TCONS_00010812 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010812
Unique NameTCONS_00010812
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length652

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010812 ID=TCONS_00010812|Name=TCONS_00010812|organism=Clytia hemisphaerica|type=transcript|length=652bp
CAACTTATAGTTACAGCTAAAAGATCAAACTTGTTTCGAAGTTCTTCAAA
GACAATCTTCCAACAACCATGGCTCAACAAGAAACTGGATCCAAATACGC
CGTCAAACTTAAACCTGATTTTGATAATCCAAAATGGATCAACCGTCATA
GATTTATGTTCAACTTTTTGGACATCAACGGTAACGGAAAAATCACTTTG
GATGAAATTGTCTCCAAAGCTTCGGATGATATTTGCGCCAAATTGAACGC
ATCAACAGAACAAACCCAACGCCATCAAGATGCTGTTGAAGCTTTCTTCA
AAGCCATTGGTATGGATTATGGTAAAGAAGTGGAATTCCCAGAATTCCTT
GAAGGATGGAAACGACTTGCTACCAACGATTTGAAATTGTGGTCTCAAAA
CAAGACCACCTTGATTCGCCGATGGGGAGATGTTGTGTTCGACATTTTTG
ATAAAGATGGAAGCGGTACAATCAGTTTGGACGAATGGAAGGCTTATGGA
AGAGTCTCTGGAATCTGTGCATCAGACGCAGACGCCGAGCAGACCTTCAA
ACATTGCGATTTGGACAACAGTGGCAAACTTGATGTTGATGAGATGACCA
GACAACATTTGGGATTCTGGTACACCTTGGATCCACAAGCTGATGGTCTC
TA
Run BLAST on NCBI

protein sequence of TCONS_00010812-protein

>TCONS_00010812-protein ID=TCONS_00010812-protein|Name=TCONS_00010812-protein|organism=Clytia hemisphaerica|type=polypeptide|length=194bp
MAQQETGSKYAVKLKPDFDNPKWINRHRFMFNFLDINGNGKITLDEIVSK
ASDDICAKLNASTEQTQRHQDAVEAFFKAIGMDYGKEVEFPEFLEGWKRL
ATNDLKLWSQNKTTLIRRWGDVVFDIFDKDGSGTISLDEWKAYGRVSGIC
ASDADAEQTFKHCDLDNSGKLDVDEMTRQHLGFWYTLDPQADGL
Run BLAST on NCBI

transcript from alignment at sc0000117:31016..31727-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010812 ID=TCONS_00010812|Name=TCONS_00010812|organism=Clytia hemisphaerica|type=transcript|length=712bp|location=Sequence derived from alignment at sc0000117:31016..31727- (Clytia hemisphaerica)
CAACTTATAGTTACAGCTAAAAGATCAAACTTGTTTCGAAGTTCTTCAAA
GACAATCTTCCAACAACCATGGCTCAACAAGAAACTGGATCCAAATACGC
CGTCAAACTTAAACCTGATTTTGATAATCCAAAATGGATCAACCGTCATA
GATTTATGTTCAACTTTTTGGACATCAACGGTAACGGAAAAATCACTTTG
GATGAAATTGTCTCCAAAGCTTCGGATGATATTTGCGCCAAATTGAACGC
ATCAACAGAACAAACCCAACGCCATCAAGATGCTGTTGAAGCTTTCTTCA
AAGCCATTGGTATGGATTATGGTAAAGAAGTGGAATTCCCAGAATTCCTT
GAAGGATGGAAACGACTTGCTACCAACGATTTGAAATTGTGGTCTCAAAA
CAAGACCACCTTGATTCGCCGATGGGGAGATGTTGTGTTCGACATTTTTG
ATAAAGATGGAAGCGGTACAATCAGTTTGGACGAATGGAAGGCTTATGGA
AGAGTCTCTGGAATCTGTGCATCAGACGCAGACGCCGAGCAGACCTTCAA
ACATTGTGATTTGGACAACAGTGGCAAACTTGATGTTGATGAGATGACCA
GACAANTCAAACATTGCGATTTGGACAACAGTGGCAAACTTGATGTTGAT
GAGATGACCAGACAACATTTGGGATTCTGGTACACCTTGGATCCACAAGC
TGATGGTCTCTA

