TCONS_00010741 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010741
Unique NameTCONS_00010741
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1235

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010741 ID=TCONS_00010741|Name=TCONS_00010741|organism=Clytia hemisphaerica|type=transcript|length=1235bp
TAGAGATGAAATATAATGTCTAGAGAAGAAAATGTCTCGTTGGTATGACA
CCTCATCTCTAGATTCGAACGAATCTTTGCCATTAATTGGATCACCATCA
ACACCACAAGAGAACTGCCGTAAAAGCAGAATTCACACACAAGCCAATTA
TTGGGGCTGTGTTAAACACACACTTTCTTATATTCTACGTTTTTTATTCT
GGTCTGCTGGATTCAACCGTCACAAGAGCATCTTCACTAAAATATACAGT
TGTACTATTCTATGCATTTGTTGGTATCAAGTTGTTTACGAGATAGCTCG
TAATTCTGGACATTTAAATTTTGTTGAGAACAAGAATACCTCTGATATAA
CAACAAATCAGAAGTTAGAAAATGCATCATTTCTTACGTCAGCTTTTGGT
ACAGCATTTTCATATACTTTTATGTATATCTGCTTAATGATTATGTATAA
ACCAAGCAGCAATTCAATCACTCCTTATGCTGCATTGAGAGATATGGGAA
ATACAAAAGCTCGTATCATTCTGTTTACTTGGTTGTTTTTCTCATGTATT
TTTGTTGGATATATTTTGATTTATGTTTACATACATGGGTCAGAGATTAA
TCACCATTCAACATTGgtaaatttaatcaaatatttcagCGAGACAACGG
AGTATTTAGCACAATGGGTGGCAACAGTTTCCATGTTTGCATTTTCCTGC
TCAGCATTTGCAATCGGTACTTTTGCATCAGACACTTTTCGCAGAATCAA
AAGTCTCAATGGTGGATCAATCGACAGCGTTATAACAATACATAAAGAAT
TACGTGCCATTGTCACTGAAACTACAAATGCTTTTTCCTTCTGGTTTCTA
TTACATTGGCTCCTCTACGGCATTACTGTAATCATAGGCTTTGTTGTGGT
GGCTTTACACAAATTGGGTCATTCTGAGACAGACAAGAAGATCTATTTTG
GAACCTTTTTTGCCATTAATGTTTTCTCCTTTGTTTATCCATGCATATGT
GCAGCTTACATAACAACAGCTTGTGCAGcCATTCCATCTCGAATCAACAA
CACCATCAGTGCTGACTGGCATGAAGGACATATTTTCAAAGAACGAAAAG
AACTGCAGTTATTTGTTTCGTATTGTGCTGCATCTCCCGTATGTTTCAAA
ATTGGAAGAATCACTTTCACGTCAACTTTAGCATGGTTCTCTTTCTTTTT
TGGGAGTACTGGACTCTTGTTCCATTTCTTTTGAG
Run BLAST on NCBI

protein sequence of TCONS_00010741-protein

>TCONS_00010741-protein ID=TCONS_00010741-protein|Name=TCONS_00010741-protein|organism=Clytia hemisphaerica|type=polypeptide|length=400bp
MSRWYDTSSLDSNESLPLIGSPSTPQENCRKSRIHTQANYWGCVKHTLSY
ILRFLFWSAGFNRHKSIFTKIYSCTILCICWYQVVYEIARNSGHLNFVEN
KNTSDITTNQKLENASFLTSAFGTAFSYTFMYICLMIMYKPSSNSITPYA
ALRDMGNTKARIILFTWLFFSCIFVGYILIYVYIHGSEINHHSTLVNLIK
YFSETTEYLAQWVATVSMFAFSCSAFAIGTFASDTFRRIKSLNGGSIDSV
ITIHKELRAIVTETTNAFSFWFLLHWLLYGITVIIGFVVVALHKLGHSET
DKKIYFGTFFAINVFSFVYPCICAAYITTACAAIPSRINNTISADWHEGH
IFKERKELQLFVSYCAASPVCFKIGRITFTSTLAWFSFFFGSTGLLFHFF
