAATGAAGATC
CAACATTTAAATATCCTTTTTACCAACCGCTATTCACATTTCAATGTCCT
CGATGAAGAGAATCGATATCAATTAGAAGTTGCCGGACCCTCTGGTAATC
TGAACCCAAAATTCTTTACACAATTTCAACATAACCAACGATTCTCAACT
TGGGATTGGCCCCACGACGGCGCTGACCCGTTTGTCAGCTGCGCATCCAA
ACATCAGTTTGCAGGCTGGTGGATAAATGGCTCCTCTAACAATTGCACCG
GCTATGAAGCGGCTGCTCACAATTTGAACGGCCCATATGACGCGTTCAGA
ACAAGGAAATGGTATCAGAGAATAAACTATTATTTTAAATATCATCCATA
TTTTACTGAGATTAAAGTACGCCGAAAATTGTAAATTGTCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006072XLOC_006072Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010824-exon-sc0000117-1575043694:332193..333184TCONS_00010824-exon-sc0000117-1575043694:332193..333184Clytia hemisphaericaexon
TCONS_00010824-exon-sc0000117-1510915933:332193..333184TCONS_00010824-exon-sc0000117-1510915933:332193..333184Clytia hemisphaericaexon
TCONS_00010824-exon-sc0000117-1491911889:332193..333184TCONS_00010824-exon-sc0000117-1491911889:332193..333184Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000117supercontigsc0000117:332193..333184 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.04531	0.0883688	0	0.238375	0	0.0482845	0	0	0	0	0.18362	0	8.65212	1.93172	1.26218	1.96109	0.108153	0.124314	25.4676	15.1522	0.413166	0.664994	0.664538	0.907477	0.556218	0.536177	0.144008	0.0668066	2.08289	2.84484
Blast
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BLAST of TCONS_00010824 vs. Swiss-Prot (Human)
Match: TENR (Tenascin-R OS=Homo sapiens GN=TNR PE=1 SV=3)

HSP 1 Score: 129.798 bits (325), Expect = 1.796e-32
Identity = 85/229 (37.12%), Postives = 116/229 (50.66%), Query Frame = 1 
Query:  304 PQRDCLAHRHNGMSIDGYYTVTMNG--YRMTQVYCDQTTSGGGWTVIQRRMDGSVNFFREWKDYRRGFGHLHHEFWQGNDDIHLLTKQAMNNSELMIQMKIQHLNILFTNRYSHFNVLDEENRYQLEVAGPSGNLNPKFFTQFQHNQRFSTWDWPHDGADPFVSCASKHQFAGWWINGSSNNCTGYEAAAHNLNGPYDAFRTRKWYQRINYY-FKYHPY---FTEIKVR 972
            PQ DC  H  NG ++ G Y + +NG   +  QVYCD TT GGGW V QRR +G  +FFR+W DYR GFG++  EFW G D+IH +T Q     EL + M+        +  Y  F+V D  N Y+L +   +G         +   + FST D  +D A    +CA  ++ A W+      NC        NLNG Y   R     Q IN+Y +K H +   F E+K+R
Sbjct: 1135 PQ-DCAQHLMNGDTLSGVYPIFLNGELSQKLQVYCDMTTDGGGWIVFQRRQNGQTDFFRKWADYRVGFGNVEDEFWLGLDNIHRITSQG--RYELRVDMRDGQEAAFAS--YDRFSVEDSRNLYKLRIGSYNGTAGDSL--SYHQGRPFSTEDRDNDVA--VTNCAMSYKGAWWY-----KNC-----HRTNLNGKYGESRHS---QGINWYHWKGHEFSIPFVEMKMR 1341
The following BLAST results are available for this feature:
BLAST of TCONS_00010824 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TENR1.796e-3237.12Tenascin-R OS=Homo sapiens GN=TNR PE=1 SV=3[more]
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