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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010740 ID=TCONS_00010740|Name=TCONS_00010740|organism=Clytia hemisphaerica|type=transcript|length=686bp
GTTTGACGTCATTGCAATCATAAAAACGGAAAATTTCTAACATACGAGAC
AAATACGGTTGACCTACTTTAAAACGACCAACGTCCTCTTTAACAATACC
ACGTATCTTAGATTTAATTTCAGgtaaaactttcgcgatttcaACCTCAA
GTTTCTCCTCGTCGATTCTTGAGACGTCTTTTAAAAATTCATCCTTCTCT
TTTGCGTATTCGGCACCAACTTCCTTTCCATCAACAATGATGAGGGTGTT
GGTACATCTCAAGACGATATTGCAATCATGATACTCAAGATAAGGAAAAT
CCATGTTTCGGTTGTTAGATAAAAATATGACAGTAGGCCACTCAAACCCG
GAAACAAAGTCTGGATTCGTAATCAAAACTTTACCCTCCTTCAAAGTTTG
AATTGGATCCAGAATCTTTTCAACaggaaaaacaaaacatttcacTCCAC
CGTAAAGCTTAGTTCCCTCATCACGAATATACCGCAGTGGGACATCATAC
AAACTTTTAGCGACCAGGAGAATTCCTCCAGAAGTTAATTTTCGGGCGTG
GACAATGGCTTCTTCGATAGTTTTCATATAGACTGGTGGAGCACCACGAG
GGAAGTTCGGTGGAGTGGGTGCTAGGCCTGCTCCGTATCGAAACGGTTTC
GTCTCAATGATTGATTCAGACTTTTGTACAATTTCG Run BLAST on NCBI transcript from alignment at sc0000109:188877..192905- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010740 ID=TCONS_00010740|Name=TCONS_00010740|organism=Clytia hemisphaerica|type=transcript|length=4029bp|location=Sequence derived from alignment at sc0000109:188877..192905- (Clytia hemisphaerica)
GTTTGACGTCATTGCAATCATAAAAACGGAAAATGACAATACAGTATATG
GCCCCCAAAACGGAGACGGCCCCCAAAACGGAGGTTTTCATTAAAATGAA
GATTCTGACTTGTAGATTTATCAGAATTAAACGATTTTTNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTTTAACACCAAAATT
AGATAAAAATTGCATATAACTCACTCTAGCTCCTTGGATATTGAAAATAA
GTTATGAAAACGGGGTATAGAAAACTTTCTACACCTAGATTTGAGAGAAG
TTTCAAATTTGATCGCCGTTTTGGGGGCCACATACTGTACAAAGAATTGG
TACAACTAGCAGTGAGATGCGCATATAAGAAAAGAAGCTCTTTTGTCTAA
ATATGAAGTCTAAGTAATAAAGTATAGCCGAATGTGAGAAATGAAAACTT
TTTATTGGCTGGGAAAGGTTTCGGCTATACTTCATTGTTGATTGGCTTTA
TGTTTTAGTTTAAACTAGCCGTCACCCGGCGTCGCACCCGCCGAGTAGAG
TGTTGTTGAACACATCAAAAGTCCTTTGGATGGTGGGGGGAGGGTAATAA
GGTTAAATTCTAAGCCCAAAGAACGAAATATTACCACTTATCACTGATCG
AAGCTCGAGAAATCGCATATTTAATGTTTTGTGACGTTATTTGGGCCCTA
AATGACGTCATCGAAAGTGCAATTAACTTTTCAATTTATTTTTTGATCGA
CTCAAAAGATTCTCTTGCTGATTTCCGATCCAATGAGGGGTCAACCATTG
CATAAATCCTTCTCAAACTCGAAATATTGTATTTTCCGTTTTTAATGACG
TCATCGGACCGAAAAAGCCTTAATCTGGATATTTTTAATTTCGAAAGTTT
CTATATACCCACTCTTACCCCCCAACTAATTCCACATAAAATTTCCGATC
CAATAAGGGGTCAACGACCTCCCAACTCCTTTTTAAACTCGAGATATCGC
ATTTTTCAGGTTTTGATGACGTCATCAACTGAAAACACCTGAAAATTCAG
CCAAATTTCTAAGTCACACTCAAGCCTCATAACCCCTCCCATCTTATTCT
CCATAAAATTCTCGATCCAATGAGGGGTCACCGACCTCCCAACTCCTATT
CAAACTCGAGATATCGCATTTTCAAGTTTTTCCCAGATCTGTGACGTCAT
TGGGTCCCTTTACCCCTAATGTTGTCAACGGTCAATTCGCGAATTNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNTTCGCGAATTTTGAAATTTTTGCGGTTA
ACGGGTAGCTTATGCCCCAAGGGTCCCAAAAAGCTAAAAAACGTCAATTA
TTTCCACGGGAAAGTGGGTTTTTAAATTTGCGAAAAATTGACACTGCAAC
GACTTCTTTAAAAAAACGCTAATTTTCACTCTTCCCCTGACCACTTTCGC
TTTCGTTTTCAACCACCCACCCAACCAACCAACCATCCAACCAAAAATCG
GTCACGTAACTCTCGAACCCCCATCTCAAAAATCCATAATGGCCCCCCCA
CGGCTCACTCACATTAGACTTTTAGTATATAGATTAGTATGTACTATTTA
TGAAAAAACAAGGGTGCACGTAATATAATATTAAAATACTGCAGATTACC
AAGAAAATTATAATCTGTAAGGCGAGACCAATTTCATTTGTTGTTCTACG
GGCCCGACCGACCCTATTTTTGCTAAAATCAAAAAAATAATAATGAATTT
CCACTACAATACATTTTACACACTAGTTATTTGTAAGAATTAAATTTGAA
