TCONS_00010814 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010814
Unique NameTCONS_00010814
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length683

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010814 ID=TCONS_00010814|Name=TCONS_00010814|organism=Clytia hemisphaerica|type=transcript|length=683bp
GAATTTATAAAATTACATACAAAATAAAACTTATTTTGTCAAATAAATAT
GGAAAATTATTCTGCCAATCCAGACTTGATGCGATATTTGCAAGGAGAAA
TCTCTTTTGATACATGGCTTGAGCAACAGGGTAATGAAGATGAAGCTGAA
AATCATCACGTACAGCAAAGGGTTGGTACCACACCCAGTGGGAGACCCCA
AGCAATGTCCCAAGGAGTAAGCGAGGAATCAGCTTCAGTGTTTTCATCTT
GGGTTGATGCTTTTACTTCTGGTGCAGCTTCTGGTGGTGATGGTGGTGGT
GGTGATGAGCAAGTGACATTACCTGGAACCAGCAAGCAGTTTTTCAACAA
CACGTCAGGCGGAGTTGTTGAAGAAGACAGTGACTATGAAGAAGATGATG
GGACCGAAACGGAAGAGGAGGTTCTACAAATAGgtAAAGCGAATAAATCT
GAAAAAGCAAAACGTCAACTCATAACGTTCGATTTACAAATGCCATCATT
TGAAGACCTGCCAACACCTTTGGAAAGTGAGTTACCGTCAACAGTGACTT
TGACAATCACATGGCAAGAGTTACGACCCATTATTAAAGAGCTGGCTGTC
ATTATACCAACCTCTACCATAAATAAGAGACGCTCAAAAATGAGGCATCG
AAGATTAACAGAAGATTCGACAGGTGACAATGT
Run BLAST on NCBI

transcript from alignment at sc0000117:44565..49391-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010814 ID=TCONS_00010814|Name=TCONS_00010814|organism=Clytia hemisphaerica|type=transcript|length=4827bp|location=Sequence derived from alignment at sc0000117:44565..49391- (Clytia hemisphaerica)
GAATTTATAAAATTACATACAAAATAAAACTTATTTTGTCAAATAAATAT
GGAAAATTATTCTGCCAATCCAGACTTGATGCGATATTTGCAAGGAGAAA
TCTCTTTTGATACATGGCTTGAGCAACAGGGTAATGAAGATGAAGCTGAA
AATCATCACGTACAGCAAAGGGTTGGTACCACACCCAGTGGGAGACCCCA
AGCAATGTCCCAAGGAGTAAGCGAGGAATCAGCTTCAGTGTTTTCATCTT
GGGTTGATGCTTTTACTTCTGGTGCAGCTTCTGGTGGTGATGGTGGTGGT
GGTGATGAGCAAGTGGTATATTTTTTCATTGTTTACAGTGTTTAAAGCTC
TACTGAGTCCCGGGGGGGTACTAGGGCAAGATGGGTTACGGGGATGCTCC
GCTGGTCAGGGTACCTTTTTTAACCTCCACGAGTCCCAGGTAGGGTCGCA
GAAACACCAAAATGGAAAAATCAGTCCCTCGTAGGGTGCCTTTTTTTGGA
AGATTTGGGGAAAAAGTAGAAAATTTGAGAAAATTTTGGAATTTCAGTCC
CATTCAGGGTCACTTTTTTCGCAAATTTCGAGTCCCACGTAGGGTCCATT
TTTCGAACCTCAGCGGAGCACCCCCGTCGGTCGACAAGGGTAGTACCCCC
CCCGGGTACTGAGTCAACTACTACAATATCGAATTTTAGTTAATTCCTCG
TTTTTAGCAATTTAAAGTTCGGGCGAGAAAGTCGCTTTTGGGCTAATTGA
TAAATTTATTTGAATATTTCAATTCGCGATGATTTTATAGACTTCCAGGC
TATATTCTGAGCCCTATTTGACCATTCTTGGACTTTTGGATCCTCAGATC
CTAAGGTTCGAAGTCTTAAGTCTAGCGTTAAAACTCTACCCTTCCAACCT
AATTTAGAGCGCTTCCAAATCGTTTGTGGCTGTAAGATTTCGTGTGAATT
TCCCTTTTTTTCAAATATTATAACTTTGATTGTAAGGTCTCGATCACACA
ACACAATTTTTTGTTCTAGACATTACCTGGAACCAGCAAGCAGTTTTTCA
ACAACACGTCAGGCGGAGTTGTTGAAGAAGACAGTGACTATGAAGAAGAT
GATGGGACCGAAACGGAAGAGGAGGTTCTACAAATAGGTCAGCTTTTGTT
TTATTTTCACGCTTTTTTATAAGAACATAAGGCTCCGATGGCCAAAATGT
TAAGAACAAGTTAAGAACATTTTCAGGCTTTGTGGACTCAAAAATAGCCT
ATTTCTTAAGAAAATGGTCGAGAATACACACAAAATGGTCAAAATAAGAA
CATGTTAAGAAGGCTTCAAAAATGTTCGTATAAAAAATGTGTACTCTTTT