Coding sequence (CDS) from alignment at sc0000117:31016..31727-

>TCONS_00010812 ID=TCONS_00010812|Name=TCONS_00010812|organism=Clytia hemisphaerica|type=CDS|length=1164bp|location=Sequence derived from alignment at sc0000117:31016..31727- (Clytia hemisphaerica)
ATTGCGATTTGGACAACAGTGGCAAACTTGATGTTGATGAGATGACCAGA
CAACATTTGGGATTCTGGTACACCTTGGATCCACAAGCTGATGGTCTCAT
GGCTCAACAAGAAACTGGATCCAAATACGCCGTCAAACTTAAACCTGATT
TTGATAATCCAAAATGGATCAACCGTCATAGATTTATGTTCAACTTTTTG
GACATCAACGGTAACGGAAAAATCACTTTGGATGAAATTGTCTCCAAAGC
TTCGGATGATATTTGCGCCAAATTGAACGCATCAACAGAACAAACCCAAC
GCCATCAAGATGCTGTTGAAGCTTTCTTCAAAGCCATTGGTATGGATTAT
GGTAAAGAAGTGGAATTCCCAGAATTCCTTGAAGGATGGAAACGACTTGC
TACCAACGATTTGAAATTGTGGTCTCAAAACAAGACCACCTTGATTCGCC
GATGGGGAGATGTTGTGTTCGACATTTTTGATAAAGATGGAAGCGGTACA
ATCAGTTTGGACGAATGGAAGGCTTATGGAAGAGTCTCTGGAATCTGTGC
ATCAGACGCAGACGCCGAGCAGACCTTCAAACATTGCGATTTGGACAACA
GTGGCAAACTTGATGTTGATGAGATGACCAGACAACATTTGGGATTCTGG
TACACCTTGGATCCACAAGCTGATGGTCTCATGGCTCAACAAGAAACTGG
ATCCAAATACGCCGTCAAACTTAAACCTGATTTTGATAATCCAAAATGGA
TCAACCGTCATAGATTTATGTTCAACTTTTTGGACATCAACGGTAACGGA
AAAATCACTTTGGATGAAATTGTCTCCAAAGCTTCGGATGATATTTGCGC
CAAATTGAACGCATCAACAGAACAAACCCAACGCCATCAAGATGCTGTTG
AAGCTTTCTTCAAAGCCATTGGTATGGATTATGGTAAAGAAGTGGAATTC
CCAGAATTCCTTGAAGGATGGAAACGACTTGCTACCAACGATTTGAAATT
GTGGTCTCAAAACAAGACCACCTTGATTCGCCGATGGGGAGATGTTGTGT
TCGACATTTTTGATAAAGATGGAAGCGGTACAATCAGTTTGGACGAATGG
AAGGCTTATGGAAGAGTCTCTGGAATCTGTGCATCAGACGCAGACGCCGA
GCAGACCTTCAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006067XLOC_006067Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010812-proteinTCONS_00010812-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010812-exon-sc0000117-1575043694:31176..31727TCONS_00010812-exon-sc0000117-1575043694:31176..31727Clytia hemisphaericaexon
TCONS_00010812-exon-sc0000117-1575043694:31016..31115TCONS_00010812-exon-sc0000117-1575043694:31016..31115Clytia hemisphaericaexon
TCONS_00010812-exon-sc0000117-1510915933:31176..31727TCONS_00010812-exon-sc0000117-1510915933:31176..31727Clytia hemisphaericaexon
TCONS_00010812-exon-sc0000117-1510915933:31016..31115TCONS_00010812-exon-sc0000117-1510915933:31016..31115Clytia hemisphaericaexon
TCONS_00010812-exon-sc0000117-1491911889:31176..31727TCONS_00010812-exon-sc0000117-1491911889:31176..31727Clytia hemisphaericaexon
TCONS_00010812-exon-sc0000117-1491911889:31016..31115TCONS_00010812-exon-sc0000117-1491911889:31016..31115Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000117supercontigsc0000117:31016..31727 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
221.347	219.309	174.974	157.672	1.3932	0.855556	0.348849	1.14031	7.6206	3.66837	2.75958	4.23265	221.861	174.7	182.2	186.241	15.7111	22.5992	0.162753	0.850028	37.1005	27.5616	45.5144	40.8776	11.2378	9.82763	3.77623	3.53432	25.9161	34.4549
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010812 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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