Run BLAST on NCBI

transcript from alignment at sc0000109:265985..268378-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010741 ID=TCONS_00010741|Name=TCONS_00010741|organism=Clytia hemisphaerica|type=transcript|length=2394bp|location=Sequence derived from alignment at sc0000109:265985..268378- (Clytia hemisphaerica)
TAGAGATGAAATATAATGTCTAGAGAAGAAAATGTCTCGTTGGTATGACA
CCTCATCTCTAGATTCGAACGAATCTTTGCCATTAATTGGATCACCATCA
ACACCACAAGAGAACTGCCGTAAAAGCAGAATTCACACACAAGCCAATTA
TTGGGGCTGTGTTAAACACACACTTTCTTATATTCTACGTTTTTTATTCT
GGTCTGCTGGATTCAACCGTCACAAGAGCATCTTCACTAAAATATACAGT
TGTACTATTCTATGCATTTGTTGGTATCAAGTTGTTTACGAGATAGCTCG
TAATTCTGGACATTTAAATTTTGTTGAGAACAAGAATACCTCTGATATAA
CAACAAATCAGAAGTTAGAAAATGCATCATTTCTTACGTCAGCTTTTGGT
ACAGCATTTTCATATACTTTTATGTATATCTGCTTAATGATTATGTATAA
ACCAAGCAGCAATTCAATCACTCCTTATGCTGCATTGAGAGATATGGGAA
ATACAAAAGCTCGTATCATTCTGTTTACTTGGTTGTTTTTCTCATGTATT
TTTGTTGGATATATTTTGATTTATGTTTACATACATGGGTCAGAGATTAA
TCACCATTCAACATTGGTAAATTTAATCAAATATTTCAGCGAGACAACGG
AGTATTTAGCACAATGGGTGGCAACAGTTTCCATGTTTGCATTTTCCTGC
TCAGCATTTGCAATCGGTAAGCTGTTAAGAGATCTTAAAGAATCATTTTT
CAAGACTTTCATGCCTTCCCCTAACAAGTTTCAACTTTTATTTAGCATTT
CCTAACTCGGTATTTATTTCTCCAACTTGTCTTTGCAGAATGCAGAATCT
GAGTGATATATTTAATTAAGAAAAAGAAAGTCTCTCTGCTATCAGGTTTT
CTTGTGACCAACTCATTGAAAAGAAATCTAATCAAGCAAATTTGTCCCTC
CAAGTGTTTACTCGCAATTTATAATTAGGCTGAATTACTTTCATAATATT
GATAATGCCATTAATTCATATCTTTTCTGTCTACATTTTAAGGTACTTTT
GCATCAGACACTTTTCGCAGAATCAAAAGTCTCAATGGTGGATCAATCGA
CAGCGTTATAACAATACATAAAGAATTACGTGCCATTGTCACTGAAACTA
CAAATGCTTTTTCCTTCTGGTTTCTATTACATTGGCTCCTCTACGGCATT
ACTGTAATCATAGGCTTTGTTGTGGTGGCTTTACACAAATTGGGTCATTC
TGAGACAGACAAGAAGATCTATTTTGGAACCTTTTTTGCCATTAATGTTT
TCTCCTTTGTTTATCCATGCATATGTGCAGCTTACATAACAACAGCTTGT
GCAGGTGAGTGTTATACACGTTTTTTTATAAGAACATCCAAAATTTTTGG
AGCTCTGGGATTCTTAACTTTTTGAGTTTTTAAAAGTCTAAAAATGTCCT
TAACATGTTTTTGTTTTAATCATTTTGTGAGTATTTCTGTTCAGAAATTG
GGTGTTTTAGATTCCACTGAGACTTAAAATGTTCTTAACATGTTCTTATT
TTCATCATTTTGTGAGTATTTCTGTGCAACTTACTAAGAAATTGGGTGTT
TTAGATTCCACTGAGCCTTAAAATGTTCTTAACTTGTTCTTAGCATTTTG
GTCATCGATGCCTTATGTTCTTATATAGCTTGTTCTTATAAAAGTCGATG
TTAAAACCTTTAATGTCAGTCCTCTACAACGATTACCGCTCTACGTCAAA
ATTTATGGAAACTTTTTTTGGACCACCCGGTATAGTGAACTATTTGGCGC