TTACAGTGGAGTCTCTTTAACTCGATCTTTTATAACTCCTTAAATTGACA
TAATGTCACTCCCCAAGTGGATTCAAGTGCCTGAAAATTGGACCGGTCTT
GGAACCGTATTACAAGCGGTCTAGTAGTGGTCCAATTTTGTTTTGGATCA
GCTTAAAACCTTCTAGAAAATCTGATTTCGAACAGTCCTGACCGTTCGTA
GACGCTCTTGGTCGATCGCTCGACCGGTCCTGGCCGCTCGTTATATAGAA
GGATGTCGACTGGACGCATCAAAATGGCTGCTAGATGCACTTGACTCGTA
GCAATCTTTTGGTAGTTTTACTGGTCGTTTACCGACCCTCAGAAGACCGC
CAAAAGACCGGTCCGATTTTCAGGTACTCACTTGGGAGTCACATAATTGT
GCATAAAAATAATAATGAAAAGGCAAAATAAGGTTCCCATTTATTTCGTT
AAAGTGACCTGTGTTATAAGTTATTTAATAAATACACCCCCTTGAATATT
ATGCCTCTCCTAAACACCAATAAAAAACGGTGTTTTAAATTTCCAACATT
TTATTTGCCCAGATCTAAGGGGTGCCCTACTTTCGCACGTGGATCTAATT
CTCCTGCTTTTCACGTCAAAAAAAATTTCTTTGAAATGGGTGGATTCCCC
CTGGAAAAAGGCAAAACACTCCCTTAGACACCCTGGAAATGTTCGTCCAC
CCTTTATATGGATATAAAATGGAATGGCTCATTGTTAATTCAATAGCACT
TCGCGTCTCACACGTCAGCACACGTCATAATTATTTCAACTAGAAATTTG
TACGAGTTCCCATTCCACAGTTCATTTCGAAATGATTGGAAAACCGTGAG
AGTTACTACCTTTCTTTTGATATTGTAAGTTTTCAACGTGAAAGAGCAAT
TAACGCAAAGTAGGATGGGGTCGCAACTCGTACAAACGAATTAATTTGTG
CAGATCTGTTACTATTTTTAGATTCGGTGCGTTGTGCTATTATGACCTGG
GGGGGGGGGCAGTCAGGCAAATTGACCGACTGGTATGTGCGGTGGTTAAG
GGTATGTTTTTCAAAATATCAGAAATGCACTGTATGTGTGGAAATTTCAG
CAAATCTAGGAAAAATTGCAAATTTTTACTCGAAAATCTTGATTTTTTTG
CTCTAAAAGAGTTTAAAATTTGAAAAATTGGGTATGTGTATGAATTTCAC
CGTTTTTTCTGCACTGTAAGGGTGCGATTCTAAAAGCCAATTTTTTTGCC
GCACATACCGTCAGTTAGTAAACCCACTGCCCCCCGGGTATTATAACTAA
AGTTTCCTCCAAGTTTTATTTTCTTTTTAGGTAAAGCGAATAAATCTGAA
AAAGCAAAACGTCAACTCATAACGTTCGATTTACAAATGCCATCATTTGA
AGACCTGCCAACACCTTTGGAAAGTGAGTTACCGTCAACAGTGACTTTGA
CAATCACATGGCAAGAGTTACGACCCATTATTAAAGAGCTGGCTGTCATT
ATACCAACCTCTACCATAAATAAGAGACGCTCAAAAATGAGGCATCGAAG
ATTAACAGAAGATTCGACAGGTACGGTTATTTTTTTATTGGATTTTTCTT
TTAAAGGAGTGATATCATTTGCTTACTCATCAATTTTAATTCACAAGCTT
TTTCACATTGAACTGACACGGATATGGAGCAAGATTGATCAGAAAGAGGA
AAAGAAGAGCATTTTTTGCTTATATCAGCATAATATAACAATAGGAGGAC
ACTGTCCTGATATGAAATATTTGTCTGACATGAAACGGGAACGCTTATGT
AAAAACAAAACCTTCAATGTGTATGTCGGATGGAAATGGTTATTAACAGG
TGTGTGGCATTGGGTTGATGGATGTGTACTAAGTGGCAGTTTTTACACTA
GGCTTGGATAGTGGTAGTATTCGAGTATTTTAAATTATTTCCATCAACAA
TCTTTAATTGATTTTGTCGTATATATTTTTTCTCAAGCAGTCGCTCAAGC
AGTCGCAAGATTTTCTTTAAATTTTCAGATATCGATCATCAGATATCATG
AAAGATTTCCAAGATTTTCTTTAAATTCTTAGGTGACAATGTCCCAGATA
TCATGAAAGATTTCCAGGATTTTCTTTAAATTCTTAGGCGACAATGTCCC
AGATATCATGAAAGATTTCCAGGATTTTCTTTAACTTTTCAGGTGACAAT
GTCCCAGATATCATGAAAGATTTCCAGGATTTTCTTTAAATTTTCAGGTG
ACAATGTCCCAGATATCATGAAAGATTTCCAGGATTTTCGTTAAATTCTT
AGGCGACAATGTCCCAGATATCATGAAAGATTTCCAGGATTTTCTTTAAA
TTTTCAGGTGACAATGTCCCAGATATCATGAAAGATTTCCAGGATTTTCT
TTAAATTTTCAGGTGACAATGTCCCAGATATCATGAAAGATTTCCAAGAT
TTTCTTTAAATTCTTAGGTGCCAATGTCCCAGATATCATGAAAGATTTCC
AAGATTTTCTTTAAATTCTTAGGTGACAATGTCCCAGATATCATGAAAGA
TTCCACAGATTTCCAAAATTTTCTTTAAATTTTCGGTGACAATGTCCCAG
ATATCATGAAAGATTTCCAAGATTTTCTTTTTAAATTCTTAGGCGACAAT
GTCCCAGATATCATGAAAGATTTCCAGGATTTTCTTTAAATTTTCAGGTG
