TCONS_00010743 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00010743
Unique Name	TCONS_00010743
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	949

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000109:527150..535067-
coding sequence from alignment at sc0000109:527150..535067-

transcript sequence

>TCONS_00010743 ID=TCONS_00010743|Name=TCONS_00010743|organism=Clytia hemisphaerica|type=transcript|length=949bp
CCATGGATATGGCTTCATTCGAAAGCGAGGCTGACTCCCAAACAACCAGA
CGCACAGAAACAAGCGAGCAAGGCCGATAAACAAAGTTGAAGTTCAAAGC
CGCGAAAAGTTTCTGGTGTTGAACAGTTGAAGATTTAGTTGTTTTATAGG
ATTTTATATTGGTTTTTAGTTTATAATGTTTAGAAATACTTTCCAGTCAG
GATTTCTCTCAATACTGTATAGTATTGGCAGTAAACCACTGCAAATTTGG
GATAAAACAgttCGGAATGGTCATATTAAAAGGATAACAGACAGTGATAT
TCAATCCCTTATATTAGAAATAAATGGAACAAATGTCAGTACTACATATA
TAACGTGTCCGGCAGATGCTTCAAAAACACTTGGCATCAAACTACCATTT
CTAGTAATGAtaatcaaaaatatgaaaaaatatttcacatttGAAGTACA
GGTACTAGATGATAAAAAGGTACGAAGAAGATTCAGAGCATCAAACTACC
AATCAACGACACGAGTCAAACCTTTCATCTGTACAATGCCAATGAAATTA
GATGACGGTTGGAATCAAATTCAGTTCAATTTATCAGACTTTACACGGCG
TGCATACGGAACAAATTATATCGAAACCCTACGAGTACAgATTCACGCCA
ACTGCAGGATACGACGTGTATACTTCTCCGACAGATTATACTCCGAAGAC
GAACTACCTGCGGAATTCAAATTATATCTACCGGTACAAAATAATGCACA
AGCTGTACAAAAAGCGATGTGAACGGAATGGATTTTGGAATGGTCCAACA
CACTggccTGGGACGAGTTGATCTTTTACATCAAGAATCTTCTGCTAAAA
TTTGCTCCAAAAAGGCCTTAATCTACGGTTtaaagttttgatgacgtcag
caaaaatcatAGATTTTAAACCTAAATATCTTGAAATCTACAAtgtcgg

Run BLAST on NCBI

protein sequence of TCONS_00010743-protein

>TCONS_00010743-protein ID=TCONS_00010743-protein|Name=TCONS_00010743-protein|organism=Clytia hemisphaerica|type=polypeptide|length=198bp
MFRNTFQSGFLSILYSIGSKPLQIWDKTVRNGHIKRITDSDIQSLILEIN
GTNVSTTYITCPADASKTLGIKLPFLVMIIKNMKKYFTFEVQVLDDKKVR
RRFRASNYQSTTRVKPFICTMPMKLDDGWNQIQFNLSDFTRRAYGTNYIE
TLRVQIHANCRIRRVYFSDRLYSEDELPAEFKLYLPVQNNAQAVQKAM

