TCONS_00010804 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010804
Unique NameTCONS_00010804
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2045

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010804 ID=TCONS_00010804|Name=TCONS_00010804|organism=Clytia hemisphaerica|type=transcript|length=2045bp
AAAACATATGGCTTTATCATTGGATACTTCAGTGTAAAGCAGAAGGAATA
ATGAGGCAATTAACAATCATTGCGCTTTTAATTATTGGAGGCTTAGCACT
GACTAATGCCGAGGAGGTTACAAAGAGACCAAGGGGAACAGGTGAGCCGA
AAGGTACACGCTTTCCATTGAAAACCGGAAGACCAACAGGAACCCGTGCA
CCAAGAGGATCAGGGAAACCAACTGGAACCCGTGGACCACGCCCTACTGA
AGTAGAAGACCCAAGTCGAGGATCACGAAAACCAACCGGAACCCGTGGAC
CAAAAGGATCACGAAAACCAACTGGAACCCTTGGACCACGCCCTACTGAA
GTAGAAGACCCAAGACAAGGCTCACGAAAACCAACTGGTACCCGTGGACC
AAAAGGATCACGAAAACCAACTGGTACCCGTGGACCAAAAGGATCGGGAA
AACCAACCGGAACCCGTGGACCAAAAGGATCACGAAAACCAACTGGAACT
CGTGGACCACGCCCTACTGAAGTAGAAGACCCAAGACGAGGATCACGAAA
ACCAACTGGTACCCGTGGACCAAAAGGATCACGAAAACCAACCGGAACCC
GTGGGCCAAAAGTATCACGAAAACCGACTGGTTCCCGTGGGGAAGAATAA
ATACAAACAATATTTCTTGTAAAGTATTTATATAAcgcttttaaatgaaa
attgattttgaactAAAGATGTTGTAATAATATCTAAATTCTTGAGTAAA
AAACATTCACAGCTTCCGAAATACTTGACTCTCATATTTTTTTTTAGTCT
TTTATGACTGTTCATTATTCAGAAAAATCTCTAGAAAGTCAATattccaa
tttttcattttgcaaCATGTTAAATCATGTTTTTTTACCTCGAAGTATGT
TTTATAGGTAATATTGAATGAATGGAAACGCTCTCCCCTCCTACTTAAAC
CTTTCAGTTTCACTCGCACGTCAATTGTCCACTTTTATTGTCCAGTTTAC
CTTGATCACTTCCTCAGTCTTGAATTGCCCAATGTAACGATCTGTTTTAC
ACGAAAGCACCCAAAGAGACCTGCAATTCGTAGGTAGTTTTTCACTTTAA
TCATCAGATAgtatttctttttctcttccCATAAATCATGAGTACCATGA
CCATCTTTGAATTCTAAACAAAGGTGCAGTcaatgctctctaattcgatt
ttcaagggcaATTGGATTtgcatcgaataagggagtgcATCGAATGGTAG
ACCGTTGTTTATGAGGGTTTTTTGTTGACgaccactttcaaaattatcga
ataatggagcacATAGAAATGTCGGATTAGAGAGCTTTAACTGTAATTAA
TTCTACAAGTCACGTGGTCATCCTTGTGTATTATCGTCTTTATGATGCAC
AATAGTGNGATAGCTTTAACTGTAATTAATTCTACAAGTCACGTGGTCAT
CCTTGTGTATTATCGTCTTTATGATGCACAATAGTGCCAAATGGGTATTC
TCATCATCACCTTAAATAAAGCCCAGAGTATACTGGGACGAGATTGACCT
CGTTATCTTTCACTCGTTCATCAACGATGaggactttcaatattatcgaa
taacaAAGTCAAATAGCAGAACTTCGTCTACAAGTCACATGGGCATCACT
GCTATGCGTATTATGGGCTTTCCGATGTTTCCTGTTAGTGCCAGATAATA
TTCTCCGGCGTCCAATAATAGCTTAAATAAAGCCTAGAATATACTGGGGG
ACGATGTTGACTTGGCTTATCTTTCACTCATTCATCAACGATGGGATCAG
TTTGCTGTGCCAGATTACGATGAACAGTCCCATAATAACTAATCTTCCTT
TTATACTCCTTCTTCTTCGATTTCTTGTTCTTCCTTTTCAACGTGTTAAT
AGAAATGGTAGCTTTAGGGAACAACGGTTTCGTATCTTCCGTGTCTGCAT
GGTCGTTCCCGCCACGGTCCTCATTATCATCCTCTGTGTCGGACTCCATG
CTTTCGTGACGCTTTCGTGTCATACAGCAACATCGTTTCAAACAG
Run BLAST on NCBI

transcript from alignment at sc0000117:429385..432666+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010804 ID=TCONS_00010804|Name=TCONS_00010804|organism=Clytia hemisphaerica|type=transcript|length=3282bp|location=Sequence derived from alignment at sc0000117:429385..432666+ (Clytia hemisphaerica)
