TCONS_00010769 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010769
Unique NameTCONS_00010769
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length767

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010769 ID=TCONS_00010769|Name=TCONS_00010769|organism=Clytia hemisphaerica|type=transcript|length=767bp
tacttttgatgatgacaaattatattttcagaaagtagacaatcaaaaag
aaaactgaaaaaaatacaaaatacaatCTAGGCAATTTACAACAAACATT
ATTTAGGGAACAAAGTTGCCATAAAGACCATCAGCGTTGGGGTCCAAGGT
GTACCAGAATCCCAAATGTTGTCTGGTCATCTCATCAACATCAAGTTTAC
CACTGTTGTCCAAATCGCAATGTTTGAAAGTCTTCTCGGCGTCTTCGTCT
GATGGACAGATTCCGGAGATTCTTCCGTAAGCTTTCCATTCGTCCAAACT
GATCGAACCGCTTCCATCTTTATCGAAAATGTCGAAGACAGCTTCTCCCC
AGTCACGGATCAAAGATTTCTTGTTTTGAGACCAGAGTTTCAAGTCGTGT
TTGGCCAAGTTTTTCCATCCTTCAACGAACTGTGGGAATTCGACTTCTTT
TCCATAATCCATaccaattttcttgaaaaagttCTCAACAGCATCTTGAT
GACGTTTTGTTTGAGCTGGAGTAGCTTCAAGTTTAGCGCAAATATCATCT
GAAGCTTTGGAGACGATTTCATCCAAAGTGATTTTTCCGTTGCCGTTGAT
ATCCAAAAAGTTGAACATAAATTTGTGTCGGTTGACCCATTTTGGATCAT
CGAAGTTGGTCTTGAGTTTGATGGCGTATTTTGAAGCAGTGTCAGCCATG
ATGAGGAGGTTTTGAAGATTTGCTTTGAATTGCAAAAATTGATCTGCTAG
CTAAAGACAAGTTGAGC
Run BLAST on NCBI

protein sequence of TCONS_00010769-protein

>TCONS_00010769-protein ID=TCONS_00010769-protein|Name=TCONS_00010769-protein|organism=Clytia hemisphaerica|type=polypeptide|length=198bp
MADTASKYAIKLKTNFDDPKWVNRHKFMFNFLDINGNGKITLDEIVSKAS
DDICAKLEATPAQTKRHQDAVENFFKKIGMDYGKEVEFPQFVEGWKNLAK
HDLKLWSQNKKSLIRDWGEAVFDIFDKDGSGSISLDEWKAYGRISGICPS
DEDAEKTFKHCDLDNSGKLDVDEMTRQHLGFWYTLDPNADGLYGNFVP
Run BLAST on NCBI

transcript from alignment at sc0000109:558981..559747

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010769 ID=TCONS_00010769|Name=TCONS_00010769|organism=Clytia hemisphaerica|type=transcript|length=767bp|location=Sequence derived from alignment at sc0000109:558981..559747 (Clytia hemisphaerica)
GCTCAACTTGTCTTTAGCTAGCAGATCAATTTTTGCAATTCAAAGCAAAT
CTTCAAAACCTCCTCATCATGGCTGACACTGCTTCAAAATACGCCATCAA
ACTCAAGACCAACTTCGATGATCCAAAATGGGTCAACCGACACAAATTTA
TGTTCAACTTTTTGGATATCAACGGCAACGGAAAAATCACTTTGGATGAA
ATCGTCTCCAAAGCTTCAGATGATATTTGCGCTAAACTTGAAGCTACTCC
AGCTCAAACAAAACGTCATCAAGATGCTGTTGAGaactttttcaagaaaa
ttggtATGGATTATGGAAAAGAAGTCGAATTCCCACAGTTCGTTGAAGGA
TGGAAAAACTTGGCCAAACACGACTTGAAACTCTGGTCTCAAAACAAGAA
ATCTTTGATCCGTGACTGGGGAGAAGCTGTCTTCGACATTTTCGATAAAG
ATGGAAGCGGTTCGATCAGTTTGGACGAATGGAAAGCTTACGGAAGAATC
TCCGGAATCTGTCCATCAGACGAAGACGCCGAGAAGACTTTCAAACATTG
CGATTTGGACAACAGTGGTAAACTTGATGTTGATGAGATGACCAGACAAC
ATTTGGGATTCTGGTACACCTTGGACCCCAACGCTGATGGTCTTTATGGC
AACTTTGTTCCCTAAATAATGTTTGTTGTAAATTGCCTAGattgtatttt
gtatttttttcagttttctttttgattgtctactttctgaaaatataatt
tgtcatcatcaaaagta

Coding sequence (CDS) from alignment at sc0000109:558981..559747

>TCONS_00010769 ID=TCONS_00010769|Name=TCONS_00010769|organism=Clytia hemisphaerica|type=CDS|length=597bp|location=Sequence derived from alignment at sc0000109:558981..559747 (Clytia hemisphaerica)
ATGGCTGACACTGCTTCAAAATACGCCATCAAACTCAAGACCAACTTCGA
TGATCCAAAATGGGTCAACCGACACAAATTTATGTTCAACTTTTTGGATA
TCAACGGCAACGGAAAAATCACTTTGGATGAAATCGTCTCCAAAGCTTCA
GATGATATTTGCGCTAAACTTGAAGCTACTCCAGCTCAAACAAAACGTCA
TCAAGATGCTGTTGAGaactttttcaagaaaattggtATGGATTATGGAA
AAGAAGTCGAATTCCCACAGTTCGTTGAAGGATGGAAAAACTTGGCCAAA
CACGACTTGAAACTCTGGTCTCAAAACAAGAAATCTTTGATCCGTGACTG
GGGAGAAGCTGTCTTCGACATTTTCGATAAAGATGGAAGCGGTTCGATCA
GTTTGGACGAATGGAAAGCTTACGGAAGAATCTCCGGAATCTGTCCATCA
GACGAAGACGCCGAGAAGACTTTCAAACATTGCGATTTGGACAACAGTGG
TAAACTTGATGTTGATGAGATGACCAGACAACATTTGGGATTCTGGTACA
CCTTGGACCCCAACGCTGATGGTCTTTATGGCAACTTTGTTCCCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006043XLOC_006043Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010769-proteinTCONS_00010769-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010769-exon-sc0000109-1491911889:558981..559747TCONS_00010769-exon-sc0000109-1491911889:558981..559747Clytia hemisphaericaexon
TCONS_00010769-exon-sc0000109-1510915933:558981..559747TCONS_00010769-exon-sc0000109-1510915933:558981..559747Clytia hemisphaericaexon
TCONS_00010769-exon-sc0000109-1575043694:558981..559747TCONS_00010769-exon-sc0000109-1575043694:558981..559747Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000109supercontigsc0000109:558981..559747 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.723814	0.507244	0.572654	0	0.067754	0.218507	0	0	0	0.12883	0.0434682	4.26801	3.65164	4.18114	4.33403	322.35	330.34	0.135174	0.09229	2294.23	1708.48	1000.01	1436.34	888.197	421.259	0.195328	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010769 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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