Run BLAST on NCBI

transcript from alignment at sc0000109:527150..535067-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00010743 ID=TCONS_00010743|Name=TCONS_00010743|organism=Clytia hemisphaerica|type=transcript|length=7918bp|location=Sequence derived from alignment at sc0000109:527150..535067- (Clytia hemisphaerica)
CCATGGATATGGCTTCATTCGAAAGCGAGGCTGACTCCCAAACAACCAGA
CGCACAGAAACAAGCGAGCAAGGCCGATAAACAAAGTTGAAGTTCAAAGC
CGCGAAAAGTTTCTGGTGTTGAACAGTTGAAGATTTAGTTGTTTTATAGG
ATTTTATATTGGTTTTTAGTTTATAATGTTTAGAAATACTTTCCAGTCAG
GATTTCTCTCAATACTGTATAGTATTGGCAGTAAACCACTGCAAATTTGG
GATAAAACAGTAAGTATTTTTTATAAATTTTGAAAACATTCTTTTGTACC
GTAGCCTGGATATTTATTCCTATTTCTAAAAAAAGGGTGATAGACTTACA
TGGGGTACCCTGATAACAGCTGGTAATAATTTTCTTACACCCGTGGTAAA
CCTCTGAAGGTGCTTGAAAATGCGCCAGAAAGTCAAAAACTAAATTTTCC
TGGCCCTCCTTTTAAAACACACAATGGCGCAAATATGAGAGGAGACTCTC
GCGCATGCCAGCGCTTTTTCCTGCAGAAAAAAATTCAGCCAAATCTCCCG
CATTTTCAGGATTTTCTCCTGCACCCTCCCGCATTTCCAAAAAATTTTTT
CGATTTCCAGAAAGAAATCCTGATTTTGAATGAAAAAACGAAAACAAATT
TTGACTCCCCCAATTTTTCCAATCATCTGAAAAAAGTTTGGCAGATAAAA
TATTCCATTTTTTTGGAAAAAAATTTCCCCGATATTATATTACTGTACAA
TTTTGGGAAGAAATCTCCCAATTAGGATTTCTGAAAACCAGAAAAAACAT
AATATTTCAGATTTTTGCTTCAAAATGAACATCTCAAGTTGGCAGGTCTG
TTTTTAACGAAATTAAAATTCAAAAAAACTTTGAAAAATTACCTAAATTT
GAGTCAACCTCAAAAACTAATTAAAGAGTACACAATCTGTGCACAGCTGG
ATAGGCTATTTCCCAGAAATTTTGCTGCAGCCATACACTGGCCAATTTAC
ACTTGCAGAATTTTAACTTTAGTGTGTACAGTAATCAAGGCCTAACAAAT
CAAAGAACTATCTCTGAAATTAGTTAACAAATTTTGGTTGGTTGATTAGC
AATCAATCATTTTATAGAACTTTTCTCAGTCAGTTAGTCACACTAGGAAA
TCAAGCTTTCAGAAAAAACAACATCAGTCATCTACAGGATGTATTTACAG
CAACAATAATGATAGTTACCTGAATCAAGTTCAAGTGTTCAAGTTCCCAA
GACAGTTAAAATTAAAACTTGAAAACTTAAAGTGAGACAAAATCACAGAT
TGCAAACGTACAGCCAGCCAGAATATCAACCAACCAAACTTTGTCATTCA
ATTCCCGAGACAGCACTTCAATTTTTAAGGCCTTGTNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGAGATAGCGC
TTCAATTTTTAAGGCCTTGTTTATACGCTAAAGTAAAAGTAATTCCGCAC
ATGTAAATGGGCCTGTGTTTGAGGTCCGGCAAAATTTTCAGGAAATAGCC
TATCCGGCGGTGCGCAGATCTAGGTGGGTTCCGTCTCCTTCGTAGATTTT
TTTCTTGGGATGCTGATCTTCAAATTAGTTTTCAAGGTTGGCTTGGCTCA
AATTTTTTAATCTATGGCTCAGAAACTTTAGGCAATTTCTCATAGTTTTT
GAAAATGTTAATTTCATTAAAAAGCGCCGGGTTATTTTTTCATGAATCCT
