TCONS_00010815 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010815
Unique NameTCONS_00010815
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length783

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010815 ID=TCONS_00010815|Name=TCONS_00010815|organism=Clytia hemisphaerica|type=transcript|length=783bp
GAATTTATAAAATTACATACAAAATAAAACTTATTTTGTCAAATAAATAT
GGAAAATTATTCTGCCAATCCAGACTTGATGCGATATTTGCAAGGAGAAA
TCTCTTTTGATACATGGCTTGAGCAACAGGGTAATGAAGATGAAGCTGAA
AATCATCACGTACAGCAAAGGGTTGGTACCACACCCAGTGGGAGACCCCA
AGCAATGTCCCAAGGAGTAAGCGAGGAATCAGCTTCAGTGTTTTCATCTT
GGGTTGATGCTTTTACTTCTGGTGCAGCTTCTGGTGGTGATGGTGGTGGT
GGTGATGAGCAAGTGACATTACCTGGAACCAGCAAGCAGTTTTTCAACAA
CACGTCAGGCGGAGTTGTTGAAGAAGACAGTGACTATGAAGAAGATGATG
GGACCGAAACGGAAGAGGAGGTTCTACAAATAGgtAAAGCGAATAAATCT
GAAAAAGCAAAACGTCAACTCATAACGTTCGATTTACAAATGCCATCATT
TGAAGACCTGCCAACACCTTTGGAAAGTGAGTTACCGTCAACAGTGACTT
TGACAATCACATGGCAAGAGTTACGACCCATTATTAAAGAGCTGGCTGTC
ATTATACCAACCTCTACCATAAATAAGAGACGCTCAAAAATGAGGCATCG
AAGATTAACAGAAGATTCGACAGgTGACAATGTCCCAGATATCATGAAAG
ATTTCcaagattttctttaaattcttaGGTGCCAATGTCCCAGATATCAT
GAAAGATTTCcaagattttctttaaattcttaG
Run BLAST on NCBI

transcript from alignment at sc0000117:45520..49391-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010815 ID=TCONS_00010815|Name=TCONS_00010815|organism=Clytia hemisphaerica|type=transcript|length=3872bp|location=Sequence derived from alignment at sc0000117:45520..49391- (Clytia hemisphaerica)
GAATTTATAAAATTACATACAAAATAAAACTTATTTTGTCAAATAAATAT
GGAAAATTATTCTGCCAATCCAGACTTGATGCGATATTTGCAAGGAGAAA
TCTCTTTTGATACATGGCTTGAGCAACAGGGTAATGAAGATGAAGCTGAA
AATCATCACGTACAGCAAAGGGTTGGTACCACACCCAGTGGGAGACCCCA
AGCAATGTCCCAAGGAGTAAGCGAGGAATCAGCTTCAGTGTTTTCATCTT
GGGTTGATGCTTTTACTTCTGGTGCAGCTTCTGGTGGTGATGGTGGTGGT
GGTGATGAGCAAGTGGTATATTTTTTCATTGTTTACAGTGTTTAAAGCTC
TACTGAGTCCCGGGGGGGTACTAGGGCAAGATGGGTTACGGGGATGCTCC
GCTGGTCAGGGTACCTTTTTTAACCTCCACGAGTCCCAGGTAGGGTCGCA
GAAACACCAAAATGGAAAAATCAGTCCCTCGTAGGGTGCCTTTTTTTGGA
AGATTTGGGGAAAAAGTAGAAAATTTGAGAAAATTTTGGAATTTCAGTCC
CATTCAGGGTCACTTTTTTCGCAAATTTCGAGTCCCACGTAGGGTCCATT
TTTCGAACCTCAGCGGAGCACCCCCGTCGGTCGACAAGGGTAGTACCCCC
CCCGGGTACTGAGTCAACTACTACAATATCGAATTTTAGTTAATTCCTCG
TTTTTAGCAATTTAAAGTTCGGGCGAGAAAGTCGCTTTTGGGCTAATTGA
TAAATTTATTTGAATATTTCAATTCGCGATGATTTTATAGACTTCCAGGC
TATATTCTGAGCCCTATTTGACCATTCTTGGACTTTTGGATCCTCAGATC
CTAAGGTTCGAAGTCTTAAGTCTAGCGTTAAAACTCTACCCTTCCAACCT
AATTTAGAGCGCTTCCAAATCGTTTGTGGCTGTAAGATTTCGTGTGAATT
TCCCTTTTTTTCAAATATTATAACTTTGATTGTAAGGTCTCGATCACACA
ACACAATTTTTTGTTCTAGACATTACCTGGAACCAGCAAGCAGTTTTTCA