ACAATGTCCCAGATATCATGAAAGATTTCCAAGATTTTCTTTAAATTCTT
AGGTGCCAATGTCCCAGATATCATGAAAGATTTCCAGGATTTTCTTTAAA
TTCTTAGGCGACAATGTCCCAGATATCATGAAAGATTTCCAGGATTTTCT
TTAAATTTTCAGGTGACAATGTCCCAGATATCATGAAAGATTTCCAAGAT
TTTCTTTAAACTCTTAGGTGCCAATGTCCCAGATGTCATGAAAGATTTCC
AGGATTTTCTTTAAATTCTTAGGCAAAAATGTCCCAGATATCATGAAAGA
TTTCCAGGATTTTCTTTAAATTCTTAGGCGACAATGTCCCAGATATCATG
AAAGATTTCCAGGATTTTCTTTAAATTTTCAGGTGACAATGTCCCAGATA
TCATGAAAGATTTCCAAGATTTTCTTTAAATTCTTAGGTGCCAATGTCCC
AGATATCATGAAAGATTTCCAGGATTTTCTTTAAATTCTTAGGCGACAAT
GTCCCAGATATCATGAAAGATTTCCAAGATTTTCTTTAAATTCTTAGGTG
ACAATGTCCCAGATATCATGAAAGATTTCCAAGATTTTCTTCAAATTTTT
CGGTGACAATGTCCCAGATATCATGAAAGATTTCCAAGATTTCCTTTAAA
TTCTCAGGTGACAATGTCCCAGATATCATGAAAGATTTCCAAGATTTTCT
TTAAATTCTTAGGTGACAATGTCCCAGATATCATGAAAGATTTCCAAGAT
TTTCTTTAAATTCTTAGGTGACAATGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006066XLOC_006066Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010814-exon-sc0000117-1575043694:49077..49391TCONS_00010814-exon-sc0000117-1575043694:49077..49391Clytia hemisphaericaexon
TCONS_00010814-exon-sc0000117-1575043694:48255..48372TCONS_00010814-exon-sc0000117-1575043694:48255..48372Clytia hemisphaericaexon
TCONS_00010814-exon-sc0000117-1575043694:46472..46711TCONS_00010814-exon-sc0000117-1575043694:46472..46711Clytia hemisphaericaexon
TCONS_00010814-exon-sc0000117-1575043694:44565..44574TCONS_00010814-exon-sc0000117-1575043694:44565..44574Clytia hemisphaericaexon
TCONS_00010814-exon-sc0000117-1510915933:49077..49391TCONS_00010814-exon-sc0000117-1510915933:49077..49391Clytia hemisphaericaexon
TCONS_00010814-exon-sc0000117-1510915933:48255..48372TCONS_00010814-exon-sc0000117-1510915933:48255..48372Clytia hemisphaericaexon
TCONS_00010814-exon-sc0000117-1510915933:46472..46711TCONS_00010814-exon-sc0000117-1510915933:46472..46711Clytia hemisphaericaexon
TCONS_00010814-exon-sc0000117-1510915933:44565..44574TCONS_00010814-exon-sc0000117-1510915933:44565..44574Clytia hemisphaericaexon
TCONS_00010814-exon-sc0000117-1491911889:49077..49391TCONS_00010814-exon-sc0000117-1491911889:49077..49391Clytia hemisphaericaexon
TCONS_00010814-exon-sc0000117-1491911889:48255..48372TCONS_00010814-exon-sc0000117-1491911889:48255..48372Clytia hemisphaericaexon
TCONS_00010814-exon-sc0000117-1491911889:46472..46711TCONS_00010814-exon-sc0000117-1491911889:46472..46711Clytia hemisphaericaexon
TCONS_00010814-exon-sc0000117-1491911889:44565..44574TCONS_00010814-exon-sc0000117-1491911889:44565..44574Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000117supercontigsc0000117:44565..49391 -
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010814 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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