TTTAGAAGTTTTGCGGCTCATTTTTTGCTTGAGAGTCAAGTAAACGATAT
AGCGCTTTCGCAACATTAATCTTTAATACGCATTTCGGCGGGACGCTAGT
GTGACTAACTGTCAGTTAAGAACAATTTGCCAATTTGTGTGCACATTCGC
AATCAAAAAATGATTACCTCTATCTTGTTTTTCCAAAAGTCAGATGAGCT
ACAAGATGACCTGATTTTTAAATAAAAAGAATGTATGTGATTTCAGGGTC
AAACGGATTGCCAAAACTATAATTGAAAAAGTATGATTAATCATTATTAT
GATAACAGGATAGTTTCGCTGCAACTTTAGGTCATTTTCAATCCAATTGT
TTGCAATACAAAAAATAGTGCTAATAATCTTTCTTGTTATCTAAACCATA
AAAAACTCTTGAAAGGTTTGGTTTTATTTGTCTTGAAGATTTTTGAAAAT
CAATGATATACTGTGAAAGTAGTTTAGGTATAAACTTATTTCTTTTTTTA
TTATTTTTGTTGGCGAAAACTTTTAGAAATCATTGTGCATCAATCGTTGT
GCTCGCTATAATATAGCAAGTTGAACCTGATTGGTCGAAAAAAACTGTGA
AATATTTGTAATAATTATCAGAGCCGCGAACTCGCTCACTAAACAATTAT
GCGCAATTATTTCATTTAGTCGCGGCTTTTTTATCTTAGAAAGAGTTACG
ACGGTAAAACATATCAAAATCAAATCCTTCCTTCAATAAGTAGACCTTTC
TCAAAGCTAATCACGATTGCCTGTTGCTTTGAAATAAAGAAGTGCAACCT
TGTAACAATTAAGTAAACGTTCACCATCTCCGTCGCGTATGCTATCATTA
ATATTTCGCAAAATCATGTTGATTGAAAACAAAGTCCCCTTTCAAGCTCT
TTTCATTGATCCTTACAAACTTTTCAGCTCGCGATTGAGAGAGTGATATA
TATTTTTTTACTTCTGTTTAGTTGATATAAAAGGTCTGCCAAACACTTCA
CCGGAGAGCCTTTAAATTGTGAGCTTCCCTATAATTATAAACTTTAAAAA
TGATAGAAAGAGAACCGAGAGTGTATTCTCCTCTCGCTGAGCTAATGGTT
TGTTTGCTCTTTCCATTGTTGGCCAATTACCTTACGAATGGTTTATATAA
ATCTAATAGCGAGAGATTGATCTCTTTCGTGTTCTTGCTTTCTCGTTCTC
TTCAAAAACATGTAAAAAACCTAACAAATCGACACTCACACTGCTACTCT
GGATTCTAAGACATTCAACGTTCTGTAAAATGCAAATAAAAATAAAAACA
TAACAGTAAAGATTGCAGCCAAAGCAGCGATATAAACTTTCAGATTAAAA
ACATTGCTGCAGGGCTGTATTTTTAGGAAGAAAATAGCTCTAAAACCCTT
GAAATTGTTGAACCGCAATCTTTGTTTATGCAAAAGGCACCATTTTTTAA
GGGACGTTTTACGAATAATTATTACGGTTAATAAACAATAGAGAAGTTTC
TGATTCGCCAATTCATTTTCTTGCAATTTTTGACTAAGTCTGGCATGTTC
TAAACGTTTTCGCCAACAAAAATCATAAAAAAAGATAAAGTTTATACCTA
AACTACTATGAAAGCACTGTACAAGTTAAAAAATGAAAAACAATAAATAG
ATGAAAAAAGTTATCAAACTGTCAGAATCATTCAACTTTGAGAGAGAATA
AATTTGTAAACATTGGATTTTTTTTATTGGCAATCCTTTGGGGGTCTTCT
AGTTTAGAATGTGCATTGTTGGGACCTCAAAGAAAGTCAGGCTGTGAATC
AGAAACATTAAGTGTCAAAAAGGCTGTGAAACAGTCTACCATCTGGTTAT
CAAGGCTAGAAACTTTTGTACTAAGATATATGAGAAGTATACTGAAAAAT
ACACTCATTGCTTAGCCACCCAGGGAAAGTGGCTTTAAAAGATCCACCTT
AGATGAGACTAAGGGAAATGGGCAATAAATGCCTTAAAATCTTTTTTTTT
TATTTCAGGTTCGGAATGGTCATATTAAAAGGATAACAGACAGTGATATT
