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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010808 ID=TCONS_00010808|Name=TCONS_00010808|organism=Clytia hemisphaerica|type=transcript|length=813bp
ATCAATCAATAACGGTAATAGATACCCAAAATACTGAAATCCCTCATAAG
GCTTTAATAACCAGAGCCTGGAAACCAATCAAAACCAGACCTTTCCTACC
ATCTTATATCGGAAAACATCTCAAAACAACATCCAAAATATCAACCATTC
CACCGCCACCACCATGTAAACGAATCCCGGTCAGTCCATCTCAAGAAGAT
CCTCCTTGCATTGAAAACTCCAATCCACACCAACTACCAGATATCACTGA
GAATCTTAAAGTACCAAAACCTTCAGATCCATCAACGAGCAAAGACAACA
CCTTGATTGAACTCCTCTATTTGGCTATTGTTCTTCCATTAGCAATCCTG
GTCATTGGTGGTGCCATCATATTGTTTTTCCTCAGGAGACAAACAAGACA
AACATATGATGTTGCAAATGTTTGATCGAATTTATGTGATAAATCTTGTA
ATCTTGTGTTTCAACCATCCGATAGCTGATTGACTTGGTGCAGATGACAA
GAGATTCAAAGAACTTGGACCAGCCATTTACATATTATATCGATTTATTC
TTTGATTCATGTTAAGATCACTGAGTATCCAGAacaaagtttctcaatcc
cagctAAGCTAaatttttgatcggagtttttttaaaGTACCCTAACGCGG
TAGCACTACTCAAGAGCGGTATGAATGCAGCTACGGCGCCAGATATACTT
TTCCTCCAATATTTCTGATGCTGTAatgccgttagacgttaattttgaCA
CAGTAATGGCTTCTTtgagggtaccactttcaaggaaccccgatcaaaga
tggcgaatATAGC Run BLAST on NCBI protein sequence of TCONS_00010808-protein >TCONS_00010808-protein ID=TCONS_00010808-protein|Name=TCONS_00010808-protein|organism=Clytia hemisphaerica|type=polypeptide|length=140bp
QSITVIDTQNTEIPHKALITRAWKPIKTRPFLPSYIGKHLKTTSKISTIP
PPPPCKRIPVSPSQEDPPCIENSNPHQLPDITENLKVPKPSDPSTSKDNT
LIELLYLAIVLPLAILVIGGAIILFFLRRQTRQTYDVANV Run BLAST on NCBI transcript from alignment at sc0000117:560102..561145+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010808 ID=TCONS_00010808|Name=TCONS_00010808|organism=Clytia hemisphaerica|type=transcript|length=1044bp|location=Sequence derived from alignment at sc0000117:560102..561145+ (Clytia hemisphaerica)
ATCAATCAATAACGGTAATAGATACCCAAAATACTGAAATCCCTCATAAG
GCTTTAATAACCAGAGCCTGGAAACCAATCAAAACCAGACCTTTCCTACC
ATCTTATATCGGAAAACATCTCAAAACAACATCCAAAATATCAACCATTC
CACCGCCACCACCATGTAAACGAATCCCGGTCAGTCCATCTCAAGAAGAT
CCTCCTTGCATTGAAAACTCCAATCCACACCAACTACCAGATATCACTGA
GAATCTTAAAGTACCAAAACCTTCAGATCCATCAACGAGCAAAGACAACA
CCTTGATTGAACTCCTCTATTTGGCTATTGTTCTTCCATTAGCAATCCTG
GTCATTGGTGGTGCCATCATATTGTTTTTCCTCAGGAGACAAACAAGGTT
AGTATACCTTGTATTCTCAAGTGTTAAAAAGTCTTATATCAGTTTATTCT
CTTCAAAAAGACGAATGTTTTCGTTCTACGGTCTTTTTGGTTTTTTCTTT
TAGAAttcaaaatcttatttttttaccCTATTGGAGTCTTAATCAGCTTC
ATCTAAAGGATATGATTCGACTTCAGCATCAAACGTTTGCTTCTTATTTA
tgtatttttctttcttcttccaTTGCAGACAAACATATGATGTTGCAAAT
GTTTGATCGAATTTATGTGATAAATCTTGTAATCTTGTGTTTCAACCATC
CGATAGCTGATTGACTTGGTGCAGATGACAAGAGATTCAAAGAACTTGGA
CCAGCCATTTACATATTATATCGATTTATTCTTTGATTCATGTTAAGATC