ACAACACGTCAGGCGGAGTTGTTGAAGAAGACAGTGACTATGAAGAAGAT
GATGGGACCGAAACGGAAGAGGAGGTTCTACAAATAGGTCAGCTTTTGTT
TTATTTTCACGCTTTTTTATAAGAACATAAGGCTCCGATGGCCAAAATGT
TAAGAACAAGTTAAGAACATTTTCAGGCTTTGTGGACTCAAAAATAGCCT
ATTTCTTAAGAAAATGGTCGAGAATACACACAAAATGGTCAAAATAAGAA
CATGTTAAGAAGGCTTCAAAAATGTTCGTATAAAAAATGTGTACTCTTTT
TTACAGTGGAGTCTCTTTAACTCGATCTTTTATAACTCCTTAAATTGACA
TAATGTCACTCCCCAAGTGGATTCAAGTGCCTGAAAATTGGACCGGTCTT
GGAACCGTATTACAAGCGGTCTAGTAGTGGTCCAATTTTGTTTTGGATCA
GCTTAAAACCTTCTAGAAAATCTGATTTCGAACAGTCCTGACCGTTCGTA
GACGCTCTTGGTCGATCGCTCGACCGGTCCTGGCCGCTCGTTATATAGAA
GGATGTCGACTGGACGCATCAAAATGGCTGCTAGATGCACTTGACTCGTA
GCAATCTTTTGGTAGTTTTACTGGTCGTTTACCGACCCTCAGAAGACCGC
CAAAAGACCGGTCCGATTTTCAGGTACTCACTTGGGAGTCACATAATTGT
GCATAAAAATAATAATGAAAAGGCAAAATAAGGTTCCCATTTATTTCGTT
AAAGTGACCTGTGTTATAAGTTATTTAATAAATACACCCCCTTGAATATT
ATGCCTCTCCTAAACACCAATAAAAAACGGTGTTTTAAATTTCCAACATT
TTATTTGCCCAGATCTAAGGGGTGCCCTACTTTCGCACGTGGATCTAATT
CTCCTGCTTTTCACGTCAAAAAAAATTTCTTTGAAATGGGTGGATTCCCC
CTGGAAAAAGGCAAAACACTCCCTTAGACACCCTGGAAATGTTCGTCCAC
CCTTTATATGGATATAAAATGGAATGGCTCATTGTTAATTCAATAGCACT
TCGCGTCTCACACGTCAGCACACGTCATAATTATTTCAACTAGAAATTTG
TACGAGTTCCCATTCCACAGTTCATTTCGAAATGATTGGAAAACCGTGAG
AGTTACTACCTTTCTTTTGATATTGTAAGTTTTCAACGTGAAAGAGCAAT
TAACGCAAAGTAGGATGGGGTCGCAACTCGTACAAACGAATTAATTTGTG
CAGATCTGTTACTATTTTTAGATTCGGTGCGTTGTGCTATTATGACCTGG
GGGGGGGGGCAGTCAGGCAAATTGACCGACTGGTATGTGCGGTGGTTAAG
GGTATGTTTTTCAAAATATCAGAAATGCACTGTATGTGTGGAAATTTCAG
CAAATCTAGGAAAAATTGCAAATTTTTACTCGAAAATCTTGATTTTTTTG
CTCTAAAAGAGTTTAAAATTTGAAAAATTGGGTATGTGTATGAATTTCAC
CGTTTTTTCTGCACTGTAAGGGTGCGATTCTAAAAGCCAATTTTTTTGCC
GCACATACCGTCAGTTAGTAAACCCACTGCCCCCCGGGTATTATAACTAA
AGTTTCCTCCAAGTTTTATTTTCTTTTTAGGTAAAGCGAATAAATCTGAA
AAAGCAAAACGTCAACTCATAACGTTCGATTTACAAATGCCATCATTTGA
AGACCTGCCAACACCTTTGGAAAGTGAGTTACCGTCAACAGTGACTTTGA
CAATCACATGGCAAGAGTTACGACCCATTATTAAAGAGCTGGCTGTCATT
ATACCAACCTCTACCATAAATAAGAGACGCTCAAAAATGAGGCATCGAAG
ATTAACAGAAGATTCGACAGGTACGGTTATTTTTTTATTGGATTTTTCTT
TTAAAGGAGTGATATCATTTGCTTACTCATCAATTTTAATTCACAAGCTT
TTTCACATTGAACTGACACGGATATGGAGCAAGATTGATCAGAAAGAGGA
AAAGAAGAGCATTTTTTGCTTATATCAGCATAATATAACAATAGGAGGAC
ACTGTCCTGATATGAAATATTTGTCTGACATGAAACGGGAACGCTTATGT
AAAAACAAAACCTTCAATGTGTATGTCGGATGGAAATGGTTATTAACAGG
TGTGTGGCATTGGGTTGATGGATGTGTACTAAGTGGCAGTTTTTACACTA
GGCTTGGATAGTGGTAGTATTCGAGTATTTTAAATTATTTCCATCAACAA
TCTTTAATTGATTTTGTCGTATATATTTTTTCTCAAGCAGTCGCTCAAGC
AGTCGCAAGATTTTCTTTAAATTTTCAGATATCGATCATCAGATATCATG
AAAGATTTCCAAGATTTTCTTTAAATTCTTAGGTGACAATGTCCCAGATA
TCATGAAAGATTTCCAGGATTTTCTTTAAATTCTTAGGCGACAATGTCCC
AGATATCATGAAAGATTTCCAGGATTTTCTTTAACTTTTCAGGTGACAAT