CAATCCCTTATATTAGAAATAAATGGAACAAATGTCAGGTATGAACCACT
TTTTCTACTACAATTTTATACTAGTAGCAGCCAAACATGGGCACTTATTT
TTGCTGGTTAGGCCTTCTGATTCTTCTGATCTAATCTTGACATTTCAGGC
AAAAAATTTATTTTTGTGCTTAAATTTTTTATTTTGATGTGTTCAATTCA
TATAACAATCAAGTGGTTTATACATGCTTTTTTGTAAGAATGATGTTTTT
CGTTTCGTGATGGTTATTCTTAAATTTTTTGGGAAATAAAATATAAAATA
TTTTTAATATAAAATATTCTTGAGGTTAGTATTCAATCTAGCCTAATTCT
TGCATGTAAACGTACCTCAAGCAAAGATTTGTCATTTTTGTGAAATTTTT
CAACATNAGTATTCAATCTAGCCTAATTCTTGCATGTAAACGTACCTCAA
GCAAAGATTTGTAATTTTTGTGAAATTTTTCAACATTGCTGGGAAATAAT
TGGCAATTTACTGGTATAATTGCATTCTTAGGTCTAGTTACCAAATTCTA
TGATGGTGTTATTCATAGCATATTTTAGTTTTTTTCATGAAAAATTTCAT
CATGAGTAGTCTTATAAAGTATATTGTTTTAAAGAAAGCATATATTTTGT
TGCCAGTAACATCTTCAATGATATTTTTATCTTCTTTTGTTTTCACTGTT
TTTAATATTGATTTATGTTATNTTTGGTTCCAAAAAAAAAGAGTTTTCAC
TGTTTTTAATATTGATTTTTGTTATCCCTTTTAGTACTACATATATAACG
TGTCCGGCAGATGCTTCAAAAACACTTGGCATCAAACTACCATTTCTAGT
AATGATAATCAAAAATATGAAAAAATATTTCACATTTGAAGTACAGGTAT
GTCCCAGACACAGCAGGAAAAAGGAGGAATAGTATCACTGAAAAATAACT
CTGTTATTCTGGTCTGTAATTTGAATAAACTCAACATGTAAAAATGTTGT
TAATTAACATGAAAGTAGTTTTGGGAAATGCATGCTGATGCATGTCTCCT
TCAGTGATACGTAACGAGTTACCTTTTTTACTGTTACTTTTCATTATCAG
ATTTTGGTCTCACTCTTAAGAATTAGTTGATCAGTGTTATTCTGTCATTT
GAATAATCTGTAACAAAATCTATTAGAGGGGTAACGTCACTTTACTGTAG
CACTGGACAGATTAATGAGGTTTAAGTATGGGCTTGAATTGAATTATGTT
TGTCATCTTGACATCAGAAAGTTGTATCTTACTATGCTAAAAGAATTTCA
TATTTTGTGTCTGTCACGGAAGATGGTAGCAAAGCTGCTATTTCGAATGG
TATGTCAGGGGGTTGATTCGAGTACGAAAGAGAGATTTTGTGTAGTTTTA
AGACTAAATTGTTTTTACGTAACAGGTACTAGATGATAAAAAGGTACGAA
GAAGATTCAGAGCATCAAACTACCAATCAACGACACGAGTCAAACCTTTC
ATCTGTACAATGCCAATGAAATTAGATGACGGTTGGAATCAAATTCAGGT
AAAGGAAAAATTAATGAAACATTCAGATTCATTCTTCTCCATGGCGTGGT
GTCAGAAGTTGGGAAACAAAACACTTGAGTATGTGTTTGTATACAAAAAA
GTCTTAAAGTGATTCTGAGTTGTTTGTTTACCCTTTGAAATGATGAAATC
TTACTGGTTGAATTTTCAAACACAATGAACTGGAATGCTCCTGGAGTGCT
CCTAACTCAAAAATTTCTCTTGGATAAAGAATGAGAAAATCAAATATAAT
TGTTGTATATTTTGAAACTATTTTTAGTTCGTATGGCTGCACTCGGCCAT
TTTCACAAAAACGTGAAAGATGACCTTTCTATTGATTCGCAATGAACTCC
AAACAAAAACCCTCAGATTTGAATTCAAAGGCTCTAAAACCACTTGATCA
ACAAAACAATTTAATTACAAAGGGTTTGCTTGAGTAACATCATTATGGTC
AATTTTATCTGCTTCGCCTTTTAGTTCAATTTATCAGACTTTACACGGCG
