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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010773 ID=TCONS_00010773|Name=TCONS_00010773|organism=Clytia hemisphaerica|type=transcript|length=859bp
ATTCGATATAGTGGTCACTTGATTTGAATGTCGGATCAACGTCTAGGAAA
CACGACTTGTCATTCACTATGTGAGTAGTAGCACCACAATCAACGAGAAA
CGTATTCGAGCTAGCTTCAATGTTTGACTTTGTATCACTAGCTTTGAAAG
CAAAAGAGTGATCTTCTCCATTGATGGACGTTTTGTTTGCACTGTCCTTT
TTCTTCCTACACTTGTTAGTGTTGTGGCTTTTGTTTTTACAGATACTACA
CCACCGACCTTTACTCTTTTTGTCACAGCTGGTTGATTTGTGTCCTGGAG
TTCCACAGGAGTAACATACGATTGGTTTCCTTCCTTCCTGGGCATAGAGT
TTCATTATGGCGGAGGATTGATCAGCAGGGTTAAATTGGGTTCTTGAATT
TTCGGTTTCTTCAAAATGTCTTAatgaagttttgaatttaaTAAAATCAT
CTACATTTTCAGCTTGTGTAGTAACAGCAACAAATGCCTTATATTCATCT
GGTAATCCTTTCAATACCATGGCAATTAACAATGAGTCACTAACCTGCTC
TTTCACAGCACGTAAAGAGGTGGCTGCATTTTCAGCGCGTAACAGGTAAT
CTGTGATGGGTTCGGTATGATTTTTCTTGAGGGTAGTAAGTTCATTATAT
AGAGTGATAATTCGCGGTTTACTGCCACTAGCATAATGTTCCTTTAAAAT
ATTCCAGGCTTTTCTTCCATCATCTTGGGCTTCCCTCAATACTAGGGTTA
AAGAACGTTCATCCAAGAACTGGATTAATTCGGCGAAAGCTGTTTCGTTG
GATTCTGCAGACACTTCCTCGGTCGTTGTAAATACTTTCTTCAACTTTTT
AAGTTTCAG Run BLAST on NCBI protein sequence of TCONS_00010773-protein >TCONS_00010773-protein ID=TCONS_00010773-protein|Name=TCONS_00010773-protein|organism=Clytia hemisphaerica|type=polypeptide|length=286bp
LKLKKLKKVFTTTEEVSAESNETAFAELIQFLDERSLTLVLREAQDDGRK
AWNILKEHYASGSKPRIITLYNELTTLKKNHTEPITDYLLRAENAATSLR
AVKEQVSDSLLIAMVLKGLPDEYKAFVAVTTQAENVDDFIKFKTSLRHFE
ETENSRTQFNPADQSSAIMKLYAQEGRKPIVCYSCGTPGHKSTSCDKKSK
GRWCSICKNKSHNTNKCRKKKDSANKTSINGEDHSFAFKASDTKSNIEAS
SNTFLVDCGATTHIVNDKSCFLDVDPTFKSSDHYIE Run BLAST on NCBI transcript from alignment at sc0000109:583364..584222 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010773 ID=TCONS_00010773|Name=TCONS_00010773|organism=Clytia hemisphaerica|type=transcript|length=859bp|location=Sequence derived from alignment at sc0000109:583364..584222 (Clytia hemisphaerica)
CTGAAACTTAAAAAGTTGAAGAAAGTATTTACAACGACCGAGGAAGTGTC
TGCAGAATCCAACGAAACAGCTTTCGCCGAATTAATCCAGTTCTTGGATG
AACGTTCTTTAACCCTAGTATTGAGGGAAGCCCAAGATGATGGAAGAAAA
GCCTGGAATATTTTAAAGGAACATTATGCTAGTGGCAGTAAACCGCGAAT
TATCACTCTATATAATGAACTTACTACCCTCAAGAAAAATCATACCGAAC
CCATCACAGATTACCTGTTACGCGCTGAAAATGCAGCCACCTCTTTACGT
GCTGTGAAAGAGCAGGTTAGTGACTCATTGTTAATTGCCATGGTATTGAA
AGGATTACCAGATGAATATAAGGCATTTGTTGCTGTTACTACACAAGCTG
