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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010816 ID=TCONS_00010816|Name=TCONS_00010816|organism=Clytia hemisphaerica|type=transcript|length=1902bpRun BLAST on NCBI protein sequence of TCONS_00010816-protein >TCONS_00010816-protein ID=TCONS_00010816-protein|Name=TCONS_00010816-protein|organism=Clytia hemisphaerica|type=polypeptide|length=440bp MSEIQQSVNDSISELRNDATKNSSDSKKRSRSRSRDRDRRRRSRSRSRDRRun BLAST on NCBI transcript from alignment at sc0000117:68645..83168- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00010816 ID=TCONS_00010816|Name=TCONS_00010816|organism=Clytia hemisphaerica|type=transcript|length=14524bp|location=Sequence derived from alignment at sc0000117:68645..83168- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000117:68645..83168- >TCONS_00010816 ID=TCONS_00010816|Name=TCONS_00010816|organism=Clytia hemisphaerica|type=CDS|length=17199bp|location=Sequence derived from alignment at sc0000117:68645..83168- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00010816 vs. Swiss-Prot (Human)
Match: U2AF2 (Splicing factor U2AF 65 kDa subunit OS=Homo sapiens GN=U2AF2 PE=1 SV=4) HSP 1 Score: 441.425 bits (1134), Expect = 4.207e-148 Identity = 236/399 (59.15%), Postives = 297/399 (74.44%), Query Frame = 1
Query: 430 ISKPSRPKRQTL---WDKAPKGYEDITPVQFKSMRAAGQVE----MPT--PLSGGVIPATALPQGAQMTMQARRLYCGNLPFGITEDLMIDFFNAKMRESDLARNSGNPVLACQINLEKNFAFLEFRSVEETTLAMAFDGIILQGQALKIRRPKDYHPIPGITETQQTHIPGVVSTVVPDTENKVFIGGLPNYLNEDQVKELLSAFGELRAFNLVKDSATGLSKGYAFCEYVDIGITDVAIAGMNGMQLGDKKLVVQRASVGSKS------------MPAQLTIPGFDFSKEIQ----STNVLCLMNMITPEELMXXXXXXXXXXXXXXXCSKFGRIRSLQIPRPSQEHQVSGVGKIFIEYATPNEAKAASEALAGRKFASRVVVTSYYDPDKYYRSEL 1551
I P K++ + WD P G+E ITP+Q+K+M+AAGQ+ +PT P V P G+QMT QARRLY GN+PFGITE+ M+DFFNA+MR L + GNPVLA QIN +KNFAFLEFRSV+ETT AMAFDGII QGQ+LKIRRP DY P+PG++E ++PGVVSTVVPD+ +K+FIGGLPNYLN+DQVKELL++FG L+AFNLVKDSATGLSKGYAFCEYVDI +TD AIAG+NGMQLGDKKL+VQRASVG+K+ P L +PG S ++Q T VLCLMNM+ PEEL+DDE+Y+EI +D+R+ECSK+G ++S++IPRP +V G GKIF+E+ + + + A + L GRKFA+RVVVT Y DPD Y+R +
Sbjct: 77 IRSPRHEKKKKVRKYWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATLVSPPSTINQTPVTLQVPGL-MSSQVQMGGHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYHRRDF 474 The following BLAST results are available for this feature:
BLAST of TCONS_00010816 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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