TGCATACGGAACAAATTATATCGAAACCCTACGAGTACAGGTAAAATAAT
TTTCCTTATCTACATCTATCAAATCCTGATTGCATTACCAAATTTCAGCA
TGTTTTTCTCTGGTAGTCAGGTAGAGTTCCTCAAAATACCATACTTTACT
AGTTCTTTTATCCACCAAAACTGATTTATTTAGTTCATGCGTCAAATTTC
CGCTAATTTAGACCCTCGAATATGACTTTGAACAATGAGATTCATATTCT
TTGCCGTCATGGCTCCATCTGAAAACTTGATTTTTAACATTTTTATTCGT
TTTAGCATAGCTTTTGATCTAATTGACCAAATTTGATAAATAAGCCATCA
AAGTTTGATTTTTTCTTCCTCGTTCGAATGAAAACACTATAATTTACTAT
AAATGAATATAGCTTTTCATTTTATTAAAGTGCCTGACTTATTTCTGGCA
CACCCGGTAGAAAGTTCCAGTTTTCCCATCTCTGATGATGCTTTGAAAAA
AATTCTGTTGTTTTTAGATTCACGCCAACTGCAGGATACGACGTGTATAC
TTCTCCGACAGATTATACTCCGAAGACGAACTACCTGCGGAATTCAAATT
ATATCTACCGGTACAAAATAATGCACAAGCTGTACAAAAAGCGGTGAGTT
AAATTCCATTTGCTGTAAGTGTGCACTTTTTTTACTACCATGTGGAAACC
ACACTACCATGTGGAAACCAGTCTCGAGGGAATTACGCTTAATTACGCTG
ACATGGTTTCCACACGGCAGGAAAAGTCAAAGAAAAGCGAACGAACTTTG
GTTTAAAGGTTAGAATGTACCTTTTCCAAATACGTCAAAATGTATTGTTA
TGTTAACCTTATTTCCAACAATTTTAATGCCAAGATCTGCCAAGATTGCT
CAATATCATTGGTGGCTGTCACAAACTTATGTGAAGTGCTTTAATATATA
CCATTTCTGGATTAAATTTAGCTTGGATTAATCTGGATCAATTTTTGCCA
TTTCCCAGAAATTTTAAAGTCCTCTCGAGATAATTATATACGAAGTAAAT
AAAATAAATTATGTGAACTATGGAACTATTAGATTAATTGATTCTTAATG
AATCGCAAAAGTCTACGCGAAAACTGTCAACTAATACTCTCTTTGCATTT
TATTTAGATGTGAACGGAATGGATTTTGGAATGGTCCAACACACTGTATA
ATATTATTATTTTGTTTATTTTTAAGAGCTTATTACATCATAACAATAAT
ATCCTGCCTATATATCCAAATTCTTTGATTTTTTTACACATTTTCTCAAT
TTACAATGAAACCGACACGTAATGGTTTAATTTTGAGTTCGAAACGTTTT
GAGATCGAATCTTTAAAAACAAAATTTTAAAGATGACAGTGTCTATCTAT
TCTGTTAATCTCAGGTTTTCGTTTTTGATTTTGCTTACTAAAAAAGAGAC
CAAGGTATAATTCATGATATGCACCATTGCAATGTCTTCTACGGACCCAA
AAGCTGATTGGTTAAAAGTGACGTATTGACTGATTTTACGTCATTTACAA
CCAATCAGCTATTGGGTCCGTGAAGTAATGCGAGAAGACATCGCAATGGT
GCATATCATGAATAGGAGAAATCATGGAGAATTTTAAAATTCATCAAGGC
AAATCTTACTCGTATTGTAGTTTTTTTGCTGTGTAACGTCCTATCTACTC
CCAAATACCTAGTTTAGACTAAATCTTTTATTGACCCTAAACAAGTCCAG
ATCGTGTTTTGATTGGGCAATTTTTAGTAAAAAAGGGTATTGATATTAAT
TAACAACTTATTTTTCATTATTGTACATAATTGATATGATGAAAGAAACG
ATATTATGATAATTTAATTAATCAGAAAAAAGTGATTGTTTTCATTGTTT
TCTTTTAATTTTTTGATTTTTAGGGCCTGGGACGAGTTGATCTTTTACAT
CAAGAATCTTCTGCTAAAATTTGCTCCAAAAAGGCCTTAATCTACGGTTT
AAAGTTTTGATGACGTCAGCAAAAATCATAGATTTTAAACCTAAATATCT
TGAAATCTACAATGTCGG