AAAATGTAGATGATTTTAttaaattcaaaacttcatTAAGACATTTTGAA
GAAACCGAAAATTCAAGAACCCAATTTAACCCTGCTGATCAATCCTCCGC
CATAATGAAACTCTATGCCCAGGAAGGAAGGAAACCAATCGTATGTTACT
CCTGTGGAACTCCAGGACACAAATCAACCAGCTGTGACAAAAAGAGTAAA
GGTCGGTGGTGTAGTATCTGTAAAAACAAAAGCCACAACACTAACAAGTG
TAGGAAGAAAAAGGACAGTGCAAACAAAACGTCCATCAATGGAGAAGATC
ACTCTTTTGCTTTCAAAGCTAGTGATACAAAGTCAAACATTGAAGCTAGC
TCGAATACGTTTCTCGTTGATTGTGGTGCTACTACTCACATAGTGAATGA
CAAGTCGTGTTTCCTAGACGTTGATCCGACATTCAAATCAAGTGACCACT
ATATCGAAT Coding sequence (CDS) from alignment at sc0000109:583364..584222 >TCONS_00010773 ID=TCONS_00010773|Name=TCONS_00010773|organism=Clytia hemisphaerica|type=CDS|length=858bp|location=Sequence derived from alignment at sc0000109:583364..584222 (Clytia hemisphaerica)
CTGAAACTTAAAAAGTTGAAGAAAGTATTTACAACGACCGAGGAAGTGTC
TGCAGAATCCAACGAAACAGCTTTCGCCGAATTAATCCAGTTCTTGGATG
AACGTTCTTTAACCCTAGTATTGAGGGAAGCCCAAGATGATGGAAGAAAA
GCCTGGAATATTTTAAAGGAACATTATGCTAGTGGCAGTAAACCGCGAAT
TATCACTCTATATAATGAACTTACTACCCTCAAGAAAAATCATACCGAAC
CCATCACAGATTACCTGTTACGCGCTGAAAATGCAGCCACCTCTTTACGT
GCTGTGAAAGAGCAGGTTAGTGACTCATTGTTAATTGCCATGGTATTGAA
AGGATTACCAGATGAATATAAGGCATTTGTTGCTGTTACTACACAAGCTG
AAAATGTAGATGATTTTAttaaattcaaaacttcatTAAGACATTTTGAA
GAAACCGAAAATTCAAGAACCCAATTTAACCCTGCTGATCAATCCTCCGC
CATAATGAAACTCTATGCCCAGGAAGGAAGGAAACCAATCGTATGTTACT
CCTGTGGAACTCCAGGACACAAATCAACCAGCTGTGACAAAAAGAGTAAA
GGTCGGTGGTGTAGTATCTGTAAAAACAAAAGCCACAACACTAACAAGTG
TAGGAAGAAAAAGGACAGTGCAAACAAAACGTCCATCAATGGAGAAGATC
ACTCTTTTGCTTTCAAAGCTAGTGATACAAAGTCAAACATTGAAGCTAGC
TCGAATACGTTTCTCGTTGATTGTGGTGCTACTACTCACATAGTGAATGA
CAAGTCGTGTTTCCTAGACGTTGATCCGACATTCAAATCAAGTGACCACT
ATATCGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010773-exon-sc0000109-1491911889:583364..584222 | TCONS_00010773-exon-sc0000109-1491911889:583364..584222 | Clytia hemisphaerica | exon |
| TCONS_00010773-exon-sc0000109-1510915933:583364..584222 | TCONS_00010773-exon-sc0000109-1510915933:583364..584222 | Clytia hemisphaerica | exon |
| TCONS_00010773-exon-sc0000109-1575043694:583364..584222 | TCONS_00010773-exon-sc0000109-1575043694:583364..584222 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000109 | supercontig | sc0000109:583364..584222 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001878 | Znf_CCHC |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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