TAGATATTCTAGATGTTTATTGATAGTTATAAAGCATAGTAACCAACACC
TAAAAATCAGGGCGTGATCTCCCATGAATTTAGAAATCATCTCAACCCAA
CCTAATTTGGAAATCTGGAGGTTGTTTGTCTATCCCCTTCCAGCTGAGAT
GTTGTGTAGCTCAGTCTTATACTGGAGCTGTTAAAAAGCAGGCTCGGTGG
AACAACTTTAAAAGTGAGGAGGCTGAAGGCTCAAAATGAGATGAAATTTG
CTAGAAATTTGAGAAAAAAATCTCATTTGCTCAAAATTGGTGAGGTTGAA
GTCTCCCCAATCTCCCCGCTTTCGCCGGGTCGGAAAAGTGAAATTAGTTT
TAGTTTCTTAAAATATTTTCTCCAAATTTTATTTCAGCCATTCCATCTCG
AATCAACAACACCATCAGTGCTGACTGGCATGAAGGACATATTTTCAAAG
AACGAAAAGAACTGCAGTTATTTGTTTCGTATTGTGCTGCATCTCCCGTA
TGTTTCAAAATTGGAAGAATCACTTTCACGTCAACTTTAGCATGGTTCTC
TTTCTTTTTTGGGAGTACTGGACTCTTGTTCCATTTCTTTTGAG

Coding sequence (CDS) from alignment at sc0000109:265985..268378-

>TCONS_00010741 ID=TCONS_00010741|Name=TCONS_00010741|organism=Clytia hemisphaerica|type=CDS|length=3609bp|location=Sequence derived from alignment at sc0000109:265985..268378- (Clytia hemisphaerica)
CCATTCCATCTCGAATCAACAACACCATCAGTGCTGACTGGCATGAAGGA
CATATTTTCAAAGAACGAAAAGAACTGCAGTTATTTGTTTCGTATTGTGC
TGCATCTCCCGTATGTTTCAAAATTGGAAGAATCACTTTCACGTCAACTT
TAGCATGGTTCTCTTTCTTTTTTGGGAGTACTGGACTCTTGTTCCATTTC
TTTTGAGTACTTTTGCATCAGACACTTTTCGCAGAATCAAAAGTCTCAAT
GGTGGATCAATCGACAGCGTTATAACAATACATAAAGAATTACGTGCCAT
TGTCACTGAAACTACAAATGCTTTTTCCTTCTGGTTTCTATTACATTGGC
TCCTCTACGGCATTACTGTAATCATAGGCTTTGTTGTGGTGGCTTTACAC
AAATTGGGTCATTCTGAGACAGACAAGAAGATCTATTTTGGAACCTTTTT
TGCCATTAATGTTTTCTCCTTTGTTTATCCATGCATATGTGCAGCTTACA
TAACAACAGCTTGTGCAGATGTCTCGTTGGTATGACACCTCATCTCTAGA
TTCGAACGAATCTTTGCCATTAATTGGATCACCATCAACACCACAAGAGA
ACTGCCGTAAAAGCAGAATTCACACACAAGCCAATTATTGGGGCTGTGTT
AAACACACACTTTCTTATATTCTACGTTTTTTATTCTGGTCTGCTGGATT
CAACCGTCACAAGAGCATCTTCACTAAAATATACAGTTGTACTATTCTAT
GCATTTGTTGGTATCAAGTTGTTTACGAGATAGCTCGTAATTCTGGACAT
TTAAATTTTGTTGAGAACAAGAATACCTCTGATATAACAACAAATCAGAA
GTTAGAAAATGCATCATTTCTTACGTCAGCTTTTGGTACAGCATTTTCAT
ATACTTTTATGTATATCTGCTTAATGATTATGTATAAACCAAGCAGCAAT
TCAATCACTCCTTATGCTGCATTGAGAGATATGGGAAATACAAAAGCTCG
TATCATTCTGTTTACTTGGTTGTTTTTCTCATGTATTTTTGTTGGATATA
TTTTGATTTATGTTTACATACATGGGTCAGAGATTAATCACCATTCAACA
TTGGTAAATTTAATCAAATATTTCAGCGAGACAACGGAGTATTTAGCACA
ATGGGTGGCAACAGTTTCCATGTTTGCATTTTCCTGCTCAGCATTTGCAA
TCGCCATTCCATCTCGAATCAACAACACCATCAGTGCTGACTGGCATGAA