ACTGAGTATCCAGAacaaagtttctcaatcccagctAAGCTAaatttttg
atcggagtttttttaaaGTACCCTAACGCGGTAGCACTACTCAAGAGCGG
TATGAATGCAGCTACGGCGCCAGATATACTTTTCCTCCAATATTTCTGAT
GCTGTAatgccgttagacgttaattttgaCACAGTAATGGCTTCTTtgag
ggtaccactttcaaggaaccccgatcaaagatggcgaatATAGC Coding sequence (CDS) from alignment at sc0000117:560102..561145+ >TCONS_00010808 ID=TCONS_00010808|Name=TCONS_00010808|organism=Clytia hemisphaerica|type=CDS|length=846bp|location=Sequence derived from alignment at sc0000117:560102..561145+ (Clytia hemisphaerica)
CAATCAATAACGGTAATAGATACCCAAAATACTGAAATCCCTCATAAGGC
TTTAATAACCAGAGCCTGGAAACCAATCAAAACCAGACCTTTCCTACCAT
CTTATATCGGAAAACATCTCAAAACAACATCCAAAATATCAACCATTCCA
CCGCCACCACCATGTAAACGAATCCCGGTCAGTCCATCTCAAGAAGATCC
TCCTTGCATTGAAAACTCCAATCCACACCAACTACCAGATATCACTGAGA
ATCTTAAAGTACCAAAACCTTCAGATCCATCAACGAGCAAAGACAACACC
TTGATTGAACTCCTCTATTTGGCTATTGTTCTTCCATTAGCAATCCTGGT
CATTGGTGGTGCCATCATATTGTTTTTCCTCAGGAGACAAACAAGACAAA
CATATGATGTTGCAAATGTTTGACAATCAATAACGGTAATAGATACCCAA
AATACTGAAATCCCTCATAAGGCTTTAATAACCAGAGCCTGGAAACCAAT
CAAAACCAGACCTTTCCTACCATCTTATATCGGAAAACATCTCAAAACAA
CATCCAAAATATCAACCATTCCACCGCCACCACCATGTAAACGAATCCCG
GTCAGTCCATCTCAAGAAGATCCTCCTTGCATTGAAAACTCCAATCCACA
CCAACTACCAGATATCACTGAGAATCTTAAAGTACCAAAACCTTCAGATC
CATCAACGAGCAAAGACAACACCTTGATTGAACTCCTCTATTTGGCTATT
GTTCTTCCATTAGCAATCCTGGTCATTGGTGGTGCCATCATATTGTTTTT
CCTCAGGAGACAAACAAGACAAACATATGATGTTGCAAATGTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010808-exon-sc0000117-1491911889:560102..560498 | TCONS_00010808-exon-sc0000117-1491911889:560102..560498 | Clytia hemisphaerica | exon |
| TCONS_00010808-exon-sc0000117-1510915933:560102..560498 | TCONS_00010808-exon-sc0000117-1510915933:560102..560498 | Clytia hemisphaerica | exon |
| TCONS_00010808-exon-sc0000117-1575043694:560102..560498 | TCONS_00010808-exon-sc0000117-1575043694:560102..560498 | Clytia hemisphaerica | exon |
| TCONS_00010808-exon-sc0000117-1491911889:560730..561145 | TCONS_00010808-exon-sc0000117-1491911889:560730..561145 | Clytia hemisphaerica | exon |
| TCONS_00010808-exon-sc0000117-1510915933:560730..561145 | TCONS_00010808-exon-sc0000117-1510915933:560730..561145 | Clytia hemisphaerica | exon |
| TCONS_00010808-exon-sc0000117-1575043694:560730..561145 | TCONS_00010808-exon-sc0000117-1575043694:560730..561145 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000117 | supercontig | sc0000117:560102..561145 + |
Blast
The following BLAST results are available for this feature:
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