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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010768 ID=TCONS_00010768|Name=TCONS_00010768|organism=Clytia hemisphaerica|type=transcript|length=928bp
CAACTTGTCTTAGCTAGCAGATCAATTCTTGCAATTCAAAGCAAATCTTC
TAAAACTCCTCATCATGGCTGACACTGCTTCAAAANGAACAGTGGACTAT
AAAAGACGCACCAAGAATCTTTCCAAACCATCTCCAGCTCAACTTGTCTT
TAGCTAGCAGATCAATTTTTGCAATTCAAAGCAAATCTTCAAAACCTCCT
CATCATGGCTGACACTGCTTCAAAATACGCCATCAAACTCAAGACCAACT
TCGATGATCCAAAATGGGTCAACCGACACAAATTTATGTTCAACTTTTTG
GACATCAACGGCAACGGAAAAATCACTTTGGATGAAATCGTCTCCAAAGC
TTCAGATGATATTTGCGCCAAACTCGAAGCTACTCCAGCTCAAACCCAAC
GTCATCAAGATGCTGTTGAAGCTTTCTTCAAGAAAATCGGTATGGATTAT
GGCAAAGAAGTCGAATTCCCACAGTTTGTCGAAGGATGGAAAAACTTGGC
CAAACACGATTTGAAACTCTGGTCCCAAAACAAGAAATCTTTGATCCGTG
ATTGGGGAGAAGCTGTCTTCGACATCTTCGATAAAGACGGTAGCGGTTCA
ATCAGTTTGGACGAATGGAAAGCTTACGGAAGAATCTCCGGAATCTGCCC
ATCAGACGAAGACGCCGAGAAGACTTTCAAACATTGCGATTTGGACAACA
GTGGCAAACTTGATGTTGATGAGATGACCAGACAACATTTGGGATTCTGG
TACACCTTGGACCCCAACGCTGATGGTCTTTATGGCAACTTTGTTCCCTA
AACAATGGCTGCTGTAAATTGCCTATagattgtattttttttctcgttgt
gtaatttttcatttgattttagtTTCTGTGGAAATATAAACTCTGATCAT
TGAAGAATGACATCGCGTATAATTCCCT Run BLAST on NCBI protein sequence of clytin 1 >TCONS_00010768-protein ID=TCONS_00010768-protein|Name=clytin 1|organism=Clytia hemisphaerica|type=polypeptide|length=198bp
MADTASKYAIKLKTNFDDPKWVNRHKFMFNFLDINGNGKITLDEIVSKAS
DDICAKLEATPAQTQRHQDAVEAFFKKIGMDYGKEVEFPQFVEGWKNLAK
HDLKLWSQNKKSLIRDWGEAVFDIFDKDGSGSISLDEWKAYGRISGICPS
DEDAEKTFKHCDLDNSGKLDVDEMTRQHLGFWYTLDPNADGLYGNFVP Run BLAST on NCBI transcript from alignment at sc0000109:553583..554510 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010768 ID=TCONS_00010768|Name=TCONS_00010768|organism=Clytia hemisphaerica|type=transcript|length=928bp|location=Sequence derived from alignment at sc0000109:553583..554510 (Clytia hemisphaerica)
AGGGAATTATACGCGATGTCATTCTTCAATGATCAGAGTTTATATTTCCA
CAGAAactaaaatcaaatgaaaaattacacaacgagaaaaaaaatacaat
ctATAGGCAATTTACAGCAGCCATTGTTTAGGGAACAAAGTTGCCATAAA
GACCATCAGCGTTGGGGTCCAAGGTGTACCAGAATCCCAAATGTTGTCTG
GTCATCTCATCAACATCAAGTTTGCCACTGTTGTCCAAATCGCAATGTTT
GAAAGTCTTCTCGGCGTCTTCGTCTGATGGGCAGATTCCGGAGATTCTTC
CGTAAGCTTTCCATTCGTCCAAACTGATTGAACCGCTACCGTCTTTATCG
AAGATGTCGAAGACAGCTTCTCCCCAATCACGGATCAAAGATTTCTTGTT
TTGGGACCAGAGTTTCAAATCGTGTTTGGCCAAGTTTTTCCATCCTTCGA
CAAACTGTGGGAATTCGACTTCTTTGCCATAATCCATACCGATTTTCTTG
AAGAAAGCTTCAACAGCATCTTGATGACGTTGGGTTTGAGCTGGAGTAGC
TTCGAGTTTGGCGCAAATATCATCTGAAGCTTTGGAGACGATTTCATCCA
AAGTGATTTTTCCGTTGCCGTTGATGTCCAAAAAGTTGAACATAAATTTG
TGTCGGTTGACCCATTTTGGATCATCGAAGTTGGTCTTGAGTTTGATGGC
GTATTTTGAAGCAGTGTCAGCCATGATGAGGAGGTTTTGAAGATTTGCTT
TGAATTGCAAAAATTGATCTGCTAGCTAAAGACAAGTTGAGCTGGAGATG
GTTTGGAAAGATTCTTGGTGCGTCTTTTATAGTCCACTGTTCNTTTTGAA
GCAGTGTCAGCCATGATGAGGAGTTTTAGAAGATTTGCTTTGAATTGCAA
GAATTGATCTGCTAGCTAAGACAAGTTG Coding sequence (CDS) from alignment at sc0000109:553583..554510 >TCONS_00010768 ID=TCONS_00010768|Name=TCONS_00010768|organism=Clytia hemisphaerica|type=CDS|length=597bp|location=Sequence derived from alignment at sc0000109:553583..554510 (Clytia hemisphaerica)
TTAGGGAACAAAGTTGCCATAAAGACCATCAGCGTTGGGGTCCAAGGTGT
ACCAGAATCCCAAATGTTGTCTGGTCATCTCATCAACATCAAGTTTGCCA
CTGTTGTCCAAATCGCAATGTTTGAAAGTCTTCTCGGCGTCTTCGTCTGA
TGGGCAGATTCCGGAGATTCTTCCGTAAGCTTTCCATTCGTCCAAACTGA
TTGAACCGCTACCGTCTTTATCGAAGATGTCGAAGACAGCTTCTCCCCAA
TCACGGATCAAAGATTTCTTGTTTTGGGACCAGAGTTTCAAATCGTGTTT
GGCCAAGTTTTTCCATCCTTCGACAAACTGTGGGAATTCGACTTCTTTGC
CATAATCCATACCGATTTTCTTGAAGAAAGCTTCAACAGCATCTTGATGA
CGTTGGGTTTGAGCTGGAGTAGCTTCGAGTTTGGCGCAAATATCATCTGA
AGCTTTGGAGACGATTTCATCCAAAGTGATTTTTCCGTTGCCGTTGATGT
CCAAAAAGTTGAACATAAATTTGTGTCGGTTGACCCATTTTGGATCATCG
AAGTTGGTCTTGAGTTTGATGGCGTATTTTGAAGCAGTGTCAGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010768-exon-sc0000109-1491911889:553583..554510 | TCONS_00010768-exon-sc0000109-1491911889:553583..554510 | Clytia hemisphaerica | exon |
| TCONS_00010768-exon-sc0000109-1510915933:553583..554510 | TCONS_00010768-exon-sc0000109-1510915933:553583..554510 | Clytia hemisphaerica | exon |
| TCONS_00010768-exon-sc0000109-1575043694:553583..554510 | TCONS_00010768-exon-sc0000109-1575043694:553583..554510 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000109 | supercontig | sc0000109:553583..554510 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005509 | calcium ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005509 |
calcium ion binding |
Blast
The following BLAST results are available for this feature:
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