GGACATATTTTCAAAGAACGAAAAGAACTGCAGTTATTTGTTTCGTATTG
TGCTGCATCTCCCGTATGTTTCAAAATTGGAAGAATCACTTTCACGTCAA
CTTTAGCATGGTTCTCTTTCTTTTTTGGGAGTACTGGACTCTTGTTCCAT
TTCTTTTGAGTACTTTTGCATCAGACACTTTTCGCAGAATCAAAAGTCTC
AATGGTGGATCAATCGACAGCGTTATAACAATACATAAAGAATTACGTGC
CATTGTCACTGAAACTACAAATGCTTTTTCCTTCTGGTTTCTATTACATT
GGCTCCTCTACGGCATTACTGTAATCATAGGCTTTGTTGTGGTGGCTTTA
CACAAATTGGGTCATTCTGAGACAGACAAGAAGATCTATTTTGGAACCTT
TTTTGCCATTAATGTTTTCTCCTTTGTTTATCCATGCATATGTGCAGCTT
ACATAACAACAGCTTGTGCAGATGTCTCGTTGGTATGACACCTCATCTCT
AGATTCGAACGAATCTTTGCCATTAATTGGATCACCATCAACACCACAAG
AGAACTGCCGTAAAAGCAGAATTCACACACAAGCCAATTATTGGGGCTGT
GTTAAACACACACTTTCTTATATTCTACGTTTTTTATTCTGGTCTGCTGG
ATTCAACCGTCACAAGAGCATCTTCACTAAAATATACAGTTGTACTATTC
TATGCATTTGTTGGTATCAAGTTGTTTACGAGATAGCTCGTAATTCTGGA
CATTTAAATTTTGTTGAGAACAAGAATACCTCTGATATAACAACAAATCA
GAAGTTAGAAAATGCATCATTTCTTACGTCAGCTTTTGGTACAGCATTTT
CATATACTTTTATGTATATCTGCTTAATGATTATGTATAAACCAAGCAGC
AATTCAATCACTCCTTATGCTGCATTGAGAGATATGGGAAATACAAAAGC
TCGTATCATTCTGTTTACTTGGTTGTTTTTCTCATGTATTTTTGTTGGAT
ATATTTTGATTTATGTTTACATACATGGGTCAGAGATTAATCACCATTCA
ACATTGGTAAATTTAATCAAATATTTCAGCGAGACAACGGAGTATTTAGC
ACAATGGGTGGCAACAGTTTCCATGTTTGCATTTTCCTGCTCAGCATTTG
CAATCGCCATTCCATCTCGAATCAACAACACCATCAGTGCTGACTGGCAT
GAAGGACATATTTTCAAAGAACGAAAAGAACTGCAGTTATTTGTTTCGTA
TTGTGCTGCATCTCCCGTATGTTTCAAAATTGGAAGAATCACTTTCACGT
CAACTTTAGCATGGTTCTCTTTCTTTTTTGGGAGTACTGGACTCTTGTTC
CATTTCTTTTGAGTACTTTTGCATCAGACACTTTTCGCAGAATCAAAAGT
CTCAATGGTGGATCAATCGACAGCGTTATAACAATACATAAAGAATTACG
TGCCATTGTCACTGAAACTACAAATGCTTTTTCCTTCTGGTTTCTATTAC
ATTGGCTCCTCTACGGCATTACTGTAATCATAGGCTTTGTTGTGGTGGCT
TTACACAAATTGGGTCATTCTGAGACAGACAAGAAGATCTATTTTGGAAC
CTTTTTTGCCATTAATGTTTTCTCCTTTGTTTATCCATGCATATGTGCAG
CTTACATAACAACAGCTTGTGCAGATGTCTCGTTGGTATGACACCTCATC
TCTAGATTCGAACGAATCTTTGCCATTAATTGGATCACCATCAACACCAC
AAGAGAACTGCCGTAAAAGCAGAATTCACACACAAGCCAATTATTGGGGC
TGTGTTAAACACACACTTTCTTATATTCTACGTTTTTTATTCTGGTCTGC
TGGATTCAACCGTCACAAGAGCATCTTCACTAAAATATACAGTTGTACTA
TTCTATGCATTTGTTGGTATCAAGTTGTTTACGAGATAGCTCGTAATTCT
GGACATTTAAATTTTGTTGAGAACAAGAATACCTCTGATATAACAACAAA
TCAGAAGTTAGAAAATGCATCATTTCTTACGTCAGCTTTTGGTACAGCAT
TTTCATATACTTTTATGTATATCTGCTTAATGATTATGTATAAACCAAGC
AGCAATTCAATCACTCCTTATGCTGCATTGAGAGATATGGGAAATACAAA