AAAACATATGGCTTTATCATTGGATACTTCAGTGTAAAGCAGAAGGAATA
ATGAGGCAATTAACAATCATTGCGCTTTTAATTATTGGAGGCTTAGCACT
GACTAATGCCGAGGAGGTGAGTTAATTCATGAAACCTTAGAATTTGATAT
ATATTGAAtattacacgttgttttttaatataaacatccaaaatttttga
agtattttgaagtattaacattttgaatttcaagtctaaaattgttctta
acgcgcgttcttattttcaccattttgtgagtgtttttaTCAATCTTCCT
AAGAAATTACGTGTTTTAGAGGCCACGAAGCATtaaatgctcttaacttg
ttctcaatattttttaagtcttgtgttcttatatagttagtttttataaa
aaacgtgtacacgaACTTTCATGAAAGAATCTCTTAAATTAAACTCTTAA
GTTTTTAGTCTCCAACTCGGTAAATAAAccatacccagctggcacacaac
gtcgtttcaacgttcatctaatgttcacaacgtccatataacgttagatg
accgttgtaacaacgttgtgtgccagctgggataggGTTTTATACAAATC
CTGACGTATGAACCAAAATTTTTTGTCCGTAGGTTACAAAGAGACCAAGG
GGAACAGGTGAGCCGAAAGGTACACGCTTTCCATTGAAAACCGGAAGACC
AACAGGAACCCGTGCACCAAGAGGATCAGGGAAACCAACTGGAACCCGTG
GACCACGCCCTACTGAAGTAGAAGACCCAAGTCGAGGCACATGGAAACCA
ATTGGTACCCGTGggcaaaaaaaaacacgaaaaccGAAAGGAACCCGTGG
ACCACGCCCTACTGAAGTAGAAGACCCAAGCCGAGGATCACAAAAACCAA
CTGGTACCCGTGGACCAAAAGGATCACGAAAACCAACTGGAACCCGTGGA
CCAAAAGGATCAGAGAAACCAACTGGAACCCGTGGACCACGCCCTACTGA
AGTAGAAGACCCAAGACGAGGATCACNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG
GATCACGAAAACCAACTGGAACCCGTGGACCAAAAGGATCACGAAAACCA
ACTGGAACCCGTGGACCACGCCCTACTGAAGTAGAAGACCCAAGACGAGG
ATCACGAAAACCAACTGGTACCCGTGGACCAAAAAGATCACGAAAACCAA
CTGGTACCCGTGGACCAAAAGGATCACGAAAACCAACCGGAACCCGTGGA
CCAAAAGGATCACGAAAACCAACTGGAACCCTTGGACCACGCCCTACTGA
AGTAGAAGACCCAAGACAAGGCTCACGAAAACCAACTGGTACCCGTGGAC
CAAAAGGATCACGAAAACCAACTGGTACCCGTGGACCAAAAGGATCGGGA
AAACCAACCGGAACCCGTGGACCAAAAGGATCACGAAAACCAACTGGAAC
TCGTGGACCACGCCCTACTGAAGTAGAAGACCCAAGACGAGGCTCCCGAA
AACCAACTGGTACCCGTGGACCAAAAGGATCACGAAAACCAACTGGTACC
CGTGGACCAAAAGGATCACGAAAACCAACCGGAACCCGTGGGCCAAAAGT
ATCACGAAAACCGACTGGTTCCCGTGGGGAAGAATAAATACAAACAATAT
TTCTTGTAAAGTATTTATATAAcgcttttaaatgaaaattgattttgaac
tAAAGATGTTGTAATAATATCTAAATTCTTGAGTAAAAAACATTCACAGC
TTCCGAAATACTTGACTCTCATATTTTTTTTTAGTCTTTTATGACTGTTC
ATTATTCAGAAAAATCTCTAGAAAGTCAATattccaatttttcattttgc
aaCATGTTAAATCATGTTTTTTTACCTCGAAGTATGTTTTATAGGTAATA
TTGAATGAATGGAAACGCTCTCCCCTCCTACTTAAACCTTTCAGTTTCAC
TCGCACGTCAATTGTCCACTTTTATTGTCCAGTTTACCTTGATCACTTCC
TCAGTCTTGAATTGCCCAATGTAACGATCTGTTTTACACGAAAGCACCCA
AAGAGACCTGCAATTCGTAGGTAGTTTTTCACTTTAATCATCAGATAgta
tttctttttctcttccCATAAATCATGAGTACCATGACCATCTTTGAATT
CTAAACAAAGGTGCAGTcaatgctctctaattcgattttcaagggcaATT
GGATTtgcatcgaataagggagtgcATCGAATGGTAGACCGTTGTTTATG
AGGGTTTTTTGTTGACgaccactttcaaaattatcgaataatggagcacA
TAGAAATGTCGGATTAGAGAGCTTTAACTGTAATTAATTCTACAAGTCAC
GTGGTCATCCTTGTGTATTATCGTCTTTATGATGCACAATAGTGNGATAG
CTTTAACTGTAATTAATTCTACAAGTCACGTGGTCATCCTTGTGTATTAT
CGTCTTTATGATGCACAATAGTGCCAAATGGGTATTCTCATCATCACCTT
AAATAAAGCCCAGAGTATACTGGGACGAGATTGACCTCGTTATCTTTCAC
TCGTTCATCAACGATGaggactttcaatattatcgaataacaAAGTCAAA
