TCONS_00010766 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010766
Unique NameTCONS_00010766
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length459

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010766 ID=TCONS_00010766|Name=TCONS_00010766|organism=Clytia hemisphaerica|type=transcript|length=459bp
TCTTATGTTCTACCGCTTTACTTTCTCCTATTTTATTCTTATTACGACAA
CACATTAATACTTCTTTAAGTTTCCGTCTCGCTCTACTGTTTGTCGTCAT
GTATACTAACGCGTTCCCAGTACTGTTCAAATTGGATAGCAACAGTAAAG
CATACATGAGTAGAATGGAGCTGCTTTTACCGAATTTCCGTTCAAAAGGC
TTCATGACAGGTAGGAATAAGATGATGGGTGCGTAACATATGGTGACAAG
AATCAGGAAAGCAGAGGCCAGTTTGGTCATGCTCGTAGTGGAGGCCGAGA
TACGTTTTGATCGCTTGCGGTGACTTCTTAACTTTATAATGGAGAGGATG
TAAAGGACGAAAGCTGATCCGATAAATAATAGGTTAGCTGGTGTCGAGTA
CCTCGCACCACCGTTTTGTCCGAACAAAGCTGGCCCAAATGTGGTGATCA
CTGCACTGT
Run BLAST on NCBI

protein sequence of TCONS_00010766-protein

>TCONS_00010766-protein ID=TCONS_00010766-protein|Name=TCONS_00010766-protein|organism=Clytia hemisphaerica|type=polypeptide|length=152bp
SAVITTFGPALFGQNGGARYSTPANLLFIGSAFVLYILSIIKLRSHRKRS
KRISASTTSMTKLASAFLILVTICYAPIILFLPVMKPFERKFGKSSSILL
MYALLLLSNLNSTGNALVYMTTNSRARRKLKEVLMCCRNKNKIGESKAVE
HK
Run BLAST on NCBI

transcript from alignment at sc0000109:461084..461542

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010766 ID=TCONS_00010766|Name=TCONS_00010766|organism=Clytia hemisphaerica|type=transcript|length=459bp|location=Sequence derived from alignment at sc0000109:461084..461542 (Clytia hemisphaerica)
ACAGTGCAGTGATCACCACATTTGGGCCAGCTTTGTTCGGACAAAACGGT
GGTGCGAGGTACTCGACACCAGCTAACCTATTATTTATCGGATCAGCTTT
CGTCCTTTACATCCTCTCCATTATAAAGTTAAGAAGTCACCGCAAGCGAT
CAAAACGTATCTCGGCCTCCACTACGAGCATGACCAAACTGGCCTCTGCT
TTCCTGATTCTTGTCACCATATGTTACGCACCCATCATCTTATTCCTACC
TGTCATGAAGCCTTTTGAACGGAAATTCGGTAAAAGCAGCTCCATTCTAC
TCATGTATGCTTTACTGTTGCTATCCAATTTGAACAGTACTGGGAACGCG
TTAGTATACATGACGACAAACAGTAGAGCGAGACGGAAACTTAAAGAAGT
ATTAATGTGTTGTCGTAATAAGAATAAAATAGGAGAAAGTAAAGCGGTAG
AACATAAGA

Coding sequence (CDS) from alignment at sc0000109:461084..461542

>TCONS_00010766 ID=TCONS_00010766|Name=TCONS_00010766|organism=Clytia hemisphaerica|type=CDS|length=456bp|location=Sequence derived from alignment at sc0000109:461084..461542 (Clytia hemisphaerica)
AGTGCAGTGATCACCACATTTGGGCCAGCTTTGTTCGGACAAAACGGTGG
TGCGAGGTACTCGACACCAGCTAACCTATTATTTATCGGATCAGCTTTCG
TCCTTTACATCCTCTCCATTATAAAGTTAAGAAGTCACCGCAAGCGATCA
AAACGTATCTCGGCCTCCACTACGAGCATGACCAAACTGGCCTCTGCTTT
CCTGATTCTTGTCACCATATGTTACGCACCCATCATCTTATTCCTACCTG
TCATGAAGCCTTTTGAACGGAAATTCGGTAAAAGCAGCTCCATTCTACTC
ATGTATGCTTTACTGTTGCTATCCAATTTGAACAGTACTGGGAACGCGTT
AGTATACATGACGACAAACAGTAGAGCGAGACGGAAACTTAAAGAAGTAT
TAATGTGTTGTCGTAATAAGAATAAAATAGGAGAAAGTAAAGCGGTAGAA
CATAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006040XLOC_006040Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010766-proteinTCONS_00010766-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010766-exon-sc0000109-1491911889:461084..461542TCONS_00010766-exon-sc0000109-1491911889:461084..461542Clytia hemisphaericaexon
TCONS_00010766-exon-sc0000109-1510915933:461084..461542TCONS_00010766-exon-sc0000109-1510915933:461084..461542Clytia hemisphaericaexon
TCONS_00010766-exon-sc0000109-1575043694:461084..461542TCONS_00010766-exon-sc0000109-1575043694:461084..461542Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000109supercontigsc0000109:461084..461542 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.567644	0.553542	0.964073	0.785996	0.191375	0	0.912245	0.683226	1.79378	0.296252	0.718874	1.79573	0.377522	0.588091	0.886399	0.518859	0.319596	0.545959	0.603418	0.157858	1.09766	2.4093	0.162712	0.295858	0.152364	0.271962	0	0.623009	1.10257	0.802389
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010766 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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