Coding sequence (CDS) from alignment at sc0000109:527150..535067-

>TCONS_00010743 ID=TCONS_00010743|Name=TCONS_00010743|organism=Clytia hemisphaerica|type=CDS|length=4179bp|location=Sequence derived from alignment at sc0000109:527150..535067- (Clytia hemisphaerica)
ATGTGAATTCACGCCAACTGCAGGATACGACGTGTATACTTCTCCGACAG
ATTATACTCCGAAGACGAACTACCTGCGGAATTCAAATTATATCTACCGG
TACAAAATAATGCACAAGCTGTACAAAAAGCGTTCAATTTATCAGACTTT
ACACGGCGTGCATACGGAACAAATTATATCGAAACCCTACGAGTACAGGT
ACTAGATGATAAAAAGGTACGAAGAAGATTCAGAGCATCAAACTACCAAT
CAACGACACGAGTCAAACCTTTCATCTGTACAATGCCAATGAAATTAGAT
GACGGTTGGAATCAAATTCAGTACTACATATATAACGTGTCCGGCAGATG
CTTCAAAAACACTTGGCATCAAACTACCATTTCTAGTAATGATAATCAAA
AATATGAAAAAATATTTCACATTTGAAGTACAGGTTCGGAATGGTCATAT
TAAAAGGATAACAGACAGTGATATTCAATCCCTTATATTAGAAATAAATG
GAACAAATGTCAGATGTTTAGAAATACTTTCCAGTCAGGATTTCTCTCAA
TACTGTATAGTATTGGCAGTAAACCACTGCAAATTTGGGATAAAACAATG
TGAATTCACGCCAACTGCAGGATACGACGTGTATACTTCTCCGACAGATT
ATACTCCGAAGACGAACTACCTGCGGAATTCAAATTATATCTACCGGTAC
AAAATAATGCACAAGCTGTACAAAAAGCGTTCAATTTATCAGACTTTACA
CGGCGTGCATACGGAACAAATTATATCGAAACCCTACGAGTACAGGTACT
AGATGATAAAAAGGTACGAAGAAGATTCAGAGCATCAAACTACCAATCAA
CGACACGAGTCAAACCTTTCATCTGTACAATGCCAATGAAATTAGATGAC
GGTTGGAATCAAATTCAGTACTACATATATAACGTGTCCGGCAGATGCTT
CAAAAACACTTGGCATCAAACTACCATTTCTAGTAATGATAATCAAAAAT
ATGAAAAAATATTTCACATTTGAAGTACAGGTTCGGAATGGTCATATTAA
AAGGATAACAGACAGTGATATTCAATCCCTTATATTAGAAATAAATGGAA
CAAATGTCAGATGTTTAGAAATACTTTCCAGTCAGGATTTCTCTCAATAC
TGTATAGTATTGGCAGTAAACCACTGCAAATTTGGGATAAAACAATGTGA
ATTCACGCCAACTGCAGGATACGACGTGTATACTTCTCCGACAGATTATA
CTCCGAAGACGAACTACCTGCGGAATTCAAATTATATCTACCGGTACAAA
ATAATGCACAAGCTGTACAAAAAGCGTTCAATTTATCAGACTTTACACGG
CGTGCATACGGAACAAATTATATCGAAACCCTACGAGTACAGGTACTAGA
TGATAAAAAGGTACGAAGAAGATTCAGAGCATCAAACTACCAATCAACGA
CACGAGTCAAACCTTTCATCTGTACAATGCCAATGAAATTAGATGACGGT
TGGAATCAAATTCAGTACTACATATATAACGTGTCCGGCAGATGCTTCAA
AAACACTTGGCATCAAACTACCATTTCTAGTAATGATAATCAAAAATATG
AAAAAATATTTCACATTTGAAGTACAGGTTCGGAATGGTCATATTAAAAG
GATAACAGACAGTGATATTCAATCCCTTATATTAGAAATAAATGGAACAA
ATGTCAGATGTTTAGAAATACTTTCCAGTCAGGATTTCTCTCAATACTGT
ATAGTATTGGCAGTAAACCACTGCAAATTTGGGATAAAACAATGTGAATT
CACGCCAACTGCAGGATACGACGTGTATACTTCTCCGACAGATTATACTC
CGAAGACGAACTACCTGCGGAATTCAAATTATATCTACCGGTACAAAATA
ATGCACAAGCTGTACAAAAAGCGTTCAATTTATCAGACTTTACACGGCGT
GCATACGGAACAAATTATATCGAAACCCTACGAGTACAGGTACTAGATGA
TAAAAAGGTACGAAGAAGATTCAGAGCATCAAACTACCAATCAACGACAC
GAGTCAAACCTTTCATCTGTACAATGCCAATGAAATTAGATGACGGTTGG
AATCAAATTCAGTACTACATATATAACGTGTCCGGCAGATGCTTCAAAAA
CACTTGGCATCAAACTACCATTTCTAGTAATGATAATCAAAAATATGAAA
AAATATTTCACATTTGAAGTACAGGTTCGGAATGGTCATATTAAAAGGAT