TAAAGCTGAAAATTAATTCAAGAAATTGAAAATCAAGCATTAAGATTTTA
TTATGATCTTCATCGAAGATAAAAAAAGTGAAATTTTGATCCAGATATTT
TTTTGGAAAACATTTTCGATACTTTACCAATCCTGATAAATTAAAAGTTT
ATTCTTATTTTACCGACCGACCGACCCATATTTTGCTAACGATCTGCCCG
TAGAACAACAAATTAAATTGGTCTCGCCTAAATTGCTAATATTCCGAGTA
CAACAAACGAAAATATACTGATGTTAAAAAAACAAAAAATAAAATATACA
TTGACCTGATTAGGCCTCAGAGGCTCAATTCATTTCAGCACATTTAATAC
AGAAGAACTAAGAAGTTGCGAATTTCCATTCACGAGGAGATTAAAGGAAG
GACAAAGGATTCTCTCATTTTTCGGAGCACAAAAATAAAAGCTTTATTCA
GTCGATACTAAAGGTTGTTGCGTCAGAAGGAAAATGTTACTGGGAAATGT
TTGCTTATCAGGACCTTTAAAAACCTATCCGAAAAGCAGTTTCTCAAAAA
AGTTTGAACAATAAGATTAAAATACTAAAATTATAAAATTTAACTTTAAG
AGGTTTGCACTCAGTCCAAATCCTCGATTTCTTCGAGAGCTTTTTCAGTC
TTTTCTTCATTTTCGGTTGTAATCTCATCTGTTTCACGAACAGTTCGTTC
AATGTTACTCTCCTCTTGATCCGTACCACCCTCCGTCGACATCATCTTCG
CGGTCTTTTTCATTCTTATTTGTCAACTTTTTAGCAGCTCTCACCATGTT
GGGTATAAAACTCCCGTAAAAATCAAGCAGTTTAGAAGTGTCAAAGGACC
TACTCGAAAAACCGGAAGTCAAACTTTGAAACGACTTTTTTACTCCTTCC
TCATTCATAGTCGCAATCGTAAAATCTAAAGGCATATATTGAAGATTTTT
TTGATTGACTCCAAGGGCACTTAAGCACGATCGCAATACTTCAGGATTCA
ACGCCTGCAAAAGAGTGTCTGTGATAAGTCCAGGGGATCGACTCTCAACA
TCAACATCTTTAGAAGCTTTCTCTACAATGCTTGTGAAATTTTCTGCCAT
TGTTTCAAAGTTTGATATATCCTTATCATCAGAATTTTTTAAACAGACTT
CCCCCACTTCCTCAAAGCTCAGTGATGTGTCATTGTCGCCAACACTCTCT
TCACTATGTCCATTCAATTTAACTGAGATATCTTTGATTCGTTTCATCAC
TATTGGATTAGCTCTCTCCTCAAACATTTCTAACATACGAGACAAATACG
GTTGACCTACTTTAAAACGACCAACGTCCTCTTTAACAATACCACGTATC
TTAGATTTAATTTCAGGTAAAACTTTCGCGATTTCAACCTCAAGTTTCTC
CTCGTCGATTCTTGAGACGTCTTTTAAAAATTCATCCTTCTCTTTTGCGT
ATTCGGCACCAACTTCCTTTCCATCAACAATGATGAGGGTGTTGGTACAT
CTCAAGACGATATTGCAATCATGATACTCAAGATAAGGAAAATCCATGTT
TCGGTTGTTAGATAAAAATATGACAGTAGGCCACTCAAACCCGGAAACAA
AGTCTGGATTCGTAATCAAAACTTTACCCTCCTTCAAAGTTTGAATTGGA
TCCAGAATCTTTTCAACAGGAAAAACAAAACATTTCACTCCACCGTAAAG
CTTAGTTCCCTCATCACGAATATACCGCAGTGGGACATCATACAAACTTT
TAGCGACCAGGAGAATTCCTCCAGAAGTTAATTTTCGGGCGTGGACAATG
GCTTCTTCGATAGTTTTCATATAGACTGGTGGAGCACCACGAGGGAAGTT
CGGTGGAGTGGGTGCTAGGCCTGCTCCGTATCGAAACGGTTTCGTCTCAA
TGATTGATTCAGACTTTTGTACAATTTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010740-exon-sc0000109-1575043694:192874..192905 | TCONS_00010740-exon-sc0000109-1575043694:192874..192905 | Clytia hemisphaerica | exon |
| TCONS_00010740-exon-sc0000109-1575043694:188877..189530 | TCONS_00010740-exon-sc0000109-1575043694:188877..189530 | Clytia hemisphaerica | exon |
| TCONS_00010740-exon-sc0000109-1510915933:192874..192905 | TCONS_00010740-exon-sc0000109-1510915933:192874..192905 | Clytia hemisphaerica | exon |
| TCONS_00010740-exon-sc0000109-1510915933:188877..189530 | TCONS_00010740-exon-sc0000109-1510915933:188877..189530 | Clytia hemisphaerica | exon |
| TCONS_00010740-exon-sc0000109-1491911889:192874..192905 | TCONS_00010740-exon-sc0000109-1491911889:192874..192905 | Clytia hemisphaerica | exon |
| TCONS_00010740-exon-sc0000109-1491911889:188877..189530 | TCONS_00010740-exon-sc0000109-1491911889:188877..189530 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000109 | supercontig | sc0000109:188877..192905 - |
Blast
The following BLAST results are available for this feature:
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