GTCCCAGATATCATGAAAGATTTCCAGGATTTTCTTTAAATTTTCAGGTG
ACAATGTCCCAGATATCATGAAAGATTTCCAGGATTTTCGTTAAATTCTT
AGGCGACAATGTCCCAGATATCATGAAAGATTTCCAGGATTTTCTTTAAA
TTTTCAGGTGACAATGTCCCAGATATCATGAAAGATTTCCAGGATTTTCT
TTAAATTTTCAGGTGACAATGTCCCAGATATCATGAAAGATTTCCAAGAT
TTTCTTTAAATTCTTAGGTGCCAATGTCCCAGATATCATGAAAGATTTCC
AAGATTTTCTTTAAATTCTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006066XLOC_006066Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010815-exon-sc0000117-1575043694:49077..49391TCONS_00010815-exon-sc0000117-1575043694:49077..49391Clytia hemisphaericaexon
TCONS_00010815-exon-sc0000117-1575043694:48255..48372TCONS_00010815-exon-sc0000117-1575043694:48255..48372Clytia hemisphaericaexon
TCONS_00010815-exon-sc0000117-1575043694:46472..46711TCONS_00010815-exon-sc0000117-1575043694:46472..46711Clytia hemisphaericaexon
TCONS_00010815-exon-sc0000117-1575043694:45520..45629TCONS_00010815-exon-sc0000117-1575043694:45520..45629Clytia hemisphaericaexon
TCONS_00010815-exon-sc0000117-1510915933:49077..49391TCONS_00010815-exon-sc0000117-1510915933:49077..49391Clytia hemisphaericaexon
TCONS_00010815-exon-sc0000117-1510915933:48255..48372TCONS_00010815-exon-sc0000117-1510915933:48255..48372Clytia hemisphaericaexon
TCONS_00010815-exon-sc0000117-1510915933:46472..46711TCONS_00010815-exon-sc0000117-1510915933:46472..46711Clytia hemisphaericaexon
TCONS_00010815-exon-sc0000117-1510915933:45520..45629TCONS_00010815-exon-sc0000117-1510915933:45520..45629Clytia hemisphaericaexon
TCONS_00010815-exon-sc0000117-1491911889:49077..49391TCONS_00010815-exon-sc0000117-1491911889:49077..49391Clytia hemisphaericaexon
TCONS_00010815-exon-sc0000117-1491911889:48255..48372TCONS_00010815-exon-sc0000117-1491911889:48255..48372Clytia hemisphaericaexon
TCONS_00010815-exon-sc0000117-1491911889:46472..46711TCONS_00010815-exon-sc0000117-1491911889:46472..46711Clytia hemisphaericaexon
TCONS_00010815-exon-sc0000117-1491911889:45520..45629TCONS_00010815-exon-sc0000117-1491911889:45520..45629Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000117supercontigsc0000117:45520..49391 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.401229	0.291378	0.922269	0.419937	0	0.585355	0.657723	0.181359	0.334137	0.242604	0.382574	0.653449	0.633852	0.292025	0.506014	0.420135	0.877442	0.691941	0	0	0	0	0.363764	0.455526	0.805058	1.0043	0.150161	0	0.219231	0.539124
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010815 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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