AACAGACAGTGATATTCAATCCCTTATATTAGAAATAAATGGAACAAATG
TCAGATGTTTAGAAATACTTTCCAGTCAGGATTTCTCTCAATACTGTATA
GTATTGGCAGTAAACCACTGCAAATTTGGGATAAAACAATGTGAATTCAC
GCCAACTGCAGGATACGACGTGTATACTTCTCCGACAGATTATACTCCGA
AGACGAACTACCTGCGGAATTCAAATTATATCTACCGGTACAAAATAATG
CACAAGCTGTACAAAAAGCGTTCAATTTATCAGACTTTACACGGCGTGCA
TACGGAACAAATTATATCGAAACCCTACGAGTACAGGTACTAGATGATAA
AAAGGTACGAAGAAGATTCAGAGCATCAAACTACCAATCAACGACACGAG
TCAAACCTTTCATCTGTACAATGCCAATGAAATTAGATGACGGTTGGAAT
CAAATTCAGTACTACATATATAACGTGTCCGGCAGATGCTTCAAAAACAC
TTGGCATCAAACTACCATTTCTAGTAATGATAATCAAAAATATGAAAAAA
TATTTCACATTTGAAGTACAGGTTCGGAATGGTCATATTAAAAGGATAAC
AGACAGTGATATTCAATCCCTTATATTAGAAATAAATGGAACAAATGTCA
GATGTTTAGAAATACTTTCCAGTCAGGATTTCTCTCAATACTGTATAGTA
TTGGCAGTAAACCACTGCAAATTTGGGATAAAACAATGTGAATTCACGCC
AACTGCAGGATACGACGTGTATACTTCTCCGACAGATTATACTCCGAAGA
CGAACTACCTGCGGAATTCAAATTATATCTACCGGTACAAAATAATGCAC
AAGCTGTACAAAAAGCGTTCAATTTATCAGACTTTACACGGCGTGCATAC
GGAACAAATTATATCGAAACCCTACGAGTACAGGTACTAGATGATAAAAA
GGTACGAAGAAGATTCAGAGCATCAAACTACCAATCAACGACACGAGTCA
AACCTTTCATCTGTACAATGCCAATGAAATTAGATGACGGTTGGAATCAA
ATTCAGTACTACATATATAACGTGTCCGGCAGATGCTTCAAAAACACTTG
GCATCAAACTACCATTTCTAGTAATGATAATCAAAAATATGAAAAAATAT
TTCACATTTGAAGTACAGGTTCGGAATGGTCATATTAAAAGGATAACAGA
CAGTGATATTCAATCCCTTATATTAGAAATAAATGGAACAAATGTCAGAT
GTTTAGAAATACTTTCCAGTCAGGATTTCTCTCAATACTGTATAGTATTG
GCAGTAAACCACTGCAAATTTGGGATAAAACAATGTGAATTCACGCCAAC
TGCAGGATACGACGTGTATACTTCTCCGACAGATTATACTCCGAAGACGA
ACTACCTGCGGAATTCAAATTATATCTACCGGTACAAAATAATGCACAAG
CTGTACAAAAAGCGTTCAATTTATCAGACTTTACACGGCGTGCATACGGA
ACAAATTATATCGAAACCCTACGAGTACAGGTACTAGATGATAAAAAGGT
ACGAAGAAGATTCAGAGCATCAAACTACCAATCAACGACACGAGTCAAAC
CTTTCATCTGTACAATGCCAATGAAATTAGATGACGGTTGGAATCAAATT
CAGTACTACATATATAACGTGTCCGGCAGATGCTTCAAAAACACTTGGCA
TCAAACTACCATTTCTAGTAATGATAATCAAAAATATGAAAAAATATTTC
ACATTTGAAGTACAGGTTCGGAATGGTCATATTAAAAGGATAACAGACAG
TGATATTCAATCCCTTATATTAGAAATAAATGGAACAAATGTCAGATGTT
TAGAAATACTTTCCAGTCAGGATTTCTCTCAATACTGTATAGTATTGGCA
GTAAACCACTGCAAATTTGGGATAAAACA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_006019	XLOC_006019	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00010743-protein	TCONS_00010743-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000109	supercontig	sc0000109:527150..535067 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
83.9743	83.4216	52.6264	46.87	126.419	91.2353	56.1119	51.2303	69.6701	69.8359	51.2548	51.5059	14.012	15.5415	15.8658	18.9789	25.8853	23.1688	15.7541	15.4098	22.0443	25.1263	45.3606	46.9475	183.641	140.346	40.3824	33.0286	18.5371	24.1123