AGCTCGTATCATTCTGTTTACTTGGTTGTTTTTCTCATGTATTTTTGTTG
GATATATTTTGATTTATGTTTACATACATGGGTCAGAGATTAATCACCAT
TCAACATTGGTAAATTTAATCAAATATTTCAGCGAGACAACGGAGTATTT
AGCACAATGGGTGGCAACAGTTTCCATGTTTGCATTTTCCTGCTCAGCAT
TTGCAATCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006017XLOC_006017Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010741-proteinTCONS_00010741-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010741-exon-sc0000109-1575043694:267663..268378TCONS_00010741-exon-sc0000109-1575043694:267663..268378Clytia hemisphaericaexon
TCONS_00010741-exon-sc0000109-1575043694:267025..267336TCONS_00010741-exon-sc0000109-1575043694:267025..267336Clytia hemisphaericaexon
TCONS_00010741-exon-sc0000109-1575043694:265985..266191TCONS_00010741-exon-sc0000109-1575043694:265985..266191Clytia hemisphaericaexon
TCONS_00010741-exon-sc0000109-1510915933:267663..268378TCONS_00010741-exon-sc0000109-1510915933:267663..268378Clytia hemisphaericaexon
TCONS_00010741-exon-sc0000109-1510915933:267025..267336TCONS_00010741-exon-sc0000109-1510915933:267025..267336Clytia hemisphaericaexon
TCONS_00010741-exon-sc0000109-1510915933:265985..266191TCONS_00010741-exon-sc0000109-1510915933:265985..266191Clytia hemisphaericaexon
TCONS_00010741-exon-sc0000109-1491911889:267663..268378TCONS_00010741-exon-sc0000109-1491911889:267663..268378Clytia hemisphaericaexon
TCONS_00010741-exon-sc0000109-1491911889:267025..267336TCONS_00010741-exon-sc0000109-1491911889:267025..267336Clytia hemisphaericaexon
TCONS_00010741-exon-sc0000109-1491911889:265985..266191TCONS_00010741-exon-sc0000109-1491911889:265985..266191Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000109supercontigsc0000109:265985..268378 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.242051	0.269757	0.430669	0.957597	1.35231	1.17916	2.31173	2.37231	4.77876	5.59443	8.05756	4.00708	5.42734	4.15561	4.84983	4.6989	1.40174	1.48995	5.69748	13.001	1.60477	1.07628	1.38765	1.62203	1.2994	2.6507	1.56467	0.961434	6.25588	6.13914
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010741 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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