TAGCAGAACTTCGTCTACAAGTCACATGGGCATCACTGCTATGCGTATTA
TGGGCTTTCCGATGTTTCCTGTTAGTGCCAGATAATATTCTCCGGCGTCC
AATAATAGCTTAAATAAAGCCTAGAATATACTGGGGGACGATGTTGACTT
GGCTTATCTTTCACTCATTCATCAACGATGGGATCAGTTTGCTGTGCCAG
ATTACGATGAACAGTCCCATAATAACTAATCTTCCTTTTATACTCCTTCT
TCTTCGATTTCTTGTTCTTCCTTTTCAACGTGTTAATAGAAATGGTAGCT
TTAGGGAACAACGGTTTCGTATCTTCCGTGTCTGCATGGTCGTTCCCGCC
ACGGTCCTCATTATCATCCTCTGTGTCGGACTCCATGCTTTCGTGACGCT
TTCGTGTCATACAGCAACATCGTTTCAAACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006061XLOC_006061Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010804-exon-sc0000117-1491911889:429385..429500TCONS_00010804-exon-sc0000117-1491911889:429385..429500Clytia hemisphaericaexon
TCONS_00010804-exon-sc0000117-1510915933:429385..429500TCONS_00010804-exon-sc0000117-1510915933:429385..429500Clytia hemisphaericaexon
TCONS_00010804-exon-sc0000117-1575043694:429385..429500TCONS_00010804-exon-sc0000117-1575043694:429385..429500Clytia hemisphaericaexon
TCONS_00010804-exon-sc0000117-1491911889:430017..430170TCONS_00010804-exon-sc0000117-1491911889:430017..430170Clytia hemisphaericaexon
TCONS_00010804-exon-sc0000117-1510915933:430017..430170TCONS_00010804-exon-sc0000117-1510915933:430017..430170Clytia hemisphaericaexon
TCONS_00010804-exon-sc0000117-1575043694:430017..430170TCONS_00010804-exon-sc0000117-1575043694:430017..430170Clytia hemisphaericaexon
TCONS_00010804-exon-sc0000117-1491911889:430856..431125TCONS_00010804-exon-sc0000117-1491911889:430856..431125Clytia hemisphaericaexon
TCONS_00010804-exon-sc0000117-1510915933:430856..431125TCONS_00010804-exon-sc0000117-1510915933:430856..431125Clytia hemisphaericaexon
TCONS_00010804-exon-sc0000117-1575043694:430856..431125TCONS_00010804-exon-sc0000117-1575043694:430856..431125Clytia hemisphaericaexon
TCONS_00010804-exon-sc0000117-1491911889:431162..432666TCONS_00010804-exon-sc0000117-1491911889:431162..432666Clytia hemisphaericaexon
TCONS_00010804-exon-sc0000117-1510915933:431162..432666TCONS_00010804-exon-sc0000117-1510915933:431162..432666Clytia hemisphaericaexon
TCONS_00010804-exon-sc0000117-1575043694:431162..432666TCONS_00010804-exon-sc0000117-1575043694:431162..432666Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000117supercontigsc0000117:429385..432666 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.395704	0	0.258481	0.122676	0	0.268971	0	0.708632	0.290003	0	0.24397	0.490909	138.406	106.768	0.478991	0.998026	0.29598	0.486143	787.051	679.688	2.71371	3.45064	4.65442	13.0515	8.58144	11.7095	0.464148	1.35455	0.640664	0.849504
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010804 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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