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR007714	CFA20/WDR90/C3orf67

Blast

[Close]

BLAST of TCONS_00010743 vs. Swiss-Prot (Human)
Match: CFA20 (Cilia- and flagella-associated protein 20 OS=Homo sapiens GN=CFAP20 PE=1 SV=1)

HSP 1 Score: 373.244 bits (957), Expect = 3.496e-130
Identity = 177/190 (93.16%), Postives = 183/190 (96.32%), Query Frame = 2

Query:  182 RNTFQSGFLSILYSIGSKPLQIWDKTVRNGHIKRITDSDIQSLILEINGTNVSTTYITCPADASKTLGIKLPFLVMIIKNMKKYFTFEVQVLDDKKVRRRFRASNYQSTTRVKPFICTMPMKLDDGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRVYFSDRLYSEDELPAEFKLYLPVQNNAQ 751
            +NTFQSGFLSILYSIGSKPLQIWDK VRNGHIKRITD+DIQSL+LEI GTNVSTTYITCPAD  KTLGIKLPFLVMIIKN+KKYFTFEVQVLDDK VRRRFRASNYQSTTRVKPFICTMPM+LDDGWNQIQFNL DFTRRAYGTNYIETLRVQIHANCRIRRVYFSDRLYSEDELPAEFKLYLPVQN A+
Sbjct:    3 KNTFQSGFLSILYSIGSKPLQIWDKKVRNGHIKRITDNDIQSLVLEIEGTNVSTTYITCPADPKKTLGIKLPFLVMIIKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDDGWNQIQFNLLDFTRRAYGTNYIETLRVQIHANCRIRRVYFSDRLYSEDELPAEFKLYLPVQNKAK 192

The following BLAST results are available for this feature:

BLAST of TCONS_00010743 vs. Swiss-Prot (Human)

BLAST of TCONS_00010743 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CFA20	3.496e-130	93.16	Cilia- and flagella-associated protein 20 OS=Homo ...	[more]

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TCONS_00010743 (transcript) - C. hemisphaerica