TCONS_00010754 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010754
Unique NameTCONS_00010754
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length243

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010754 ID=TCONS_00010754|Name=TCONS_00010754|organism=Clytia hemisphaerica|type=transcript|length=243bp
GATATATTGTGGTCACTCCTAGAGGAACTAAGTGGATGGCGTAGTATACC
CTTAATTCAGAGGGCGTATATCATAGGCGGCATAGCCTTAAAACAGAGGG
CGTATACTAGAGGCTCTGTACAAAAGGCAAGATGGGCGGCGTGAACATTA
GAGGCCCTAGAGAATCTAGACGTCACAATCAAGTGACCAACCGCGACATG
ATAGGAGAGACCCGTGTGGGCGCAATTCAGTAAGGGTGGGAAG
Run BLAST on NCBI

transcript from alignment at sc0000109:232525..232767

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010754 ID=TCONS_00010754|Name=TCONS_00010754|organism=Clytia hemisphaerica|type=transcript|length=243bp|location=Sequence derived from alignment at sc0000109:232525..232767 (Clytia hemisphaerica)
CTTCCCACCCTTACTGAATTGCGCCCACACGGGTCTCTCCTATCATGTCG
CGGTTGGTCACTTGATTGTGACGTCTAGATTCTCTAGGGCCTCTAATGTT
CACGCCGCCCATCTTGCCTTTTGTACAGAGCCTCTAGTATACGCCCTCTG
TTTTAAGGCTATGCCGCCTATGATATACGCCCTCTGAATTAAGGGTATAC
TACGCCATCCACTTAGTTCCTCTAGGAGTGACCACAATATATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006028XLOC_006028Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010754-exon-sc0000109-1491911889:232525..232767TCONS_00010754-exon-sc0000109-1491911889:232525..232767Clytia hemisphaericaexon
TCONS_00010754-exon-sc0000109-1510915933:232525..232767TCONS_00010754-exon-sc0000109-1510915933:232525..232767Clytia hemisphaericaexon
TCONS_00010754-exon-sc0000109-1575043694:232525..232767TCONS_00010754-exon-sc0000109-1575043694:232525..232767Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000109supercontigsc0000109:232525..232767 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.857115	0.835822	0	1.89891	0	2.74015	1.31276	2.06328	2.39688	2.43636	4.34186	3.425	2.28016	4.14395	1.46009	2.61151	2.57373	2.99473	0	4.76717	5.80095	5.65858	3.931	1.78693	2.76074	0.821298	6.67791	8.01408	1.90266	4.84628
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010754 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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